A citation-based method for searching scientific literature

Keith Siklenka, Serap Erkek, Maren Godmann, Romain Lambrot, Serge McGraw, Christine Lafleur, Tamara Cohen, Jianguo Xia, Matthew Suderman, Michael Hallett, Jacquetta Trasler, Antoine H F M Peters, Sarah Kimmins. Science 2015
Times Cited: 248







List of co-cited articles
1167 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder.
Qi Chen, Menghong Yan, Zhonghong Cao, Xin Li, Yunfang Zhang, Junchao Shi, Gui-hai Feng, Hongying Peng, Xudong Zhang, Ying Zhang,[...]. Science 2016
611
42

Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.
Upasna Sharma, Colin C Conine, Jeremy M Shea, Ana Boskovic, Alan G Derr, Xin Y Bing, Clemence Belleannee, Alper Kucukural, Ryan W Serra, Fengyun Sun,[...]. Science 2016
600
39

Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice.
Katharina Gapp, Ali Jawaid, Peter Sarkies, Johannes Bohacek, Pawel Pelczar, Julien Prados, Laurent Farinelli, Eric Miska, Isabelle M Mansuy. Nat Neurosci 2014
616
36

Distinctive chromatin in human sperm packages genes for embryo development.
Saher Sue Hammoud, David A Nix, Haiying Zhang, Jahnvi Purwar, Douglas T Carrell, Bradley R Cairns. Nature 2009
814
36

In utero effects. In utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism.
Elizabeth J Radford, Mitsuteru Ito, Hui Shi, Jennifer A Corish, Kazuki Yamazawa, Elvira Isganaitis, Stefanie Seisenberger, Timothy A Hore, Wolf Reik, Serap Erkek,[...]. Science 2014
382
30

Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals.
Benjamin R Carone, Lucas Fauquier, Naomi Habib, Jeremy M Shea, Caroline E Hart, Ruowang Li, Christoph Bock, Chengjian Li, Hongcang Gu, Phillip D Zamore,[...]. Cell 2010
707
25

Transgenerational epigenetic programming via sperm microRNA recapitulates effects of paternal stress.
Ali B Rodgers, Christopher P Morgan, N Adrian Leu, Tracy L Bale. Proc Natl Acad Sci U S A 2015
358
24

Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa.
Urszula Brykczynska, Mizue Hisano, Serap Erkek, Liliana Ramos, Edward J Oakeley, Tim C Roloff, Christian Beisel, Dirk Schübeler, Michael B Stadler, Antoine H F M Peters. Nat Struct Mol Biol 2010
438
24

Molecular determinants of nucleosome retention at CpG-rich sequences in mouse spermatozoa.
Serap Erkek, Mizue Hisano, Ching-Yeu Liang, Mark Gill, Rabih Murr, Jürgen Dieker, Dirk Schübeler, Johan van der Vlag, Michael B Stadler, Antoine H F M Peters. Nat Struct Mol Biol 2013
206
23

Epigenetic transgenerational actions of endocrine disruptors and male fertility.
Matthew D Anway, Andrea S Cupp, Mehmet Uzumcu, Michael K Skinner. Science 2005
22

Chromatin States in Mouse Sperm Correlate with Embryonic and Adult Regulatory Landscapes.
Yoon Hee Jung, Michael E G Sauria, Xiaowen Lyu, Manjinder S Cheema, Juan Ausio, James Taylor, Victor G Corces. Cell Rep 2017
130
22

RNA-mediated paternal heredity of diet-induced obesity and metabolic disorders.
Valérie Grandjean, Sandra Fourré, Diana Andrea Fernandes De Abreu, Marie-Alix Derieppe, Jean-Jacques Remy, Minoo Rassoulzadegan. Sci Rep 2015
194
22

Paternal stress exposure alters sperm microRNA content and reprograms offspring HPA stress axis regulation.
Ali B Rodgers, Christopher P Morgan, Stefanie L Bronson, Sonia Revello, Tracy L Bale. J Neurosci 2013
430
21

Small RNAs Gained during Epididymal Transit of Sperm Are Essential for Embryonic Development in Mice.
Colin C Conine, Fengyun Sun, Lina Song, Jaime A Rivera-Pérez, Oliver J Rando. Dev Cell 2018
136
20

