A citation-based method for searching scientific literature

Achim Werner, Shintaro Iwasaki, Colleen A McGourty, Sofia Medina-Ruiz, Nia Teerikorpi, Indro Fedrigo, Nicholas T Ingolia, Michael Rape. Nature 2015
Times Cited: 100







List of co-cited articles
988 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ubiquitin-dependent regulation of COPII coat size and function.
Lingyan Jin, Kanika Bajaj Pahuja, Katherine E Wickliffe, Amita Gorur, Christine Baumgärtel, Randy Schekman, Michael Rape. Nature 2012
217
19

Tcof1/Treacle is required for neural crest cell formation and proliferation deficiencies that cause craniofacial abnormalities.
Jill Dixon, Natalie C Jones, Lisa L Sandell, Sachintha M Jayasinghe, Jennifer Crane, Jean-Philippe Rey, Michael J Dixon, Paul A Trainor. Proc Natl Acad Sci U S A 2006
245
18

Prevention of the neurocristopathy Treacher Collins syndrome through inhibition of p53 function.
Natalie C Jones, Megan L Lynn, Karin Gaudenz, Daisuke Sakai, Kazushi Aoto, Jean-Phillipe Rey, Earl F Glynn, Lacey Ellington, Chunying Du, Jill Dixon,[...]. Nat Med 2008
292
14

Mechanisms and function of substrate recruitment by F-box proteins.
Jeffrey R Skaar, Julia K Pagan, Michele Pagano. Nat Rev Mol Cell Biol 2013
405
13

Regulation of the CUL3 Ubiquitin Ligase by a Calcium-Dependent Co-adaptor.
Colleen A McGourty, David Akopian, Carolyn Walsh, Amita Gorur, Achim Werner, Randy Schekman, Diana Bautista, Michael Rape. Cell 2016
66
19

The ubiquitin code.
David Komander, Michael Rape. Annu Rev Biochem 2012
12

The Treacher Collins syndrome (TCOF1) gene product is involved in ribosomal DNA gene transcription by interacting with upstream binding factor.
Benigno C Valdez, Dale Henning, Rolando B So, Jill Dixon, Michael J Dixon. Proc Natl Acad Sci U S A 2004
186
12

Defining the human deubiquitinating enzyme interaction landscape.
Mathew E Sowa, Eric J Bennett, Steven P Gygi, J Wade Harper. Cell 2009
11

Mutations in genes encoding subunits of RNA polymerases I and III cause Treacher Collins syndrome.
Johannes G Dauwerse, Jill Dixon, Saskia Seland, Claudia A L Ruivenkamp, Arie van Haeringen, Lies H Hoefsloot, Dorien J M Peters, Agnes Clement-de Boers, Cornelia Daumer-Haas, Robert Maiwald,[...]. Nat Genet 2011
198
11

Prevention of Treacher Collins syndrome craniofacial anomalies in mouse models via maternal antioxidant supplementation.
Daisuke Sakai, Jill Dixon, Annita Achilleos, Michael Dixon, Paul A Trainor. Nat Commun 2016
52
21

Treacher Collins syndrome TCOF1 protein cooperates with NBS1 in the DNA damage response.
Alberto Ciccia, Jen-Wei Huang, Lior Izhar, Mathew E Sowa, J Wade Harper, Stephen J Elledge. Proc Natl Acad Sci U S A 2014
69
15

The increasing complexity of the ubiquitin code.
Richard Yau, Michael Rape. Nat Cell Biol 2016
493
11

RING domain E3 ubiquitin ligases.
Raymond J Deshaies, Claudio A P Joazeiro. Annu Rev Biochem 2009
10

Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases.
Min Zhuang, Matthew F Calabrese, Jiang Liu, M Brett Waddell, Amanda Nourse, Michal Hammel, Darcie J Miller, Helen Walden, David M Duda, Steven N Seyedin,[...]. Mol Cell 2009
282
10


Multisite dependency of an E3 ligase controls monoubiquitylation-dependent cell fate decisions.
Achim Werner, Regina Baur, Nia Teerikorpi, Deniz U Kaya, Michael Rape. Elife 2018
15
66

Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex.
Lingyan Jin, Adam Williamson, Sudeep Banerjee, Isabelle Philipp, Michael Rape. Cell 2008
366
9

A multiubiquitin chain is confined to specific lysine in a targeted short-lived protein.
V Chau, J W Tobias, A Bachmair, D Marriott, D J Ecker, D K Gonda, A Varshavsky. Science 1989
9

The NBS1-Treacle complex controls ribosomal RNA transcription in response to DNA damage.
Dorthe H Larsen, Flurina Hari, Julie A Clapperton, Myriam Gwerder, Katrin Gutsche, Matthias Altmeyer, Stephanie Jungmichel, Luis I Toledo, Daniel Fink, Maj-Britt Rask,[...]. Nat Cell Biol 2014
87
10


Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
9

Treacle recruits RNA polymerase I complex to the nucleolus that is independent of UBF.
Chen-I Lin, Ning-Hsing Yeh. Biochem Biophys Res Commun 2009
27
33

BTB proteins are substrate-specific adaptors in an SCF-like modular ubiquitin ligase containing CUL-3.
Lai Xu, Yue Wei, Jerome Reboul, Philippe Vaglio, Tae-Ho Shin, Marc Vidal, Stephen J Elledge, J Wade Harper. Nature 2003
366
9

