A citation-based method for searching scientific literature

Wayne I L Davies, T Katherine Tamai, Lei Zheng, Josephine K Fu, Jason Rihel, Russell G Foster, David Whitmore, Mark W Hankins. Genome Res 2015
Times Cited: 72







List of co-cited articles
631 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Melanopsin: An opsin in melanophores, brain, and eye.
I Provencio, G Jiang, W J De Grip, W P Hayes, M D Rollag. Proc Natl Acad Sci U S A 1998
599
22

The opsins.
Akihisa Terakita. Genome Biol 2005
318
20

Deep brain photoreceptors control light-seeking behavior in zebrafish larvae.
António M Fernandes, Kandice Fero, Aristides B Arrenberg, Sadie A Bergeron, Wolfgang Driever, Harold A Burgess. Curr Biol 2012
155
20


A blind circadian clock in cavefish reveals that opsins mediate peripheral clock photoreception.
Nicola Cavallari, Elena Frigato, Daniela Vallone, Nadine Fröhlich, Jose Fernando Lopez-Olmeda, Augusto Foà, Roberto Berti, Francisco Javier Sánchez-Vázquez, Cristiano Bertolucci, Nicholas S Foulkes. PLoS Biol 2011
122
20

Functional diversity of melanopsins and their global expression in the teleost retina.
Wayne I L Davies, Lei Zheng, Steven Hughes, T Katherine Tamai, Michael Turton, Stephanie Halford, Russell G Foster, David Whitmore, Mark W Hankins. Cell Mol Life Sci 2011
73
19

Shedding new light on opsin evolution.
Megan L Porter, Joseph R Blasic, Michael J Bok, Evan G Cameron, Thomas Pringle, Thomas W Cronin, Phyllis R Robinson. Proc Biol Sci 2012
158
19

UV-sensitive photoreceptor protein OPN5 in humans and mice.
Daisuke Kojima, Suguru Mori, Masaki Torii, Akimori Wada, Rika Morishita, Yoshitaka Fukada. PLoS One 2011
100
18

Co-expression of VAL- and TMT-opsins uncovers ancient photosensory interneurons and motorneurons in the vertebrate brain.
Ruth M Fischer, Bruno M Fontinha, Stephan Kirchmaier, Julia Steger, Susanne Bloch, Daigo Inoue, Satchidananda Panda, Simon Rumpel, Kristin Tessmar-Raible. PLoS Biol 2013
42
28

Neuropsin (Opn5): a novel opsin identified in mammalian neural tissue.
Emma E Tarttelin, James Bellingham, Mark W Hankins, Russell G Foster, Robert J Lucas. FEBS Lett 2003
110
16

Teleost multiple tissue (tmt) opsin: a candidate photopigment regulating the peripheral clocks of zebrafish?
Paraskevi Moutsaki, David Whitmore, James Bellingham, Katsuhiko Sakamoto, Zoë K David-Gray, Russell G Foster. Brain Res Mol Brain Res 2003
71
16

The evolution of irradiance detection: melanopsin and the non-visual opsins.
Stuart N Peirson, Stephanie Halford, Russell G Foster. Philos Trans R Soc Lond B Biol Sci 2009
137
15

Neuropsin (OPN5)-mediated photoentrainment of local circadian oscillators in mammalian retina and cornea.
Ethan D Buhr, Wendy W S Yue, Xiaozhi Ren, Zheng Jiang, Hsi-Wen Rock Liao, Xue Mei, Shruti Vemaraju, Minh-Thanh Nguyen, Randall R Reed, Richard A Lang,[...]. Proc Natl Acad Sci U S A 2015
76
13

Light signaling to the zebrafish circadian clock by Cryptochrome 1a.
T Katherine Tamai, Lucy C Young, David Whitmore. Proc Natl Acad Sci U S A 2007
100
13



Pinopsin is a chicken pineal photoreceptive molecule.
T Okano, T Yoshizawa, Y Fukada. Nature 1994
256
12

Light directs zebrafish period2 expression via conserved D and E boxes.
Gad Vatine, Daniela Vallone, Lior Appelbaum, Philipp Mracek, Zohar Ben-Moshe, Kajori Lahiri, Yoav Gothilf, Nicholas S Foulkes. PLoS Biol 2009
86
12

Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions.
Mitsumasa Koyanagi, Seiji Wada, Emi Kawano-Yamashita, Yuichiro Hara, Shigehiro Kuraku, Shigeaki Kosaka, Koichi Kawakami, Satoshi Tamotsu, Hisao Tsukamoto, Yoshinori Shichida,[...]. BMC Biol 2015
21
38

Intrinsic photosensitivity of a deep brain photoreceptor.
Yusuke Nakane, Tsuyoshi Shimmura, Hideki Abe, Takashi Yoshimura. Curr Biol 2014
66
12


Ancestral duplications and highly dynamic opsin gene evolution in percomorph fishes.
Fabio Cortesi, Zuzana Musilová, Sara M Stieb, Nathan S Hart, Ulrike E Siebeck, Martin Malmstrøm, Ole K Tørresen, Sissel Jentoft, Karen L Cheney, N Justin Marshall,[...]. Proc Natl Acad Sci U S A 2015
82
11

It's time to swim! Zebrafish and the circadian clock.
Gad Vatine, Daniela Vallone, Yoav Gothilf, Nicholas S Foulkes. FEBS Lett 2011
171
11

Homologs of vertebrate Opn3 potentially serve as a light sensor in nonphotoreceptive tissue.
Mitsumasa Koyanagi, Eiichiro Takada, Takashi Nagata, Hisao Tsukamoto, Akihisa Terakita. Proc Natl Acad Sci U S A 2013
83
9