Low paternal dietary folate alters the mouse sperm epigenome and is associated with negative pregnancy outcomes.
R Lambrot, C Xu, S Saint-Phar, G Chountalos, T Cohen, M Paquet, M Suderman, M Hallett, S Kimmins. Nat Commun 2013
244
20

Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm.
Upasna Sharma, Fengyun Sun, Colin C Conine, Brian Reichholf, Shweta Kukreja, Veronika A Herzog, Stefan L Ameres, Oliver J Rando. Dev Cell 2018
146
19


Dnmt2 mediates intergenerational transmission of paternally acquired metabolic disorders through sperm small non-coding RNAs.
Yunfang Zhang, Xudong Zhang, Junchao Shi, Francesca Tuorto, Xin Li, Yusheng Liu, Reinhard Liebers, Liwen Zhang, Yongcun Qu, Jingjing Qian,[...]. Nat Cell Biol 2018
163
17

Paternal obesity initiates metabolic disturbances in two generations of mice with incomplete penetrance to the F2 generation and alters the transcriptional profile of testis and sperm microRNA content.
Tod Fullston, E Maria C Ohlsson Teague, Nicole O Palmer, Miles J DeBlasio, Megan Mitchell, Mark Corbett, Cristin G Print, Julie A Owens, Michelle Lane. FASEB J 2013
324
17

Re-evaluating the Localization of Sperm-Retained Histones Revealed the Modification-Dependent Accumulation in Specific Genome Regions.
Kosuke Yamaguchi, Masashi Hada, Yuko Fukuda, Erina Inoue, Yoshinori Makino, Yuki Katou, Katsuhiko Shirahige, Yuki Okada. Cell Rep 2018
48
33

Transgenerational epigenetic inheritance: myths and mechanisms.
Edith Heard, Robert A Martienssen. Cell 2014
769
15

RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse.
Minoo Rassoulzadegan, Valérie Grandjean, Pierre Gounon, Stéphane Vincent, Isabelle Gillot, François Cuzin. Nature 2006
548
15

Chronic high-fat diet in fathers programs β-cell dysfunction in female rat offspring.
Sheau-Fang Ng, Ruby C Y Lin, D Ross Laybutt, Romain Barres, Julie A Owens, Margaret J Morris. Nature 2010
826
15


High-fat diet reprograms the epigenome of rat spermatozoa and transgenerationally affects metabolism of the offspring.
Thais de Castro Barbosa, Lars R Ingerslev, Petter S Alm, Soetkin Versteyhe, Julie Massart, Morten Rasmussen, Ida Donkin, Rasmus Sjögren, Jonathan M Mudry, Laurène Vetterli,[...]. Mol Metab 2015
180
15

Allelic reprogramming of the histone modification H3K4me3 in early mammalian development.
Bingjie Zhang, Hui Zheng, Bo Huang, Wenzhi Li, Yunlong Xiang, Xu Peng, Jia Ming, Xiaotong Wu, Yu Zhang, Qianhua Xu,[...]. Nature 2016
297
14

Epigenetic inheritance at the agouti locus in the mouse.
H D Morgan, H G Sutherland, D I Martin, E Whitelaw. Nat Genet 1999
881
13

Alterations in sperm long RNA contribute to the epigenetic inheritance of the effects of postnatal trauma.
K Gapp, G van Steenwyk, P L Germain, W Matsushima, K L M Rudolph, F Manuella, M Roszkowski, G Vernaz, T Ghosh, P Pelczar,[...]. Mol Psychiatry 2020
54
24

Mapping of histone-binding sites in histone replacement-completed spermatozoa.
Keisuke Yoshida, Masafumi Muratani, Hiromitsu Araki, Fumihito Miura, Takehiro Suzuki, Naoshi Dohmae, Yuki Katou, Katsuhiko Shirahige, Takashi Ito, Shunsuke Ishii. Nat Commun 2018
31
41

Paternally induced transgenerational inheritance of susceptibility to diabetes in mammals.
Yanchang Wei, Cai-Rong Yang, Yan-Ping Wei, Zhen-Ao Zhao, Yi Hou, Heide Schatten, Qing-Yuan Sun. Proc Natl Acad Sci U S A 2014
242
12

High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm.
Benjamin R Carone, Jui-Hung Hung, Sarah J Hainer, Min-Te Chou, Dawn M Carone, Zhiping Weng, Thomas G Fazzio, Oliver J Rando. Dev Cell 2014
143
12

