A citation-based method for searching scientific literature

Aristeidis G Telonis, Phillipe Loher, Yi Jing, Eric Londin, Isidore Rigoutsos. Nucleic Acids Res 2015
Times Cited: 96







List of co-cited articles
952 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



IsomiRs--the overlooked repertoire in the dynamic microRNAome.
Corine T Neilsen, Gregory J Goodall, Cameron P Bracken. Trends Genet 2012
305
41

Knowledge about the presence or absence of miRNA isoforms (isomiRs) can successfully discriminate amongst 32 TCGA cancer types.
Aristeidis G Telonis, Rogan Magee, Phillipe Loher, Inna Chervoneva, Eric Londin, Isidore Rigoutsos. Nucleic Acids Res 2017
104
40

5' isomiR variation is of functional and evolutionary importance.
Geok Chin Tan, Elcie Chan, Attila Molnar, Rupa Sarkar, Diana Alexieva, Ihsan Mad Isa, Sophie Robinson, Shuchen Zhang, Peter Ellis, Cordelia F Langford,[...]. Nucleic Acids Res 2014
144
37

MicroRNAs and their isomiRs function cooperatively to target common biological pathways.
Nicole Cloonan, Shivangi Wani, Qinying Xu, Jian Gu, Kristi Lea, Sheila Heater, Catalin Barbacioru, Anita L Steptoe, Hilary C Martin, Ehsan Nourbakhsh,[...]. Genome Biol 2011
233
26

miRBase: annotating high confidence microRNAs using deep sequencing data.
Ana Kozomara, Sam Griffiths-Jones. Nucleic Acids Res 2014
23

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells.
Ryan D Morin, Michael D O'Connor, Malachi Griffith, Florian Kuchenbauer, Allen Delaney, Anna-Liisa Prabhu, Yongjun Zhao, Helen McDonald, Thomas Zeng, Martin Hirst,[...]. Genome Res 2008
817
23


miRBase: from microRNA sequences to function.
Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones. Nucleic Acids Res 2019
19


Most mammalian mRNAs are conserved targets of microRNAs.
Robin C Friedman, Kyle Kai-How Farh, Christopher B Burge, David P Bartel. Genome Res 2009
16

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness.
A Maxwell Burroughs, Yoshinari Ando, Michiel J L de Hoon, Yasuhiro Tomaru, Takahiro Nishibu, Ryo Ukekawa, Taku Funakoshi, Tsutomu Kurokawa, Harukazu Suzuki, Yoshihide Hayashizaki,[...]. Genome Res 2010
257
16


MicroRNA expression profiles classify human cancers.
Jun Lu, Gad Getz, Eric A Miska, Ezequiel Alvarez-Saavedra, Justin Lamb, David Peck, Alejandro Sweet-Cordero, Benjamin L Ebert, Raymond H Mak, Adolfo A Ferrando,[...]. Nature 2005
15

Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs.
Eric Londin, Phillipe Loher, Aristeidis G Telonis, Kevin Quann, Peter Clark, Yi Jing, Eleftheria Hatzimichael, Yohei Kirino, Shozo Honda, Michelle Lally,[...]. Proc Natl Acad Sci U S A 2015
255
14

Non‑invasive prostate cancer detection by measuring miRNA variants (isomiRs) in urine extracellular vesicles.
Danijela Koppers-Lalic, Michael Hackenberg, Renee de Menezes, Branislav Misovic, Magda Wachalska, Albert Geldof, Nicoletta Zini, Theo de Reijke, Thomas Wurdinger, Andre Vis,[...]. Oncotarget 2016
81
17

Dynamic isomiR regulation in Drosophila development.
Selene L Fernandez-Valverde, Ryan J Taft, John S Mattick. RNA 2010
161
13

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.
Takayuki Katoh, Yuriko Sakaguchi, Kenjyo Miyauchi, Takeo Suzuki, Shin-Ichi Kashiwabara, Tadashi Baba, Tsutomu Suzuki. Genes Dev 2009
319
13

Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
13

Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
13

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
13

Regulation of microRNA function in animals.
Luca F R Gebert, Ian J MacRae. Nat Rev Mol Cell Biol 2019
834
13

A highly expressed miR-101 isomiR is a functional silencing small RNA.
Franc Llorens, Mónica Bañez-Coronel, Lorena Pantano, Jose Antonio del Río, Isidre Ferrer, Xavier Estivill, Eulàlia Martí. BMC Genomics 2013
70
17

Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies.
Aristeidis G Telonis, Phillipe Loher, Shozo Honda, Yi Jing, Juan Palazzo, Yohei Kirino, Isidore Rigoutsos. Oncotarget 2015
104
12

Complexity of the microRNA repertoire revealed by next-generation sequencing.
Lik Wee Lee, Shile Zhang, Alton Etheridge, Li Ma, Dan Martin, David Galas, Kai Wang. RNA 2010
203
12

