A citation-based method for searching scientific literature

Veronique G LeBlanc, Marco A Marra. Cancers (Basel) 2015
Times Cited: 32







List of co-cited articles
166 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer.
Naiyer A Rizvi, Matthew D Hellmann, Alexandra Snyder, Pia Kvistborg, Vladimir Makarov, Jonathan J Havel, William Lee, Jianda Yuan, Phillip Wong, Teresa S Ho,[...]. Science 2015
12

Mutational landscape and significance across 12 major cancer types.
Cyriac Kandoth, Michael D McLellan, Fabio Vandin, Kai Ye, Beifang Niu, Charles Lu, Mingchao Xie, Qunyuan Zhang, Joshua F McMichael, Matthew A Wyczalkowski,[...]. Nature 2013
12

Translating RNA sequencing into clinical diagnostics: opportunities and challenges.
Sara A Byron, Kendall R Van Keuren-Jensen, David M Engelthaler, John D Carpten, David W Craig. Nat Rev Genet 2016
246
12

Sequencing depth and coverage: key considerations in genomic analyses.
David Sims, Ian Sudbery, Nicholas E Ilott, Andreas Heger, Chris P Ponting. Nat Rev Genet 2014
591
12

Detection of circulating tumor DNA in early- and late-stage human malignancies.
Chetan Bettegowda, Mark Sausen, Rebecca J Leary, Isaac Kinde, Yuxuan Wang, Nishant Agrawal, Bjarne R Bartlett, Hao Wang, Brandon Luber, Rhoda M Alani,[...]. Sci Transl Med 2014
9

Neoantigens in cancer immunotherapy.
Ton N Schumacher, Robert D Schreiber. Science 2015
9

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
9

Targeted capture and massively parallel sequencing of 12 human exomes.
Sarah B Ng, Emily H Turner, Peggy D Robertson, Steven D Flygare, Abigail W Bigham, Choli Lee, Tristan Shaffer, Michelle Wong, Arindam Bhattacharjee, Evan E Eichler,[...]. Nature 2009
9

The next-generation sequencing revolution and its impact on genomics.
Daniel C Koboldt, Karyn Meltz Steinberg, David E Larson, Richard K Wilson, Elaine R Mardis. Cell 2013
509
9


COSMIC: exploring the world's knowledge of somatic mutations in human cancer.
Simon A Forbes, David Beare, Prasad Gunasekaran, Kenric Leung, Nidhi Bindal, Harry Boutselakis, Minjie Ding, Sally Bamford, Charlotte Cole, Sari Ward,[...]. Nucleic Acids Res 2015
9

The Cancer Genome Atlas: Creating Lasting Value beyond Its Data.
Carolyn Hutter, Jean Claude Zenklusen. Cell 2018
146
9

RNA-Seq: a revolutionary tool for transcriptomics.
Zhong Wang, Mark Gerstein, Michael Snyder. Nat Rev Genet 2009
9

The Gene Expression Omnibus Database.
Emily Clough, Tanya Barrett. Methods Mol Biol 2016
388
9

Coming of age: ten years of next-generation sequencing technologies.
Sara Goodwin, John D McPherson, W Richard McCombie. Nat Rev Genet 2016
9

Advanced Applications of RNA Sequencing and Challenges.
Yixing Han, Shouguo Gao, Kathrin Muegge, Wei Zhang, Bing Zhou. Bioinform Biol Insights 2015
102
9

Vemurafenib in Multiple Nonmelanoma Cancers with BRAF V600 Mutations.
David M Hyman, Igor Puzanov, Vivek Subbiah, Jason E Faris, Ian Chau, Jean-Yves Blay, Jürgen Wolf, Noopur S Raje, Eli L Diamond, Antoine Hollebecque,[...]. N Engl J Med 2015
895
6

Genetic basis for clinical response to CTLA-4 blockade in melanoma.
Alexandra Snyder, Vladimir Makarov, Taha Merghoub, Jianda Yuan, Jesse M Zaretsky, Alexis Desrichard, Logan A Walsh, Michael A Postow, Phillip Wong, Teresa S Ho,[...]. N Engl J Med 2014
6