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
12

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
12

Sperm-borne miRNAs and endo-siRNAs are important for fertilization and preimplantation embryonic development.
Shuiqiao Yuan, Andrew Schuster, Chong Tang, Tian Yu, Nicole Ortogero, Jianqiang Bao, Huili Zheng, Wei Yan. Development 2016
124
12

Sex-specific, male-line transgenerational responses in humans.
Marcus E Pembrey, Lars Olov Bygren, Gunnar Kaati, Sören Edvinsson, Kate Northstone, Michael Sjöström, Jean Golding. Eur J Hum Genet 2006
592
11

Transgenerational transmission of environmental information in C. elegans.
Adam Klosin, Eduard Casas, Cristina Hidalgo-Carcedo, Tanya Vavouri, Ben Lehner. Science 2017
173
11

A novel class of tRNA-derived small RNAs extremely enriched in mature mouse sperm.
Hongying Peng, Junchao Shi, Ying Zhang, He Zhang, Shangying Liao, Wei Li, Li Lei, Chunsheng Han, Lina Ning, Yujing Cao,[...]. Cell Res 2012
190
11

Intergenerational and transgenerational epigenetic inheritance in animals.
Marcos Francisco Perez, Ben Lehner. Nat Cell Biol 2019
176
11

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
11

Genome-wide chromatin analysis in mature mouse and human spermatozoa.
Mizue Hisano, Serap Erkek, Sophie Dessus-Babus, Liliana Ramos, Michael B Stadler, Antoine H F M Peters. Nat Protoc 2013
50
22

Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans.
Eric L Greer, Travis J Maures, Duygu Ucar, Anna G Hauswirth, Elena Mancini, Jana P Lim, Bérénice A Benayoun, Yang Shi, Anne Brunet. Nature 2011
382
10

piRNAs can trigger a multigenerational epigenetic memory in the germline of C. elegans.
Alyson Ashe, Alexandra Sapetschnig, Eva-Maria Weick, Jacinth Mitchell, Marloes P Bagijn, Amy C Cording, Anna-Lisa Doebley, Leonard D Goldstein, Nicolas J Lehrbach, Jérémie Le Pen,[...]. Cell 2012
446
10

Paternal diet defines offspring chromatin state and intergenerational obesity.
Anita Öst, Adelheid Lempradl, Eduard Casas, Melanie Weigert, Theodor Tiko, Merdin Deniz, Lorena Pantano, Ulrike Boenisch, Pavel M Itskov, Marlon Stoeckius,[...]. Cell 2014
208
10

Starvation-induced transgenerational inheritance of small RNAs in C. elegans.
Oded Rechavi, Leah Houri-Ze'evi, Sarit Anava, Wee Siong Sho Goh, Sze Yen Kerk, Gregory J Hannon, Oliver Hobert. Cell 2014
255
10


Genome-wide analysis identifies changes in histone retention and epigenetic modifications at developmental and imprinted gene loci in the sperm of infertile men.
Saher Sue Hammoud, David A Nix, Ahmad O Hammoud, Mark Gibson, Bradley R Cairns, Douglas T Carrell. Hum Reprod 2011
166
10

Epigenetic germline inheritance of diet-induced obesity and insulin resistance.
Peter Huypens, Steffen Sass, Moya Wu, Daniela Dyckhoff, Matthias Tschöp, Fabian Theis, Susan Marschall, Martin Hrabě de Angelis, Johannes Beckers. Nat Genet 2016
169
10

Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition.
John Arne Dahl, Inkyung Jung, Håvard Aanes, Gareth D Greggains, Adeel Manaf, Mads Lerdrup, Guoqiang Li, Samantha Kuan, Bin Li, Ah Young Lee,[...]. Nature 2016
270
10

Sperm RNA code programmes the metabolic health of offspring.
Yunfang Zhang, Junchao Shi, Minoo Rassoulzadegan, Francesca Tuorto, Qi Chen. Nat Rev Endocrinol 2019
72
13

Alterations in sperm DNA methylation, non-coding RNA and histone retention associate with DDT-induced epigenetic transgenerational inheritance of disease.
Michael K Skinner, Millissia Ben Maamar, Ingrid Sadler-Riggleman, Daniel Beck, Eric Nilsson, Margaux McBirney, Rachel Klukovich, Yeming Xie, Chong Tang, Wei Yan. Epigenetics Chromatin 2018
90
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.