A citation-based method for searching scientific literature

Søren Lykke-Andersen, Torben Heick Jensen. Nat Rev Mol Cell Biol 2015
Times Cited: 374







List of co-cited articles
868 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Quality and quantity control of gene expression by nonsense-mediated mRNA decay.
Tatsuaki Kurosaki, Maximilian W Popp, Lynne E Maquat. Nat Rev Mol Cell Biol 2019
183
18

Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways.
Martino Colombo, Evangelos D Karousis, Joël Bourquin, Rémy Bruggmann, Oliver Mühlemann. RNA 2017
70
22

Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise.
Joshua T Mendell, Neda A Sharifi, Jennifer L Meyers, Francisco Martinez-Murillo, Harry C Dietz. Nat Genet 2004
590
16

Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay.
Isao Kashima, Akio Yamashita, Natsuko Izumi, Naoyuki Kataoka, Ryo Morishita, Shinichi Hoshino, Mutsuhito Ohno, Gideon Dreyfuss, Shigeo Ohno. Genes Dev 2006
401
13

Nonsense-mediated mRNA decay: novel mechanistic insights and biological impact.
Evangelos D Karousis, Sofia Nasif, Oliver Mühlemann. Wiley Interdiscip Rev RNA 2016
104
12

The rules and impact of nonsense-mediated mRNA decay in human cancers.
Rik G H Lindeboom, Fran Supek, Ben Lehner. Nat Genet 2016
172
12

Autoregulation of the nonsense-mediated mRNA decay pathway in human cells.
Hasmik Yepiskoposyan, Florian Aeschimann, Daniel Nilsson, Michal Okoniewski, Oliver Mühlemann. RNA 2011
159
11

Mechanism and regulation of the nonsense-mediated decay pathway.
Nele Hug, Dasa Longman, Javier F Cáceres. Nucleic Acids Res 2016
240
11


Nonsense-mediated mRNA decay in humans at a glance.
Tatsuaki Kurosaki, Lynne E Maquat. J Cell Sci 2016
192
10

Smg6/Est1 licenses embryonic stem cell differentiation via nonsense-mediated mRNA decay.
Tangliang Li, Yue Shi, Pei Wang, Luis Miguel Guachalla, Baofa Sun, Tjard Joerss, Yu-Sheng Chen, Marco Groth, Anja Krueger, Matthias Platzer,[...]. EMBO J 2015
62
16


Beyond quality control: The role of nonsense-mediated mRNA decay (NMD) in regulating gene expression.
Sofia Nasif, Lara Contu, Oliver Mühlemann. Semin Cell Dev Biol 2018
65
15


Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability.
Hidenori Tani, Naoto Imamachi, Kazi Abdus Salam, Rena Mizutani, Kenichi Ijiri, Takuma Irie, Tetsushi Yada, Yutaka Suzuki, Nobuyoshi Akimitsu. RNA Biol 2012
101
10

NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements.
Joachim Weischenfeldt, Inge Damgaard, David Bryder, Kim Theilgaard-Mönch, Lina A Thoren, Finn Cilius Nielsen, Sten Eirik W Jacobsen, Claus Nerlov, Bo Torben Porse. Genes Dev 2008
184
10

Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay.
Jessica A Hurt, Alex D Robertson, Christopher B Burge. Genome Res 2013
149
9

Identification of elements in human long 3' UTRs that inhibit nonsense-mediated decay.
Kalodiah G Toma, Indrani Rebbapragada, Sébastien Durand, Jens Lykke-Andersen. RNA 2015
57
15

RNA homeostasis governed by cell type-specific and branched feedback loops acting on NMD.
Lulu Huang, Chih-Hong Lou, Waikin Chan, Eleen Y Shum, Ada Shao, Erica Stone, Rachid Karam, Hye-Won Song, Miles F Wilkinson. Mol Cell 2011
130
9

Posttranscriptional gene regulation by spatial rearrangement of the 3' untranslated region.
Andrea B Eberle, Lukas Stalder, Hansruedi Mathys, Rodolfo Zamudio Orozco, Oliver Mühlemann. PLoS Biol 2008
207
9

EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3' UTR length.
Marc Bühler, Silvia Steiner, Fabio Mohn, Alexandra Paillusson, Oliver Mühlemann. Nat Struct Mol Biol 2006
178
9

