A citation-based method for searching scientific literature

Tina Thorslund, Anita Ripplinger, Saskia Hoffmann, Thomas Wild, Michael Uckelmann, Bine Villumsen, Takeo Narita, Titia K Sixma, Chunaram Choudhary, Simon Bekker-Jensen, Niels Mailand. Nature 2015
Times Cited: 229







List of co-cited articles
1547 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RNF168 ubiquitinates K13-15 on H2A/H2AX to drive DNA damage signaling.
Francesca Mattiroli, Joseph H A Vissers, Willem J van Dijk, Pauline Ikpa, Elisabetta Citterio, Wim Vermeulen, Jurgen A Marteijn, Titia K Sixma. Cell 2012
401
55

53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark.
Amélie Fradet-Turcotte, Marella D Canny, Cristina Escribano-Díaz, Alexandre Orthwein, Charles C Y Leung, Hao Huang, Marie-Claude Landry, Julianne Kitevski-LeBlanc, Sylvie M Noordermeer, Frank Sicheri,[...]. Nature 2013
432
40

Orchestration of the DNA-damage response by the RNF8 ubiquitin ligase.
Nadine K Kolas, J Ross Chapman, Shinichiro Nakada, Jarkko Ylanko, Richard Chahwan, Frédéric D Sweeney, Stephanie Panier, Megan Mendez, Jan Wildenhain, Timothy M Thomson,[...]. Science 2007
672
38

RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins.
Niels Mailand, Simon Bekker-Jensen, Helene Faustrup, Fredrik Melander, Jiri Bartek, Claudia Lukas, Jiri Lukas. Cell 2007
852
38

RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins.
Carsten Doil, Niels Mailand, Simon Bekker-Jensen, Patrice Menard, Dorthe Helena Larsen, Rainer Pepperkok, Jan Ellenberg, Stephanie Panier, Daniel Durocher, Jiri Bartek,[...]. Cell 2009
653
35

RNF8 transduces the DNA-damage signal via histone ubiquitylation and checkpoint protein assembly.
Michael S Y Huen, Robert Grant, Isaac Manke, Kay Minn, Xiaochun Yu, Michael B Yaffe, Junjie Chen. Cell 2007
779
31

The RIDDLE syndrome protein mediates a ubiquitin-dependent signaling cascade at sites of DNA damage.
Grant S Stewart, Stephanie Panier, Kelly Townsend, Abdallah K Al-Hakim, Nadine K Kolas, Edward S Miller, Shinichiro Nakada, Jarkko Ylanko, Signe Olivarius, Megan Mendez,[...]. Cell 2009
545
29

The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
28

The DNA damage response: making it safe to play with knives.
Alberto Ciccia, Stephen J Elledge. Mol Cell 2010
23

L3MBTL2 orchestrates ubiquitin signalling by dictating the sequential recruitment of RNF8 and RNF168 after DNA damage.
Somaira Nowsheen, Khaled Aziz, Asef Aziz, Min Deng, Bo Qin, Kuntian Luo, Karthik B Jeganathan, Henan Zhang, Tongzheng Liu, Jia Yu,[...]. Nat Cell Biol 2018
49
44

Human BRCA1-BARD1 ubiquitin ligase activity counteracts chromatin barriers to DNA resection.
Ruth M Densham, Alexander J Garvin, Helen R Stone, Joanna Strachan, Robert A Baldock, Manuel Daza-Martin, Alice Fletcher, Sarah Blair-Reid, James Beesley, Balraj Johal,[...]. Nat Struct Mol Biol 2016
150
21

DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139.
E P Rogakou, D R Pilch, A H Orr, V S Ivanova, W M Bonner. J Biol Chem 1998
20

RAP80 targets BRCA1 to specific ubiquitin structures at DNA damage sites.
Bijan Sobhian, Genze Shao, Dana R Lilli, Aedín C Culhane, Lisa A Moreau, Bing Xia, David M Livingston, Roger A Greenberg. Science 2007
520
20

BRCA1 is a histone-H2A-specific ubiquitin ligase.
Reinhard Kalb, Donna L Mallery, Conor Larkin, Jeffrey T J Huang, Kevin Hiom. Cell Rep 2014
88
20

Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair.
Maria Victoria Botuyan, Joseph Lee, Irene M Ward, Ja-Eun Kim, James R Thompson, Junjie Chen, Georges Mer. Cell 2006
705
18

MDC1 directly binds phosphorylated histone H2AX to regulate cellular responses to DNA double-strand breaks.
Manuel Stucki, Julie A Clapperton, Duaa Mohammad, Michael B Yaffe, Stephen J Smerdon, Stephen P Jackson. Cell 2005
753
18

Histone ubiquitination in the DNA damage response.
Michael Uckelmann, Titia K Sixma. DNA Repair (Amst) 2017
101
18

ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
481
17

Requirement of ATM-dependent monoubiquitylation of histone H2B for timely repair of DNA double-strand breaks.
Lilach Moyal, Yaniv Lerenthal, Mali Gana-Weisz, Gilad Mass, Sairei So, Shih-Ya Wang, Berina Eppink, Young Min Chung, Gil Shalev, Efrat Shema,[...]. Mol Cell 2011
265
17

The structural basis of modified nucleosome recognition by 53BP1.
Marcus D Wilson, Samir Benlekbir, Amélie Fradet-Turcotte, Alana Sherker, Jean-Philippe Julien, Andrea McEwan, Sylvie M Noordermeer, Frank Sicheri, John L Rubinstein, Daniel Durocher. Nature 2016
140
17

Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks.
François Aymard, Beatrix Bugler, Christine K Schmidt, Emmanuelle Guillou, Pierre Caron, Sébastien Briois, Jason S Iacovoni, Virginie Daburon, Kyle M Miller, Stephen P Jackson,[...]. Nat Struct Mol Biol 2014
365
16

RAP80-directed tuning of BRCA1 homologous recombination function at ionizing radiation-induced nuclear foci.
Yiduo Hu, Ralph Scully, Bijan Sobhian, Anyong Xie, Elena Shestakova, David M Livingston. Genes Dev 2011
169
16

A macrohistone variant links dynamic chromatin compaction to BRCA1-dependent genome maintenance.
Simran Khurana, Michael J Kruhlak, Jeongkyu Kim, Andy D Tran, Jinping Liu, Katherine Nyswaner, Lei Shi, Parthav Jailwala, Myong-Hee Sung, Ofir Hakim,[...]. Cell Rep 2014
137
15

Regulation of homologous recombination by RNF20-dependent H2B ubiquitination.
Kyosuke Nakamura, Akihiro Kato, Junya Kobayashi, Hiromi Yanagihara, Shuichi Sakamoto, Douglas V N P Oliveira, Mikio Shimada, Hiroshi Tauchi, Hidekazu Suzuki, Satoshi Tashiro,[...]. Mol Cell 2011
239
15

53BP1 inhibits homologous recombination in Brca1-deficient cells by blocking resection of DNA breaks.
Samuel F Bunting, Elsa Callén, Nancy Wong, Hua-Tang Chen, Federica Polato, Amanda Gunn, Anne Bothmer, Niklas Feldhahn, Oscar Fernandez-Capetillo, Liu Cao,[...]. Cell 2010
15

DNA damage-induced histone H1 ubiquitylation is mediated by HUWE1 and stimulates the RNF8-RNF168 pathway.
I K Mandemaker, L van Cuijk, R C Janssens, H Lans, K Bezstarosti, J H Hoeijmakers, J A Demmers, W Vermeulen, J A Marteijn. Sci Rep 2017
34
44

Histone H2A.Z controls a critical chromatin remodeling step required for DNA double-strand break repair.
Ye Xu, Marina K Ayrapetov, Chang Xu, Ozge Gursoy-Yuzugullu, Yiduo Hu, Brendan D Price. Mol Cell 2012
200
14

RNF8- and RNF168-dependent degradation of KDM4A/JMJD2A triggers 53BP1 recruitment to DNA damage sites.
Frédérick A Mallette, Francesca Mattiroli, Gaofeng Cui, Leah C Young, Michael J Hendzel, Georges Mer, Titia K Sixma, Stéphane Richard. EMBO J 2012
238
14

H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.
Kyosuke Nakamura, Giulia Saredi, Jordan R Becker, Benjamin M Foster, Nhuong V Nguyen, Tracey E Beyer, Laura C Cesa, Peter A Faull, Saulius Lukauskas, Thomas Frimurer,[...]. Nat Cell Biol 2019
72
19

A novel ubiquitin mark at the N-terminal tail of histone H2As targeted by RNF168 ubiquitin ligase.
Marco Gatti, Sabrina Pinato, Elena Maspero, Paolo Soffientini, Simona Polo, Lorenza Penengo. Cell Cycle 2012
114
14

Regulation of DNA double-strand break repair by ubiquitin and ubiquitin-like modifiers.
Petra Schwertman, Simon Bekker-Jensen, Niels Mailand. Nat Rev Mol Cell Biol 2016
186
13

The TIP60 Complex Regulates Bivalent Chromatin Recognition by 53BP1 through Direct H4K20me Binding and H2AK15 Acetylation.
Karine Jacquet, Amélie Fradet-Turcotte, Nikita Avvakumov, Jean-Philippe Lambert, Céline Roques, Raj K Pandita, Eric Paquet, Pauline Herst, Anne-Claude Gingras, Tej K Pandita,[...]. Mol Cell 2016
127
13

