A citation-based method for searching scientific literature

Sarah E Calvo, Karl R Clauser, Vamsi K Mootha. Nucleic Acids Res 2016
Times Cited: 686







List of co-cited articles
688 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A mitochondrial protein compendium elucidates complex I disease biology.
David J Pagliarini, Sarah E Calvo, Betty Chang, Sunil A Sheth, Scott B Vafai, Shao-En Ong, Geoffrey A Walford, Canny Sugiana, Avihu Boneh, William K Chen,[...]. Cell 2008
18

The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Yasset Perez-Riverol, Attila Csordas, Jingwen Bai, Manuel Bernal-Llinares, Suresh Hewapathirana, Deepti J Kundu, Avinash Inuganti, Johannes Griss, Gerhard Mayer, Martin Eisenacher,[...]. Nucleic Acids Res 2019
11

Importing mitochondrial proteins: machineries and mechanisms.
Agnieszka Chacinska, Carla M Koehler, Dusanka Milenkovic, Trevor Lithgow, Nikolaus Pfanner. Cell 2009
846
9

Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
9

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
9

Mitochondrial diseases.
Gráinne S Gorman, Patrick F Chinnery, Salvatore DiMauro, Michio Hirano, Yasutoshi Koga, Robert McFarland, Anu Suomalainen, David R Thorburn, Massimo Zeviani, Douglass M Turnbull. Nat Rev Dis Primers 2016
369
8




Prevalence of nuclear and mitochondrial DNA mutations related to adult mitochondrial disease.
Gráinne S Gorman, Andrew M Schaefer, Yi Ng, Nicholas Gomez, Emma L Blakely, Charlotte L Alston, Catherine Feeney, Rita Horvath, Patrick Yu-Wai-Man, Patrick F Chinnery,[...]. Ann Neurol 2015
362
7

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
7

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
7

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
7

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
M Ashburner, C A Ball, J A Blake, D Botstein, H Butler, J M Cherry, A P Davis, K Dolinski, S S Dwight, J T Eppig,[...]. Nat Genet 2000
7

The Perseus computational platform for comprehensive analysis of (prote)omics data.
Stefka Tyanova, Tikira Temu, Pavel Sinitcyn, Arthur Carlson, Marco Y Hein, Tamar Geiger, Matthias Mann, Jürgen Cox. Nat Methods 2016
7

Multi-omics analysis identifies ATF4 as a key regulator of the mitochondrial stress response in mammals.
Pedro M Quirós, Miguel A Prado, Nicola Zamboni, Davide D'Amico, Robert W Williams, Daniel Finley, Steven P Gygi, Johan Auwerx. J Cell Biol 2017
246
7



MitoFates: improved prediction of mitochondrial targeting sequences and their cleavage sites.
Yoshinori Fukasawa, Junko Tsuji, Szu-Chin Fu, Kentaro Tomii, Paul Horton, Kenichiro Imai. Mol Cell Proteomics 2015
216
6

Mitochondrial protein-induced stress triggers a global adaptive transcriptional programme.
Felix Boos, Lena Krämer, Carina Groh, Ferris Jung, Per Haberkant, Frank Stein, Florian Wollweber, Adrian Gackstatter, Eva Zöller, Martin van der Laan,[...]. Nat Cell Biol 2019
48
12

Accessory subunits are integral for assembly and function of human mitochondrial complex I.
David A Stroud, Elliot E Surgenor, Luke E Formosa, Boris Reljic, Ann E Frazier, Marris G Dibley, Laura D Osellame, Tegan Stait, Traude H Beilharz, David R Thorburn,[...]. Nature 2016
175
6

Mitochondrial dysfunction remodels one-carbon metabolism in human cells.
Xiaoyan Robert Bao, Shao-En Ong, Olga Goldberger, Jun Peng, Rohit Sharma, Dawn A Thompson, Scott B Vafai, Andrew G Cox, Eizo Marutani, Fumito Ichinose,[...]. Elife 2016
221
6

A subcellular map of the human proteome.
Peter J Thul, Lovisa Åkesson, Mikaela Wiking, Diana Mahdessian, Aikaterini Geladaki, Hammou Ait Blal, Tove Alm, Anna Asplund, Lars Björk, Lisa M Breckels,[...]. Science 2017
798
6

The multifaceted contributions of mitochondria to cellular metabolism.
Jessica B Spinelli, Marcia C Haigis. Nat Cell Biol 2018
216
5

Proteomic mapping of cytosol-facing outer mitochondrial and ER membranes in living human cells by proximity biotinylation.
Victoria Hung, Stephanie S Lam, Namrata D Udeshi, Tanya Svinkina, Gaelen Guzman, Vamsi K Mootha, Steven A Carr, Alice Y Ting. Elife 2017
134
5

mTORC1 Regulates Mitochondrial Integrated Stress Response and Mitochondrial Myopathy Progression.
Nahid A Khan, Joni Nikkanen, Shuichi Yatsuga, Christopher Jackson, Liya Wang, Swagat Pradhan, Riikka Kivelä, Alberto Pessia, Vidya Velagapudi, Anu Suomalainen. Cell Metab 2017
132
5