Cullin-3 targets cyclin E for ubiquitination and controls S phase in mammalian cells.
J D Singer, M Gurian-West, B Clurman, J M Roberts. Genes Dev 1999
324
9

Enhanced protein degradation by branched ubiquitin chains.
Hermann-Josef Meyer, Michael Rape. Cell 2014
275
8

The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2.
Katherine E Wickliffe, Sonja Lorenz, David E Wemmer, John Kuriyan, Michael Rape. Cell 2011
210
8

K33-Linked Polyubiquitination of Coronin 7 by Cul3-KLHL20 Ubiquitin E3 Ligase Regulates Protein Trafficking.
Wei-Chien Yuan, Yu-Ru Lee, Shu-Yu Lin, Li-Ying Chang, Yen Pei Tan, Chin-Chun Hung, Jean-Cheng Kuo, Cheng-Hsin Liu, Mei-Yao Lin, Ming Xu,[...]. Mol Cell 2014
90
8

The Treacher Collins syndrome (TCOF1) gene product is involved in pre-rRNA methylation.
Bianca Gonzales, Dale Henning, Rolando B So, Jill Dixon, Michael J Dixon, Benigno C Valdez. Hum Mol Genet 2005
89
8

The BioPlex Network: A Systematic Exploration of the Human Interactome.
Edward L Huttlin, Lily Ting, Raphael J Bruckner, Fana Gebreab, Melanie P Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier,[...]. Cell 2015
791
8


BTB/POZ domain proteins are putative substrate adaptors for cullin 3 ubiquitin ligases.
Rory Geyer, Susan Wee, Scott Anderson, John Yates, Dieter A Wolf. Mol Cell 2003
244
8

Principles of Ubiquitin-Dependent Signaling.
Eugene Oh, David Akopian, Michael Rape. Annu Rev Cell Dev Biol 2018
119
8

TAK1 is a ubiquitin-dependent kinase of MKK and IKK.
C Wang, L Deng, M Hong, G R Akkaraju, J Inoue , Z J Chen. Nature 2001
7

Involvement of linear polyubiquitylation of NEMO in NF-kappaB activation.
Fuminori Tokunaga, Shin-ichi Sakata, Yasushi Saeki, Yoshinori Satomi, Takayoshi Kirisako, Kiyoko Kamei, Tomoko Nakagawa, Michiko Kato, Shigeo Murata, Shoji Yamaoka,[...]. Nat Cell Biol 2009
693
7



The Roles of RNA Polymerase I and III Subunits Polr1c and Polr1d in Craniofacial Development and in Zebrafish Models of Treacher Collins Syndrome.
Kristin E Noack Watt, Annita Achilleos, Cynthia L Neben, Amy E Merrill, Paul A Trainor. PLoS Genet 2016
49
14


Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning.
Nadya Kondrashov, Aya Pusic, Craig R Stumpf, Kunihiko Shimizu, Andrew C Hsieh, Junko Ishijima, Toshihiko Shiroishi, Maria Barna. Cell 2011
356
7

Mutations in kelch-like 3 and cullin 3 cause hypertension and electrolyte abnormalities.
Lynn M Boyden, Murim Choi, Keith A Choate, Carol J Nelson-Williams, Anita Farhi, Hakan R Toka, Irina R Tikhonova, Robert Bjornson, Shrikant M Mane, Giacomo Colussi,[...]. Nature 2012
378
7

Establishing neural crest identity: a gene regulatory recipe.
Marcos Simões-Costa, Marianne E Bronner. Development 2015
323
7

Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics.
Eric J Bennett, John Rush, Steven P Gygi, J Wade Harper. Cell 2010
259
7

The BTB protein MEL-26 is a substrate-specific adaptor of the CUL-3 ubiquitin-ligase.
Lionel Pintard, John H Willis, Andrew Willems, Jacque-Lynne F Johnson, Martin Srayko, Thimo Kurz, Sarah Glaser, Paul E Mains, Mike Tyers, Bruce Bowerman,[...]. Nature 2003
326
7

Dimerization quality control ensures neuronal development and survival.
Elijah L Mena, Rachel A S Kjolby, Robert A Saxton, Achim Werner, Brandon G Lew, John M Boyle, Richard Harland, Michael Rape. Science 2018
34
20

Building ubiquitin chains: E2 enzymes at work.
Yihong Ye, Michael Rape. Nat Rev Mol Cell Biol 2009
633
6

Systematic and quantitative assessment of the ubiquitin-modified proteome.
Woong Kim, Eric J Bennett, Edward L Huttlin, Ailan Guo, Jing Li, Anthony Possemato, Mathew E Sowa, Ramin Rad, John Rush, Michael J Comb,[...]. Mol Cell 2011
6


TCOF1 gene encodes a putative nucleolar phosphoprotein that exhibits mutations in Treacher Collins Syndrome throughout its coding region.
C A Wise, L C Chiang, W A Paznekas, M Sharma, M M Musy, J A Ashley, M Lovett, E W Jabs. Proc Natl Acad Sci U S A 1997
113
6

Treacher Collins syndrome: etiology, pathogenesis and prevention.
Paul A Trainor, Jill Dixon, Michael J Dixon. Eur J Hum Genet 2009
117
6



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.