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.
Joost Boele, Helena Persson, Jay W Shin, Yuri Ishizu, Inga S Newie, Rolf Søkilde, Shannon M Hawkins, Cristian Coarfa, Kazuhiro Ikeda, Ken-ichi Takayama,[...]. Proc Natl Acad Sci U S A 2014
92
13


Profiles of miRNA Isoforms and tRNA Fragments in Prostate Cancer.
Rogan G Magee, Aristeidis G Telonis, Phillipe Loher, Eric Londin, Isidore Rigoutsos. Sci Rep 2018
38
31

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
11

Diversifying microRNA sequence and function.
Stefan L Ameres, Phillip D Zamore. Nat Rev Mol Cell Biol 2013
798
11

Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity.
Stacia K Wyman, Emily C Knouf, Rachael K Parkin, Brian R Fritz, Daniel W Lin, Lucas M Dennis, Michael A Krouse, Philippa J Webster, Muneesh Tewari. Genome Res 2011
210
11

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades.
Marc R Friedländer, Sebastian D Mackowiak, Na Li, Wei Chen, Nikolaus Rajewsky. Nucleic Acids Res 2012
11

The highly expressed 5'isomiR of hsa-miR-140-3p contributes to the tumor-suppressive effects of miR-140 by reducing breast cancer proliferation and migration.
Omar Salem, Nese Erdem, Janine Jung, Ewald Münstermann, Angelika Wörner, Heike Wilhelm, Stefan Wiemann, Cindy Körner. BMC Genomics 2016
61
18

The nuclear RNase III Drosha initiates microRNA processing.
Yoontae Lee, Chiyoung Ahn, Jinju Han, Hyounjeong Choi, Jaekwang Kim, Jeongbin Yim, Junho Lee, Patrick Provost, Olof Rådmark, Sunyoung Kim,[...]. Nature 2003
11

Characterizing isomiR variants within the microRNA-34/449 family.
Olivier Mercey, Alexandra Popa, Amélie Cavard, Agnès Paquet, Benoît Chevalier, Nicolas Pons, Virginie Magnone, Joséphine Zangari, Patrick Brest, Laure-Emmanuelle Zaragosi,[...]. FEBS Lett 2017
33
33



Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers.
Shozo Honda, Phillipe Loher, Megumi Shigematsu, Juan P Palazzo, Ryusuke Suzuki, Issei Imoto, Isidore Rigoutsos, Yohei Kirino. Proc Natl Acad Sci U S A 2015
185
10

Nontemplated nucleotide additions distinguish the small RNA composition in cells from exosomes.
Danijela Koppers-Lalic, Michael Hackenberg, Irene V Bijnsdorp, Monique A J van Eijndhoven, Payman Sadek, Daud Sie, Nicoletta Zini, Jaap M Middeldorp, Bauke Ylstra, Renee X de Menezes,[...]. Cell Rep 2014
348
10

A mammalian microRNA expression atlas based on small RNA library sequencing.
Pablo Landgraf, Mirabela Rusu, Robert Sheridan, Alain Sewer, Nicola Iovino, Alexei Aravin, Sébastien Pfeffer, Amanda Rice, Alice O Kamphorst, Markus Landthaler,[...]. Cell 2007
10


MicroRNA-411 and Its 5'-IsomiR Have Distinct Targets and Functions and Are Differentially Regulated in the Vasculature under Ischemia.
Reginald V C T van der Kwast, Tamar Woudenberg, Paul H A Quax, A Yaël Nossent. Mol Ther 2020
25
40



MicroRNA signatures in human cancers.
George A Calin, Carlo M Croce. Nat Rev Cancer 2006
9

tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma.
Roy L Maute, Christof Schneider, Pavel Sumazin, Antony Holmes, Andrea Califano, Katia Basso, Riccardo Dalla-Favera. Proc Natl Acad Sci U S A 2013
331
9

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
9

IsomiR Bank: a research resource for tracking IsomiRs.
Yuanwei Zhang, Qiguang Zang, Bo Xu, Wei Zheng, Rongjun Ban, Huan Zhang, Yifan Yang, Qiaomei Hao, Furhan Iqbal, Ao Li,[...]. Bioinformatics 2016
32
28

Assessment of isomiR Discrimination Using Commercial qPCR Methods.
Rogan Magee, Aristeidis G Telonis, Tess Cherlin, Isidore Rigoutsos, Eric Londin. Noncoding RNA 2017
28
32

Redirection of silencing targets by adenosine-to-inosine editing of miRNAs.
Yukio Kawahara, Boris Zinshteyn, Praveen Sethupathy, Hisashi Iizasa, Artemis G Hatzigeorgiou, Kazuko Nishikura. Science 2007
558
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.