A citation-based method for searching scientific literature

Sarah E Calvo, Karl R Clauser, Vamsi K Mootha. Nucleic Acids Res 2016
Times Cited: 719







List of co-cited articles
700 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A mitochondrial protein compendium elucidates complex I disease biology.
David J Pagliarini, Sarah E Calvo, Betty Chang, Sunil A Sheth, Scott B Vafai, Shao-En Ong, Geoffrey A Walford, Canny Sugiana, Avihu Boneh, William K Chen,[...]. Cell 2008
18

Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
11

Importing mitochondrial proteins: machineries and mechanisms.
Agnieszka Chacinska, Carla M Koehler, Dusanka Milenkovic, Trevor Lithgow, Nikolaus Pfanner. Cell 2009
866
10

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
9

The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Yasset Perez-Riverol, Attila Csordas, Jingwen Bai, Manuel Bernal-Llinares, Suresh Hewapathirana, Deepti J Kundu, Avinash Inuganti, Johannes Griss, Gerhard Mayer, Martin Eisenacher,[...]. Nucleic Acids Res 2019
9


Mitochondrial diseases.
Gráinne S Gorman, Patrick F Chinnery, Salvatore DiMauro, Michio Hirano, Yasutoshi Koga, Robert McFarland, Anu Suomalainen, David R Thorburn, Massimo Zeviani, Douglass M Turnbull. Nat Rev Dis Primers 2016
414
8

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
8

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
8

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
8

Prevalence of nuclear and mitochondrial DNA mutations related to adult mitochondrial disease.
Gráinne S Gorman, Andrew M Schaefer, Yi Ng, Nicholas Gomez, Emma L Blakely, Charlotte L Alston, Catherine Feeney, Rita Horvath, Patrick Yu-Wai-Man, Patrick F Chinnery,[...]. Ann Neurol 2015
380
7

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
7

The multifaceted contributions of mitochondria to cellular metabolism.
Jessica B Spinelli, Marcia C Haigis. Nat Cell Biol 2018
260
6


Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
6

Recent Advances in Mitochondrial Disease.
Lyndsey Craven, Charlotte L Alston, Robert W Taylor, Doug M Turnbull. Annu Rev Genomics Hum Genet 2017
102
6

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
M Ashburner, C A Ball, J A Blake, D Botstein, H Butler, J M Cherry, A P Davis, K Dolinski, S S Dwight, J T Eppig,[...]. Nat Genet 2000
6

Mitochondrial protein-induced stress triggers a global adaptive transcriptional programme.
Felix Boos, Lena Krämer, Carina Groh, Ferris Jung, Per Haberkant, Frank Stein, Florian Wollweber, Adrian Gackstatter, Eva Zöller, Martin van der Laan,[...]. Nat Cell Biol 2019
55
10

A subcellular map of the human proteome.
Peter J Thul, Lovisa Åkesson, Mikaela Wiking, Diana Mahdessian, Aikaterini Geladaki, Hammou Ait Blal, Tove Alm, Anna Asplund, Lars Björk, Lisa M Breckels,[...]. Science 2017
880
6


Proteomic mapping of cytosol-facing outer mitochondrial and ER membranes in living human cells by proximity biotinylation.
Victoria Hung, Stephanie S Lam, Namrata D Udeshi, Tanya Svinkina, Gaelen Guzman, Vamsi K Mootha, Steven A Carr, Alice Y Ting. Elife 2017
145
5


Mitophagy and Quality Control Mechanisms in Mitochondrial Maintenance.
Sarah Pickles, Pierre Vigié, Richard J Youle. Curr Biol 2018
522
5

Cell-type-specific profiling of brain mitochondria reveals functional and molecular diversity.
Caroline Fecher, Laura Trovò, Stephan A Müller, Nicolas Snaidero, Jennifer Wettmarshausen, Sylvia Heink, Oskar Ortiz, Ingrid Wagner, Ralf Kühn, Jana Hartmann,[...]. Nat Neurosci 2019
69
7

Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol.
Lidia Wrobel, Ulrike Topf, Piotr Bragoszewski, Sebastian Wiese, Malgorzata E Sztolsztener, Silke Oeljeklaus, Aksana Varabyova, Maciej Lirski, Piotr Chroscicki, Seweryn Mroczek,[...]. Nature 2015
205
5

Definition of a High-Confidence Mitochondrial Proteome at Quantitative Scale.
Marcel Morgenstern, Sebastian B Stiller, Philipp Lübbert, Christian D Peikert, Stefan Dannenmaier, Friedel Drepper, Uri Weill, Philipp Höß, Reinhild Feuerstein, Michael Gebert,[...]. Cell Rep 2017
158
5

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
5

Mitochondrial protein import: from proteomics to functional mechanisms.
Oliver Schmidt, Nikolaus Pfanner, Chris Meisinger. Nat Rev Mol Cell Biol 2010
406
5

clusterProfiler: an R package for comparing biological themes among gene clusters.
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. OMICS 2012
5

Structure of mammalian respiratory complex I.
Jiapeng Zhu, Kutti R Vinothkumar, Judy Hirst. Nature 2016
279
5

NDUFA4 is a subunit of complex IV of the mammalian electron transport chain.
Eduardo Balsa, Ricardo Marco, Ester Perales-Clemente, Radek Szklarczyk, Enrique Calvo, Manuel O Landázuri, José Antonio Enríquez. Cell Metab 2012
223
5

Transcriptomic and proteomic landscape of mitochondrial dysfunction reveals secondary coenzyme Q deficiency in mammals.
Inge Kühl, Maria Miranda, Ilian Atanassov, Irina Kuznetsova, Yvonne Hinze, Arnaud Mourier, Aleksandra Filipovska, Nils-Göran Larsson. Elife 2017
69
7


The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
5

Maintenance and Expression of Mammalian Mitochondrial DNA.
Claes M Gustafsson, Maria Falkenberg, Nils-Göran Larsson. Annu Rev Biochem 2016
250
5

Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.
Hyun-Woo Rhee, Peng Zou, Namrata D Udeshi, Jeffrey D Martell, Vamsi K Mootha, Steven A Carr, Alice Y Ting. Science 2013
585
5


Structure of the intact 14-subunit human cytochrome c oxidase.
Shuai Zong, Meng Wu, Jinke Gu, Tianya Liu, Runyu Guo, Maojun Yang. Cell Res 2018
59
8

Mitochondrial Dysfunction in Parkinson's Disease: New Mechanistic Insights and Therapeutic Perspectives.
Jin-Sung Park, Ryan L Davis, Carolyn M Sue. Curr Neurol Neurosci Rep 2018
164
4


Mitochondrial and nuclear DNA matching shapes metabolism and healthy ageing.
Ana Latorre-Pellicer, Raquel Moreno-Loshuertos, Ana Victoria Lechuga-Vieco, Fátima Sánchez-Cabo, Carlos Torroja, Rebeca Acín-Pérez, Enrique Calvo, Esther Aix, Andrés González-Guerra, Angela Logan,[...]. Nature 2016
202
4

Mitochondrial form and function.
Jonathan R Friedman, Jodi Nunnari. Nature 2014
704
4


The mitochondrial proteome and human disease.
Sarah E Calvo, Vamsi K Mootha. Annu Rev Genomics Hum Genet 2010
336
4

Mitochondrial proteins: from biogenesis to functional networks.
Nikolaus Pfanner, Bettina Warscheid, Nils Wiedemann. Nat Rev Mol Cell Biol 2019
202
4

KEGG: kyoto encyclopedia of genes and genomes.
M Kanehisa, S Goto. Nucleic Acids Res 2000
4


The subunit composition and function of mammalian cytochrome c oxidase.
Bernhard Kadenbach, Maik Hüttemann. Mitochondrion 2015
104
4

Mitochondrial DNA mutation associated with Leber's hereditary optic neuropathy.
D C Wallace, G Singh, M T Lott, J A Hodge, T G Schurr, A M Lezza, L J Elsas, E K Nikoskelainen. Science 1988
4

Mitochondrial medicine in the omics era.
Joyeeta Rahman, Shamima Rahman. Lancet 2018
90
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.