A mammalian neural tissue opsin (Opsin 5) is a deep brain photoreceptor in birds.
Yusuke Nakane, Keisuke Ikegami, Hiroko Ono, Naoyuki Yamamoto, Shosei Yoshida, Kanjun Hirunagi, Shizufumi Ebihara, Yoshihiro Kubo, Takashi Yoshimura. Proc Natl Acad Sci U S A 2010
179
9

Molecular evolution of vertebrate visual pigments.
S Yokoyama. Prog Retin Eye Res 2000
371
9

Metazoan opsin evolution reveals a simple route to animal vision.
Roberto Feuda, Sinead C Hamilton, James O McInerney, Davide Pisani. Proc Natl Acad Sci U S A 2012
101
9

Zebrafish Clock rhythmic expression reveals independent peripheral circadian oscillators.
D Whitmore, N S Foulkes, U Strähle, P Sassone-Corsi. Nat Neurosci 1998
248
9

Temperature regulates transcription in the zebrafish circadian clock.
Kajori Lahiri, Daniela Vallone, Srinivas Babu Gondi, Cristina Santoriello, Thomas Dickmeis, Nicholas S Foulkes. PLoS Biol 2005
114
9


Crystal structure of rhodopsin: A G protein-coupled receptor.
K Palczewski, T Kumasaka, T Hori, C A Behnke, H Motoshima, B A Fox, I Le Trong, D C Teller, T Okada, R E Stenkamp,[...]. Science 2000
9

The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins.
M Desmond Ramirez, Autum N Pairett, M Sabrina Pankey, Jeanne M Serb, Daniel I Speiser, Andrew J Swafford, Todd H Oakley. Genome Biol Evol 2016
60
11

Two UV-Sensitive Photoreceptor Proteins, Opn5m and Opn5m2 in Ray-Finned Fish with Distinct Molecular Properties and Broad Distribution in the Retina and Brain.
Keita Sato, Takahiro Yamashita, Yoshihiro Haruki, Hideyo Ohuchi, Masato Kinoshita, Yoshinori Shichida. PLoS One 2016
20
35

Differential expression of duplicated VAL-opsin genes in the developing zebrafish.
Daisuke Kojima, Masaki Torii, Yoshitaka Fukada, John E Dowling. J Neurochem 2008
36
16

Diversity of animal opsin-based pigments and their optogenetic potential.
Mitsumasa Koyanagi, Akihisa Terakita. Biochim Biophys Acta 2014
63
9

Evolution of mammalian Opn5 as a specialized UV-absorbing pigment by a single amino acid mutation.
Takahiro Yamashita, Katsuhiko Ono, Hideyo Ohuchi, Akane Yumoto, Hitoshi Gotoh, Sayuri Tomonari, Kazumi Sakai, Hirofumi Fujita, Yasushi Imamoto, Sumihare Noji,[...]. J Biol Chem 2014
36
16

Evolution of opsins and phototransduction.
Yoshinori Shichida, Take Matsuyama. Philos Trans R Soc Lond B Biol Sci 2009
209
8

Opn5 is a UV-sensitive bistable pigment that couples with Gi subtype of G protein.
Takahiro Yamashita, Hideyo Ohuchi, Sayuri Tomonari, Keiko Ikeda, Kazumi Sakai, Yoshinori Shichida. Proc Natl Acad Sci U S A 2010
111
8

A novel and ancient vertebrate opsin.
B G Soni, R G Foster. FEBS Lett 1997
115
8

Identification of nonvisual photomotor response cells in the vertebrate hindbrain.
David Kokel, Timothy W Dunn, Misha B Ahrens, Rüdiger Alshut, Chung Yan J Cheung, Louis Saint-Amant, Giancarlo Bruni, Rita Mateus, Tjakko J van Ham, Tomoya Shiraki,[...]. J Neurosci 2013
70
8

Isolation and characterization of melanopsin photoreceptors of Atlantic salmon (Salmo salar).
Mari Sandbakken, Lars Ebbesson, Sigurd Stefansson, Jon Vidar Helvik. J Comp Neurol 2012
21
28

Enlightening the brain: linking deep brain photoreception with behavior and physiology.
António M Fernandes, Kandice Fero, Wolfgang Driever, Harold A Burgess. Bioessays 2013
29
20

Light regulates the cell cycle in zebrafish.
Marcus P S Dekens, Cristina Santoriello, Daniela Vallone, Gabriele Grassi, David Whitmore, Nicholas S Foulkes. Curr Biol 2003
124
8

A spinal opsin controls early neural activity and drives a behavioral light response.
Drew Friedmann, Adam Hoagland, Shai Berlin, Ehud Y Isacoff. Curr Biol 2015
22
27

Diminished pupillary light reflex at high irradiances in melanopsin-knockout mice.
R J Lucas, S Hattar, M Takao, D M Berson, R G Foster, K-W Yau. Science 2003
559
8

Phototransduction by retinal ganglion cells that set the circadian clock.
David M Berson, Felice A Dunn, Motoharu Takao. Science 2002
8

Vertebrate ancient opsin and melanopsin: divergent irradiance detectors.
Wayne L Davies, Mark W Hankins, Russell G Foster. Photochem Photobiol Sci 2010
54
11

Parietal-eye phototransduction components and their potential evolutionary implications.
Chih-Ying Su, Dong-Gen Luo, Akihisa Terakita, Yoshinori Shichida, Hsi-Wen Liao, Manija A Kazmi, Thomas P Sakmar, King-Wai Yau. Science 2006
73
8

A novel Go-mediated phototransduction cascade in scallop visual cells.
D Kojima, A Terakita, T Ishikawa, Y Tsukahara, A Maeda, Y Shichida. J Biol Chem 1997
96
8



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.