A citation-based method for searching scientific literature

Khalid A Fakhro, Noha A Yousri, Juan L Rodriguez-Flores, Amal Robay, Michelle R Staudt, Francisco Agosto-Perez, Jacqueline Salit, Joel A Malek, Karsten Suhre, Amin Jayyousi, Mahmoud Zirie, Dora Stadler, Jason G Mezey, Ronald G Crystal. BMC Genomics 2015
Times Cited: 6







List of co-cited articles
19 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
66

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
50

cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate.
Günter Klambauer, Karin Schwarzbauer, Andreas Mayr, Djork-Arné Clevert, Andreas Mitterecker, Ulrich Bodenhofer, Sepp Hochreiter. Nucleic Acids Res 2012
240
33

Origins and functional impact of copy number variation in the human genome.
Donald F Conrad, Dalila Pinto, Richard Redon, Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T Daniel Andrews, Chris Barnes, Peter Campbell,[...]. Nature 2010
33

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.
Pablo Cingolani, Adrian Platts, Le Lily Wang, Melissa Coon, Tung Nguyen, Luan Wang, Susan J Land, Xiangyi Lu, Douglas M Ruden. Fly (Austin) 2012
33

Exploring the role of copy number variants in human adaptation.
Rebecca C Iskow, Omer Gokcumen, Charles Lee. Trends Genet 2012
77
33

Global variation in copy number in the human genome.
Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, T Daniel Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen,[...]. Nature 2006
33

Comparing CNV detection methods for SNP arrays.
Laura Winchester, Christopher Yau, Jiannis Ragoussis. Brief Funct Genomic Proteomic 2009
138
33

Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants.
Dalila Pinto, Katayoon Darvishi, Xinghua Shi, Diana Rajan, Diane Rigler, Tom Fitzgerald, Anath C Lionel, Bhooma Thiruvahindrapuram, Jeffrey R Macdonald, Ryan Mills,[...]. Nat Biotechnol 2011
294
33


Mapping copy number variation by population-scale genome sequencing.
Ryan E Mills, Klaudia Walter, Chip Stewart, Robert E Handsaker, Ken Chen, Can Alkan, Alexej Abyzov, Seungtai Chris Yoon, Kai Ye, R Keira Cheetham,[...]. Nature 2011
714
33


Genome structural variation discovery and genotyping.
Can Alkan, Bradley P Coe, Evan E Eichler. Nat Rev Genet 2011
759
33

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
33

An integrated map of genetic variation from 1,092 human genomes.
Goncalo R Abecasis, Adam Auton, Lisa D Brooks, Mark A DePristo, Richard M Durbin, Robert E Handsaker, Hyun Min Kang, Gabor T Marth, Gil A McVean. Nature 2012
33

An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
999
33

Low copy number of the salivary amylase gene predisposes to obesity.
Mario Falchi, Julia Sarah El-Sayed Moustafa, Petros Takousis, Francesco Pesce, Amélie Bonnefond, Johanna C Andersson-Assarsson, Peter H Sudmant, Rajkumar Dorajoo, Mashael Nedham Al-Shafai, Leonardo Bottolo,[...]. Nat Genet 2014
142
33

Second-generation PLINK: rising to the challenge of larger and richer datasets.
Christopher C Chang, Carson C Chow, Laurent Cam Tellier, Shashaank Vattikuti, Shaun M Purcell, James J Lee. Gigascience 2015
33

Exome sequencing identifies potential risk variants for Mendelian disorders at high prevalence in Qatar.
Juan L Rodriguez-Flores, Khalid Fakhro, Neil R Hackett, Jacqueline Salit, Jennifer Fuller, Francisco Agosto-Perez, Maey Gharbiah, Joel A Malek, Mahmoud Zirie, Amin Jayyousi,[...]. Hum Mutat 2014
32
33

Genome-wide association studies for complex traits: consensus, uncertainty and challenges.
Mark I McCarthy, Gonçalo R Abecasis, Lon R Cardon, David B Goldstein, Julian Little, John P A Ioannidis, Joel N Hirschhorn. Nat Rev Genet 2008
16

Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing.
João Vitor Maldonado dos Santos, Babu Valliyodan, Trupti Joshi, Saad M Khan, Yang Liu, Juexin Wang, Tri D Vuong, Marcelo Fernandes de Oliveira, Francismar Corrêa Marcelino-Guimarães, Dong Xu,[...]. BMC Genomics 2016
21
16

Correlated changes in body shape after five generations of selection to improve growth rate in a breeding program for Nile tilapia Oreochromis niloticus in Brazil.
Carlos Antonio Lopes de Oliveira, Ricardo Pereira Ribeiro, Grazyella Massako Yoshida, Natali Miwa Kunita, Gabriel Soriani Rizzato, Sheila Nogueira de Oliveira, Alexandra Inês Dos Santos, Nguyen Hong Nguyen. J Appl Genet 2016
16
16

Genomic copy number variation in Mus musculus.
M Elizabeth O Locke, Maja Milojevic, Susan T Eitutis, Nisha Patel, Andrea E Wishart, Mark Daley, Kathleen A Hill. BMC Genomics 2015
26
16


Circos: an information aesthetic for comparative genomics.
Martin Krzywinski, Jacqueline Schein, Inanç Birol, Joseph Connors, Randy Gascoyne, Doug Horsman, Steven J Jones, Marco A Marra. Genome Res 2009
16

Analysis of copy number variants in the cattle genome.
James W Kijas, William Barendse, Wes Barris, Blair Harrison, Russell McCulloch, Sean McWilliam, Vicki Whan. Gene 2011
27
16