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
9

A meta-analysis of nonsense mutations causing human genetic disease.
Matthew Mort, Dobril Ivanov, David N Cooper, Nadia A Chuzhanova. Hum Mutat 2008
197
9

Single-Molecule Imaging Uncovers Rules Governing Nonsense-Mediated mRNA Decay.
Tim A Hoek, Deepak Khuperkar, Rik G H Lindeboom, Stijn Sonneveld, Bram M P Verhagen, Sanne Boersma, Michiel Vermeulen, Marvin E Tanenbaum. Mol Cell 2019
46
19

Nonsense-mediated mRNA decay in health and disease.
P A Frischmeyer, H C Dietz. Hum Mol Genet 1999
803
9


Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements.
Niels H Gehring, Joachim B Kunz, Gabriele Neu-Yilik, Stephen Breit, Marcelo H Viegas, Matthias W Hentze, Andreas E Kulozik. Mol Cell 2005
222
9

SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells.
Andrea B Eberle, Søren Lykke-Andersen, Oliver Mühlemann, Torben Heick Jensen. Nat Struct Mol Biol 2009
262
9

Binary specification of nonsense codons by splicing and cytoplasmic translation.
R Thermann, G Neu-Yilik, A Deters, U Frede, K Wehr, C Hagemeier, M W Hentze, A E Kulozik. EMBO J 1998
319
8

The Antagonistic Gene Paralogs Upf3a and Upf3b Govern Nonsense-Mediated RNA Decay.
Eleen Y Shum, Samantha H Jones, Ada Shao, Jennifer Dumdie, Matthew D Krause, Wai-Kin Chan, Chih-Hong Lou, Josh L Espinoza, Hye-Won Song, Mimi H Phan,[...]. Cell 2016
76
10

A faux 3'-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay.
Nadia Amrani, Robin Ganesan, Stephanie Kervestin, David A Mangus, Shubhendu Ghosh, Allan Jacobson. Nature 2004
352
8

PABP enhances release factor recruitment and stop codon recognition during translation termination.
Alexandr Ivanov, Tatyana Mikhailova, Boris Eliseev, Lahari Yeramala, Elizaveta Sokolova, Denis Susorov, Alexey Shuvalov, Christiane Schaffitzel, Elena Alkalaeva. Nucleic Acids Res 2016
53
15


Nonsense-Mediated mRNA Decay Begins Where Translation Ends.
Evangelos D Karousis, Oliver Mühlemann. Cold Spring Harb Perspect Biol 2019
62
12

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
8

The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer immunotherapy.
Rik G H Lindeboom, Michiel Vermeulen, Ben Lehner, Fran Supek. Nat Genet 2019
54
14



Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.
Sue Richards, Nazneen Aziz, Sherri Bale, David Bick, Soma Das, Julie Gastier-Foster, Wayne W Grody, Madhuri Hegde, Elaine Lyon, Elaine Spector,[...]. Genet Med 2015
8

Stress and the nonsense-mediated RNA decay pathway.
Alexandra E Goetz, Miles Wilkinson. Cell Mol Life Sci 2017
37
18

Nonsense-mediated decay in genetic disease: friend or foe?
Jake N Miller, David A Pearce. Mutat Res Rev Mutat Res 2014
116
7

Upf1 senses 3'UTR length to potentiate mRNA decay.
J Robert Hogg, Stephen P Goff. Cell 2010
217
7


NMD: a multifaceted response to premature translational termination.
Stephanie Kervestin, Allan Jacobson. Nat Rev Mol Cell Biol 2012
364
7


Therapeutics based on stop codon readthrough.
Kim M Keeling, Xiaojiao Xue, Gwen Gunn, David M Bedwell. Annu Rev Genomics Hum Genet 2014
150
7

Control of gene expression through the nonsense-mediated RNA decay pathway.
Andrew Nickless, Julie M Bailis, Zhongsheng You. Cell Biosci 2017
63
11

Nonsense-mediated mRNA decay - mechanisms of substrate mRNA recognition and degradation in mammalian cells.
Christoph Schweingruber, Simone C Rufener, David Zünd, Akio Yamashita, Oliver Mühlemann. Biochim Biophys Acta 2013
237
7




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.