USP51 deubiquitylates H2AK13,15ub and regulates DNA damage response.
Zhiquan Wang, Honglian Zhang, Ji Liu, Abigael Cheruiyot, Jeong-Heon Lee, Tamas Ordog, Zhenkun Lou, Zhongsheng You, Zhiguo Zhang. Genes Dev 2016
50
26

A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice.
Cristina Escribano-Díaz, Alexandre Orthwein, Amélie Fradet-Turcotte, Mengtan Xing, Jordan T F Young, Ján Tkáč, Michael A Cook, Adam P Rosebrock, Meagan Munro, Marella D Canny,[...]. Mol Cell 2013
565
13

USP48 restrains resection by site-specific cleavage of the BRCA1 ubiquitin mark from H2A.
Michael Uckelmann, Ruth M Densham, Roy Baas, Herrie H K Winterwerp, Alexander Fish, Titia K Sixma, Joanna R Morris. Nat Commun 2018
45
28

Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures.
Thomas Clouaire, Vincent Rocher, Anahita Lashgari, Coline Arnould, Marion Aguirrebengoa, Anna Biernacka, Magdalena Skrzypczak, François Aymard, Bernard Fongang, Norbert Dojer,[...]. Mol Cell 2018
111
13

Requirement for PBAF in transcriptional repression and repair at DNA breaks in actively transcribed regions of chromatin.
Andreas Kakarougkas, Amani Ismail, Anna L Chambers, Enriqueta Riballo, Alex D Herbert, Julia Künzel, Markus Löbrich, Penny A Jeggo, Jessica A Downs. Mol Cell 2014
175
12

DNA double-strand breaks promote methylation of histone H3 on lysine 9 and transient formation of repressive chromatin.
Marina K Ayrapetov, Ozge Gursoy-Yuzugullu, Chang Xu, Ye Xu, Brendan D Price. Proc Natl Acad Sci U S A 2014
212
12

Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination.
Jiangbo Tang, Nam Woo Cho, Gaofeng Cui, Erica M Manion, Niraj M Shanbhag, Maria Victoria Botuyan, Georges Mer, Roger A Greenberg. Nat Struct Mol Biol 2013
327
12

Histone demethylase KDM5A regulates the ZMYND8-NuRD chromatin remodeler to promote DNA repair.
Fade Gong, Thomas Clouaire, Marion Aguirrebengoa, Gaëlle Legube, Kyle M Miller. J Cell Biol 2017
83
14

The shieldin complex mediates 53BP1-dependent DNA repair.
Sylvie M Noordermeer, Salomé Adam, Dheva Setiaputra, Marco Barazas, Stephen J Pettitt, Alexanda K Ling, Michele Olivieri, Alejandro Álvarez-Quilón, Nathalie Moatti, Michal Zimmermann,[...]. Nature 2018
250
12



Double-strand break repair: 53BP1 comes into focus.
Stephanie Panier, Simon J Boulton. Nat Rev Mol Cell Biol 2014
617
11

ATM phosphorylates histone H2AX in response to DNA double-strand breaks.
S Burma, B P Chen, M Murphy, A Kurimasa, D J Chen. J Biol Chem 2001
11

Non-homologous DNA end joining and alternative pathways to double-strand break repair.
Howard H Y Chang, Nicholas R Pannunzio, Noritaka Adachi, Michael R Lieber. Nat Rev Mol Cell Biol 2017
632
11

The AAA-ATPase VCP/p97 promotes 53BP1 recruitment by removing L3MBTL1 from DNA double-strand breaks.
Klara Acs, Martijn S Luijsterburg, Leena Ackermann, Florian A Salomons, Thorsten Hoppe, Nico P Dantuma. Nat Struct Mol Biol 2011
203
11

Site-specific DICER and DROSHA RNA products control the DNA-damage response.
Sofia Francia, Flavia Michelini, Alka Saxena, Dave Tang, Michiel de Hoon, Viviana Anelli, Marina Mione, Piero Carninci, Fabrizio d'Adda di Fagagna. Nature 2012
346
11

BRCA1 Haploinsufficiency Is Masked by RNF168-Mediated Chromatin Ubiquitylation.
Dali Zong, Salomé Adam, Yifan Wang, Hiroyuki Sasanuma, Elsa Callén, Matilde Murga, Amanda Day, Michael J Kruhlak, Nancy Wong, Meagan Munro,[...]. Mol Cell 2019
52
21

High-resolution profiling of gammaH2AX around DNA double strand breaks in the mammalian genome.
Jason S Iacovoni, Pierre Caron, Imen Lassadi, Estelle Nicolas, Laurent Massip, Didier Trouche, Gaëlle Legube. EMBO J 2010
322
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.