A genome scan revealed significant associations of growth traits with a major QTL and GHR2 in tilapia.
Feng Liu, Fei Sun, Jun Hong Xia, Jian Li, Gui Hong Fu, Grace Lin, Rong Jian Tu, Zi Yi Wan, Delia Quek, Gen Hua Yue. Sci Rep 2014
25
16

Signatures of selection in tilapia revealed by whole genome resequencing.
Jun Hong Xia, Zhiyi Bai, Zining Meng, Yong Zhang, Le Wang, Feng Liu, Wu Jing, Zi Yi Wan, Jiale Li, Haoran Lin,[...]. Sci Rep 2015
30
16



A genome-wide detection of copy number variations using SNP genotyping arrays in swine.
Jiying Wang, Jicai Jiang, Weixuan Fu, Li Jiang, Xiangdong Ding, Jian-Feng Liu, Qin Zhang. BMC Genomics 2012
71
16

Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis.
Kim H Brown, Kimberly P Dobrinski, Arthur S Lee, Omer Gokcumen, Ryan E Mills, Xinghua Shi, Wilson W S Chong, Jin Yun Helen Chen, Paulo Yoo, Sthuthi David,[...]. Proc Natl Acad Sci U S A 2012
72
16

Quantitative effect of a CNV on a morphological trait in chickens.
Céline Moro, Raphaël Cornette, Agathe Vieaud, Nicolas Bruneau, David Gourichon, Bertrand Bed'hom, Michèle Tixier-Boichard. PLoS One 2015
8
16

APP locus duplication causes autosomal dominant early-onset Alzheimer disease with cerebral amyloid angiopathy.
Anne Rovelet-Lecrux, Didier Hannequin, Gregory Raux, Nathalie Le Meur, Annie Laquerrière, Anne Vital, Cécile Dumanchin, Sébastien Feuillette, Alexis Brice, Martine Vercelletto,[...]. Nat Genet 2006
819
16

Copy-number variation in control population cohorts.
Dalila Pinto, Christian Marshall, Lars Feuk, Stephen W Scherer. Hum Mol Genet 2007
181
16

Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber.
Zhonghua Zhang, Linyong Mao, Huiming Chen, Fengjiao Bu, Guangcun Li, Jinjing Sun, Shuai Li, Honghe Sun, Chen Jiao, Rachel Blakely,[...]. Plant Cell 2015
68
16

Copy number variation influences gene expression and metabolic traits in mice.
Luz D Orozco, Shawn J Cokus, Anatole Ghazalpour, Leslie Ingram-Drake, Susanna Wang, Atila van Nas, Nam Che, Jesus A Araujo, Matteo Pellegrini, Aldons J Lusis. Hum Mol Genet 2009
73
16

Novel origins of copy number variation in the dog genome.
Jonas Berglund, Elisa M Nevalainen, Anna-Maja Molin, Michele Perloski, Catherine André, Michael C Zody, Ted Sharpe, Christophe Hitte, Kerstin Lindblad-Toh, Hannes Lohi,[...]. Genome Biol 2012
54
16


Copy number variation in the horse genome.
Sharmila Ghosh, Zhipeng Qu, Pranab J Das, Erica Fang, Rytis Juras, E Gus Cothran, Sue McDonell, Daniel G Kenney, Teri L Lear, David L Adelson,[...]. PLoS Genet 2014
42
16

Genomewide SNP assay reveals mutations underlying Parkinson disease.
Javier Simon-Sanchez, Sonja Scholz, Maria del Mar Matarin, Hon-Chung Fung, Dena Hernandez, J Raphael Gibbs, Angela Britton, John Hardy, Andrew Singleton. Hum Mutat 2008
41
16

Copy number variation in the domestic dog.
Carlos E Alvarez, Joshua M Akey. Mamm Genome 2012
39
16

Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins.
Lingyang Xu, John B Cole, Derek M Bickhart, Yali Hou, Jiuzhou Song, Paul M VanRaden, Tad S Sonstegard, Curtis P Van Tassell, George E Liu. BMC Genomics 2014
52
16

Strong association of de novo copy number mutations with autism.
Jonathan Sebat, B Lakshmi, Dheeraj Malhotra, Jennifer Troge, Christa Lese-Martin, Tom Walsh, Boris Yamrom, Seungtai Yoon, Alex Krasnitz, Jude Kendall,[...]. Science 2007
16

Population-genetic nature of copy number variations in the human genome.
Mamoru Kato, Takahisa Kawaguchi, Shumpei Ishikawa, Takayoshi Umeda, Reiichiro Nakamichi, Michael H Shapero, Keith W Jones, Yusuke Nakamura, Hiroyuki Aburatani, Tatsuhiko Tsunoda. Hum Mol Genet 2010
33
16

Taking qPCR to a higher level: Analysis of CNV reveals the power of high throughput qPCR to enhance quantitative resolution.
Suzanne Weaver, Simant Dube, Alain Mir, Jian Qin, Gang Sun, Ramesh Ramakrishnan, Robert C Jones, Kenneth J Livak. Methods 2010
140
16

Analysis of copy number variations among diverse cattle breeds.
George E Liu, Yali Hou, Bin Zhu, Maria Francesca Cardone, Lu Jiang, Angelo Cellamare, Apratim Mitra, Leeson J Alexander, Luiz L Coutinho, Maria Elena Dell'Aquila,[...]. Genome Res 2010
186
16

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
16

Copy number variation in the cattle genome.
George E Liu, Derek M Bickhart. Funct Integr Genomics 2012
32
16

Genome-wide copy number imbalances identified in familial and sporadic medullary thyroid carcinoma.
Deborah J Marsh, George Theodosopoulos, Klaus Martin-Schulte, Anne-Louise Richardson, Jeanette Philips, Hans-Dietrich Röher, Leigh Delbridge, Bruce G Robinson. J Clin Endocrinol Metab 2003
42
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.