Spatial and temporal diversity in genomic instability processes defines lung cancer evolution.
Elza C de Bruin, Nicholas McGranahan, Richard Mitter, Max Salm, David C Wedge, Lucy Yates, Mariam Jamal-Hanjani, Seema Shafi, Nirupa Murugaesu, Andrew J Rowan,[...]. Science 2014
646
6


Noninvasive detection of response and resistance in EGFR-mutant lung cancer using quantitative next-generation genotyping of cell-free plasma DNA.
Geoffrey R Oxnard, Cloud P Paweletz, Yanan Kuang, Stacy L Mach, Allison O'Connell, Melissa M Messineo, Jason J Luke, Mohit Butaney, Paul Kirschmeier, David M Jackman,[...]. Clin Cancer Res 2014
500
6

The cancer genome.
Michael R Stratton, Peter J Campbell, P Andrew Futreal. Nature 2009
6

Circulating tumor cell biomarker panel as an individual-level surrogate for survival in metastatic castration-resistant prostate cancer.
Howard I Scher, Glenn Heller, Arturo Molina, Gerhardt Attard, Daniel C Danila, Xiaoyu Jia, Weimin Peng, Shahneen K Sandhu, David Olmos, Ruth Riisnaes,[...]. J Clin Oncol 2015
253
6

PD-1 Blockade in Tumors with Mismatch-Repair Deficiency.
Dung T Le, Jennifer N Uram, Hao Wang, Bjarne R Bartlett, Holly Kemberling, Aleksandra D Eyring, Andrew D Skora, Brandon S Luber, Nilofer S Azad, Dan Laheru,[...]. N Engl J Med 2015
6

Clonal status of actionable driver events and the timing of mutational processes in cancer evolution.
Nicholas McGranahan, Francesco Favero, Elza C de Bruin, Nicolai Juul Birkbak, Zoltan Szallasi, Charles Swanton. Sci Transl Med 2015
340
6

The cancer antigenome.
Bianca Heemskerk, Pia Kvistborg, Ton N M Schumacher. EMBO J 2013
152
6

Association and prognostic significance of BRCA1/2-mutation status with neoantigen load, number of tumor-infiltrating lymphocytes and expression of PD-1/PD-L1 in high grade serous ovarian cancer.
Kyle C Strickland, Brooke E Howitt, Sachet A Shukla, Scott Rodig, Lauren L Ritterhouse, Joyce F Liu, Judy E Garber, Dipanjan Chowdhury, Catherine J Wu, Alan D D'Andrea,[...]. Oncotarget 2016
283
6

A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection.
Erika Assarsson, John Sidney, Carla Oseroff, Valerie Pasquetto, Huynh-Hoa Bui, Nicole Frahm, Christian Brander, Bjoern Peters, Howard Grey, Alessandro Sette. J Immunol 2007
136
6

Signatures of mutational processes in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Samuel A J R Aparicio, Sam Behjati, Andrew V Biankin, Graham R Bignell, Niccolò Bolli, Ake Borg, Anne-Lise Børresen-Dale,[...]. Nature 2013
6

Surveillance of the tumor mutanome by T cells during progression from primary to recurrent ovarian cancer.
Darin A Wick, John R Webb, Julie S Nielsen, Spencer D Martin, David R Kroeger, Katy Milne, Mauro Castellarin, Kwame Twumasi-Boateng, Peter H Watson, Rob A Holt,[...]. Clin Cancer Res 2014
104
6

Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia.
Mohini Rajasagi, Sachet A Shukla, Edward F Fritsch, Derin B Keskin, David DeLuca, Ellese Carmona, Wandi Zhang, Carrie Sougnez, Kristian Cibulskis, John Sidney,[...]. Blood 2014
202
6

Immunization with mutant p53- and K-ras-derived peptides in cancer patients: immune response and clinical outcome.
David P Carbone, I Frank Ciernik, Michael J Kelley, M Charles Smith, Sorena Nadaf, Denise Kavanaugh, V Ellen Maher, Michael Stipanov, David Contois, Bruce E Johnson,[...]. J Clin Oncol 2005
105
6