Mitochondrial DNA mutation associated with Leber's hereditary optic neuropathy.
D C Wallace, G Singh, M T Lott, J A Hodge, T G Schurr, A M Lezza, L J Elsas, E K Nikoskelainen. Science 1988
5


Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.
Hyun-Woo Rhee, Peng Zou, Namrata D Udeshi, Jeffrey D Martell, Vamsi K Mootha, Steven A Carr, Alice Y Ting. Science 2013
557
5

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
5

MitoMiner v3.1, an update on the mitochondrial proteomics database.
Anthony C Smith, Alan J Robinson. Nucleic Acids Res 2016
94
5

Recent Advances in Mitochondrial Disease.
Lyndsey Craven, Charlotte L Alston, Robert W Taylor, Doug M Turnbull. Annu Rev Genomics Hum Genet 2017
94
5

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
5

Transcriptomic and proteomic landscape of mitochondrial dysfunction reveals secondary coenzyme Q deficiency in mammals.
Inge Kühl, Maria Miranda, Ilian Atanassov, Irina Kuznetsova, Yvonne Hinze, Arnaud Mourier, Aleksandra Filipovska, Nils-Göran Larsson. Elife 2017
64
7

Mitochondrial Machineries for Protein Import and Assembly.
Nils Wiedemann, Nikolaus Pfanner. Annu Rev Biochem 2017
268
5

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
5

Mitochondrial DNA Replication Defects Disturb Cellular dNTP Pools and Remodel One-Carbon Metabolism.
Joni Nikkanen, Saara Forsström, Liliya Euro, Ilse Paetau, Rebecca A Kohnz, Liya Wang, Dmitri Chilov, Jenni Viinamäki, Anne Roivainen, Päivi Marjamäki,[...]. Cell Metab 2016
132
5

Mitochondrial Nanotunnels.
Amy E Vincent, Doug M Turnbull, Veronica Eisner, György Hajnóczky, Martin Picard. Trends Cell Biol 2017
42
9

Metabolic regulation of mitochondrial dynamics.
Prashant Mishra, David C Chan. J Cell Biol 2016
468
4

Mitochondrial Dysfunction in Parkinson's Disease: New Mechanistic Insights and Therapeutic Perspectives.
Jin-Sung Park, Ryan L Davis, Carolyn M Sue. Curr Neurol Neurosci Rep 2018
147
4

A mitochondrial pyruvate carrier required for pyruvate uptake in yeast, Drosophila, and humans.
Daniel K Bricker, Eric B Taylor, John C Schell, Thomas Orsak, Audrey Boutron, Yu-Chan Chen, James E Cox, Caleb M Cardon, Jonathan G Van Vranken, Noah Dephoure,[...]. Science 2012
423
4

Mitochondrial and nuclear DNA matching shapes metabolism and healthy ageing.
Ana Latorre-Pellicer, Raquel Moreno-Loshuertos, Ana Victoria Lechuga-Vieco, Fátima Sánchez-Cabo, Carlos Torroja, Rebeca Acín-Pérez, Enrique Calvo, Esther Aix, Andrés González-Guerra, Angela Logan,[...]. Nature 2016
192
4

Heteroplasmy of mouse mtDNA is genetically unstable and results in altered behavior and cognition.
Mark S Sharpley, Christine Marciniak, Kristin Eckel-Mahan, Meagan McManus, Marco Crimi, Katrina Waymire, Chun Shi Lin, Satoru Masubuchi, Nicole Friend, Maya Koike,[...]. Cell 2012
212
4

Reconstitution of mitochondria derived vesicle formation demonstrates selective enrichment of oxidized cargo.
Vincent Soubannier, Peter Rippstein, Brett A Kaufman, Eric A Shoubridge, Heidi M McBride. PLoS One 2012
155
4


Associations of Mitochondrial and Nuclear Mitochondrial Variants and Genes with Seven Metabolic Traits.
Aldi T Kraja, Chunyu Liu, Jessica L Fetterman, Mariaelisa Graff, Christian Theil Have, Charles Gu, Lisa R Yanek, Mary F Feitosa, Dan E Arking, Daniel I Chasman,[...]. Am J Hum Genet 2019
44
9

The mitochondrial proteome and human disease.
Sarah E Calvo, Vamsi K Mootha. Annu Rev Genomics Hum Genet 2010
325
4

Mitophagy and Quality Control Mechanisms in Mitochondrial Maintenance.
Sarah Pickles, Pierre Vigié, Richard J Youle. Curr Biol 2018
467
4

KEGG: kyoto encyclopedia of genes and genomes.
M Kanehisa, S Goto. Nucleic Acids Res 2000
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.