A citation-based method for searching scientific literature

Ahmet M Denli, Iñigo Narvaiza, Bilal E Kerman, Monique Pena, Christopher Benner, Maria C N Marchetto, Jolene K Diedrich, Aaron Aslanian, Jiao Ma, James J Moresco, Lynne Moore, Tony Hunter, Alan Saghatelian, Fred H Gage. Cell 2015
Times Cited: 106







List of co-cited articles
1396 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
64

Hot L1s account for the bulk of retrotransposition in the human population.
Brook Brouha, Joshua Schustak, Richard M Badge, Sheila Lutz-Prigge, Alexander H Farley, John V Moran, Haig H Kazazian. Proc Natl Acad Sci U S A 2003
640
56



LINE-1 retrotransposition activity in human genomes.
Christine R Beck, Pamela Collier, Catriona Macfarlane, Maika Malig, Jeffrey M Kidd, Evan E Eichler, Richard M Badge, John V Moran. Cell 2010
356
42

LINE-mediated retrotransposition of marked Alu sequences.
Marie Dewannieux, Cécile Esnault, Thierry Heidmann. Nat Genet 2003
672
41

High frequency retrotransposition in cultured mammalian cells.
J V Moran, S E Holmes, T P Naas, R J DeBerardinis, J D Boeke, H H Kazazian. Cell 1996
727
39



L1 retrotransposition in human neural progenitor cells.
Nicole G Coufal, José L Garcia-Perez, Grace E Peng, Gene W Yeo, Yangling Mu, Michael T Lovci, Maria Morell, K Sue O'Shea, John V Moran, Fred H Gage. Nature 2009
519
36

Reverse transcriptase encoded by a human transposable element.
S L Mathias, A F Scott, H H Kazazian, J D Boeke, A Gabriel. Science 1991
554
35

Human L1 retrotransposition: cis preference versus trans complementation.
W Wei, N Gilbert, S L Ooi, J F Lawler, E M Ostertag, H H Kazazian, J D Boeke, J V Moran. Mol Cell Biol 2001
425
32

Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma.
Ruchi Shukla, Kyle R Upton, Martin Muñoz-Lopez, Daniel J Gerhardt, Malcolm E Fisher, Thu Nguyen, Paul M Brennan, J Kenneth Baillie, Agnese Collino, Serena Ghisletti,[...]. Cell 2013
247
31

Human L1 element target-primed reverse transcription in vitro.
Gregory J Cost, Qinghua Feng, Alain Jacquier, Jef D Boeke. EMBO J 2002
340
31

Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes.
Jose M C Tubio, Yilong Li, Young Seok Ju, Inigo Martincorena, Susanna L Cooke, Marta Tojo, Gunes Gundem, Christodoulos P Pipinikas, Jorge Zamora, Keiran Raine,[...]. Science 2014
210
30

Landscape of somatic retrotransposition in human cancers.
Eunjung Lee, Rebecca Iskow, Lixing Yang, Omer Gokcumen, Psalm Haseley, Lovelace J Luquette, Jens G Lohr, Christopher C Harris, Li Ding, Richard K Wilson,[...]. Science 2012
446
30

Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition.
Alysson R Muotri, Vi T Chu, Maria C N Marchetto, Wei Deng, John V Moran, Fred H Gage. Nature 2005
590
30

Ubiquitous L1 mosaicism in hippocampal neurons.
Kyle R Upton, Daniel J Gerhardt, J Samuel Jesuadian, Sandra R Richardson, Francisco J Sánchez-Luque, Gabriela O Bodea, Adam D Ewing, Carmen Salvador-Palomeque, Marjo S van der Knaap, Paul M Brennan,[...]. Cell 2015
178
30

Roles for retrotransposon insertions in human disease.
Dustin C Hancks, Haig H Kazazian. Mob DNA 2016
254
30

LINE-1 elements in structural variation and disease.
Christine R Beck, José Luis Garcia-Perez, Richard M Badge, John V Moran. Annu Rev Genomics Hum Genet 2011
310
29

Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man.
H H Kazazian, C Wong, H Youssoufian, A F Scott, D G Phillips, S E Antonarakis. Nature 1988
637
28

Natural mutagenesis of human genomes by endogenous retrotransposons.
Rebecca C Iskow, Michael T McCabe, Ryan E Mills, Spencer Torene, W Stephen Pittard, Andrew F Neuwald, Erwin G Van Meir, Paula M Vertino, Scott E Devine. Cell 2010
392
27

Somatic retrotransposition alters the genetic landscape of the human brain.
J Kenneth Baillie, Mark W Barnett, Kyle R Upton, Daniel J Gerhardt, Todd A Richmond, Fioravante De Sapio, Paul M Brennan, Patrizia Rizzu, Sarah Smith, Mark Fell,[...]. Nature 2011
432
27

L1 retrotransposition in neurons is modulated by MeCP2.
Alysson R Muotri, Maria C N Marchetto, Nicole G Coufal, Ruth Oefner, Gene Yeo, Kinichi Nakashima, Fred H Gage. Nature 2010
399
27

Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain.
Gilad D Evrony, Xuyu Cai, Eunjung Lee, L Benjamin Hills, Princess C Elhosary, Hillel S Lehmann, J J Parker, Kutay D Atabay, Edward C Gilmore, Annapurna Poduri,[...]. Cell 2012
322
27

Restricting retrotransposons: a review.
John L Goodier. Mob DNA 2016
171
27

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.
Frank M J Jacobs, David Greenberg, Ngan Nguyen, Maximilian Haeussler, Adam D Ewing, Sol Katzman, Benedict Paten, Sofie R Salama, David Haussler. Nature 2014
225
26

The impact of retrotransposons on human genome evolution.
Richard Cordaux, Mark A Batzer. Nat Rev Genet 2009
921
26

Active human retrotransposons: variation and disease.
Dustin C Hancks, Haig H Kazazian. Curr Opin Genet Dev 2012
362
25

Human LINE retrotransposons generate processed pseudogenes.
C Esnault, J Maestre, T Heidmann. Nat Genet 2000
570
25

The regulated retrotransposon transcriptome of mammalian cells.
Geoffrey J Faulkner, Yasumasa Kimura, Carsten O Daub, Shivangi Wani, Charles Plessy, Katharine M Irvine, Kate Schroder, Nicole Cloonan, Anita L Steptoe, Timo Lassmann,[...]. Nat Genet 2009
507
25

Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer.
Y Miki, I Nishisho, A Horii, Y Miyoshi, J Utsunomiya, K W Kinzler, B Vogelstein, Y Nakamura. Cancer Res 1992
402
23


A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer.
Emma C Scott, Eugene J Gardner, Ashiq Masood, Nelson T Chuang, Paula M Vertino, Scott E Devine. Genome Res 2016
105
23

Long interspersed element-1 protein expression is a hallmark of many human cancers.
Nemanja Rodić, Reema Sharma, Rajni Sharma, John Zampella, Lixin Dai, Martin S Taylor, Ralph H Hruban, Christine A Iacobuzio-Donahue, Anirban Maitra, Michael S Torbenson,[...]. Am J Pathol 2014
131
22


Biology of mammalian L1 retrotransposons.
E M Ostertag, H H Kazazian. Annu Rev Genet 2001
549
21

Characterization of LINE-1 ribonucleoprotein particles.
Aurélien J Doucet, Amy E Hulme, Elodie Sahinovic, Deanna A Kulpa, John B Moldovan, Huira C Kopera, Jyoti N Athanikar, Manel Hasnaoui, Alain Bucheton, John V Moran,[...]. PLoS Genet 2010
151
21

Retrotransposition of marked SVA elements by human L1s in cultured cells.
Dustin C Hancks, John L Goodier, Prabhat K Mandal, Ling E Cheung, Haig H Kazazian. Hum Mol Genet 2011
130
21

Determination of L1 retrotransposition kinetics in cultured cells.
E M Ostertag, E T Prak, R J DeBerardinis, J V Moran, H H Kazazian. Nucleic Acids Res 2000
195
21

Engineered LINE-1 retrotransposition in nondividing human neurons.
Angela Macia, Thomas J Widmann, Sara R Heras, Veronica Ayllon, Laura Sanchez, Meriem Benkaddour-Boumzaouad, Martin Muñoz-Lopez, Alejandro Rubio, Suyapa Amador-Cubero, Eva Blanco-Jimenez,[...]. Genome Res 2017
67
31

Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing.
Elena Helman, Michael S Lawrence, Chip Stewart, Carrie Sougnez, Gad Getz, Matthew Meyerson. Genome Res 2014
125
20


Trimeric structure and flexibility of the L1ORF1 protein in human L1 retrotransposition.
Elena Khazina, Vincent Truffault, Regina Büttner, Steffen Schmidt, Murray Coles, Oliver Weichenrieder. Nat Struct Mol Biol 2011
88
22

The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery.
Julija Raiz, Annette Damert, Sergiu Chira, Ulrike Held, Sabine Klawitter, Matthias Hamdorf, Johannes Löwer, Wolf H Strätling, Roswitha Löwer, Gerald G Schumann. Nucleic Acids Res 2012
128
20

Activation of individual L1 retrotransposon instances is restricted to cell-type dependent permissive loci.
Claude Philippe, Dulce B Vargas-Landin, Aurélien J Doucet, Dominic van Essen, Jorge Vera-Otarola, Monika Kuciak, Antoine Corbin, Pilvi Nigumann, Gaël Cristofari. Elife 2016
66
30

Mobile DNA in Health and Disease.
Haig H Kazazian, John V Moran. N Engl J Med 2017
127
20

Transposable elements in cancer.
Kathleen H Burns. Nat Rev Cancer 2017
160
20

A 3' Poly(A) Tract Is Required for LINE-1 Retrotransposition.
Aurélien J Doucet, Jeremy E Wilusz, Tomoichiro Miyoshi, Ying Liu, John V Moran. Mol Cell 2015
63
30



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.