HLA class I alleles are associated with peptide-binding repertoires of different size, affinity, and immunogenicity.
Sinu Paul, Daniela Weiskopf, Michael A Angelo, John Sidney, Bjoern Peters, Alessandro Sette. J Immunol 2013
138
6

The immunological and clinical effects of mutated ras peptide vaccine in combination with IL-2, GM-CSF, or both in patients with solid tumors.
Osama E Rahma, J Michael Hamilton, Malgorzata Wojtowicz, Omar Dakheel, Sarah Bernstein, David J Liewehr, Seth M Steinberg, Samir N Khleif. J Transl Med 2014
34
6

Whole-genome characterization of chemoresistant ovarian cancer.
Ann-Marie Patch, Elizabeth L Christie, Dariush Etemadmoghadam, Dale W Garsed, Joshy George, Sian Fereday, Katia Nones, Prue Cowin, Kathryn Alsop, Peter J Bailey,[...]. Nature 2015
675
6

Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells.
Paul F Robbins, Yong-Chen Lu, Mona El-Gamil, Yong F Li, Colin Gross, Jared Gartner, Jimmy C Lin, Jamie K Teer, Paul Cliften, Eric Tycksen,[...]. Nat Med 2013
658
6

Cancer genome landscapes.
Bert Vogelstein, Nickolas Papadopoulos, Victor E Velculescu, Shibin Zhou, Luis A Diaz, Kenneth W Kinzler. Science 2013
6

Molecular tumor board: the University of California-San Diego Moores Cancer Center experience.
Maria Schwaederle, Barbara A Parker, Richard B Schwab, Paul T Fanta, Sarah G Boles, Gregory A Daniels, Lyudmila A Bazhenova, Rupa Subramanian, Alice C Coutinho, Haydee Ojeda-Fournier,[...]. Oncologist 2014
93
6

Mutational heterogeneity in cancer and the search for new cancer-associated genes.
Michael S Lawrence, Petar Stojanov, Paz Polak, Gregory V Kryukov, Kristian Cibulskis, Andrey Sivachenko, Scott L Carter, Chip Stewart, Craig H Mermel, Steven A Roberts,[...]. Nature 2013
6

Whole-Exome Sequencing of Metastatic Cancer and Biomarkers of Treatment Response.
Himisha Beltran, Kenneth Eng, Juan Miguel Mosquera, Alexandros Sigaras, Alessandro Romanel, Hanna Rennert, Myriam Kossai, Chantal Pauli, Bishoy Faltas, Jacqueline Fontugne,[...]. JAMA Oncol 2015
169
6


Human genome sequencing in health and disease.
Claudia Gonzaga-Jauregui, James R Lupski, Richard A Gibbs. Annu Rev Med 2012
241
6


Proteogenomic characterization of human colon and rectal cancer.
Bing Zhang, Jing Wang, Xiaojing Wang, Jing Zhu, Qi Liu, Zhiao Shi, Matthew C Chambers, Lisa J Zimmerman, Kent F Shaddox, Sangtae Kim,[...]. Nature 2014
719
6

Cancer cell profiling by barcoding allows multiplexed protein analysis in fine-needle aspirates.
Adeeti V Ullal, Vanessa Peterson, Sarit S Agasti, Suan Tuang, Dejan Juric, Cesar M Castro, Ralph Weissleder. Sci Transl Med 2014
98
6


Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers.
Johan Skog, Tom Würdinger, Sjoerd van Rijn, Dimphna H Meijer, Laura Gainche, Miguel Sena-Esteves, William T Curry, Bob S Carter, Anna M Krichevsky, Xandra O Breakefield. Nat Cell Biol 2008
6

Revealing the Complexity of Breast Cancer by Next Generation Sequencing.
John Verigos, Angeliki Magklara. Cancers (Basel) 2015
19
10

Proteogenomics connects somatic mutations to signalling in breast cancer.
Philipp Mertins, D R Mani, Kelly V Ruggles, Michael A Gillette, Karl R Clauser, Pei Wang, Xianlong Wang, Jana W Qiao, Song Cao, Francesca Petralia,[...]. Nature 2016
680
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.