A citation-based method for searching scientific literature

Satyaprakash Pandey, Prachi Agarwala, Gopal G Jayaraj, Raimundo Gargallo, Souvik Maiti. Biochemistry 2015
Times Cited: 53







List of co-cited articles
789 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A potassium ion-dependent RNA structural switch regulates human pre-miRNA 92b maturation.
Gayan Mirihana Arachchilage, Arosha C Dassanayake, Soumitra Basu. Chem Biol 2015
75
77

Structural Analysis using SHALiPE to Reveal RNA G-Quadruplex Formation in Human Precursor MicroRNA.
Chun Kit Kwok, Aleksandr B Sahakyan, Shankar Balasubramanian. Angew Chem Int Ed Engl 2016
59
45

Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells.
Giulia Biffi, Marco Di Antonio, David Tannahill, Shankar Balasubramanian. Nat Chem 2014
358
43

rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome.
Chun Kit Kwok, Giovanni Marsico, Aleksandr B Sahakyan, Vicki S Chambers, Shankar Balasubramanian. Nat Methods 2016
192
41


G-quadruplexes in RNA biology.
Stefania Millevoi, Hervé Moine, Stéphan Vagner. Wiley Interdiscip Rev RNA 2012
190
37

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
37

An RNA hairpin to G-quadruplex conformational transition.
Anthony Bugaut, Pierre Murat, Shankar Balasubramanian. J Am Chem Soc 2012
59
35

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
588
35

5'-UTR RNA G-quadruplexes: translation regulation and targeting.
Anthony Bugaut, Shankar Balasubramanian. Nucleic Acids Res 2012
411
33

RNA G-Quadruplexes in Biology: Principles and Molecular Mechanisms.
Marta M Fay, Shawn M Lyons, Pavel Ivanov. J Mol Biol 2017
192
33

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
32

An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation.
Sunita Kumari, Anthony Bugaut, Julian L Huppert, Shankar Balasubramanian. Nat Chem Biol 2007
522
32

G-quadruplex RNA structure as a signal for neurite mRNA targeting.
Murugan Subramanian, Florence Rage, Ricardos Tabet, Eric Flatter, Jean-Louis Mandel, Hervé Moine. EMBO Rep 2011
158
30

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
28

An RNA G-quadruplex is essential for cap-independent translation initiation in human VEGF IRES.
Mark J Morris, Yoichi Negishi, Cathy Pazsint, Joseph D Schonhoft, Soumitra Basu. J Am Chem Soc 2010
142
26

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
749
26

G-quadruplex structures in TP53 intron 3: role in alternative splicing and in production of p53 mRNA isoforms.
Virginie Marcel, Phong L T Tran, Charlotte Sagne, Ghyslaine Martel-Planche, Laurence Vaslin, Marie-Paule Teulade-Fichou, Janet Hall, Jean-Louis Mergny, Pierre Hainaut, Eric Van Dyck. Carcinogenesis 2011
146
26

Re-evaluation of G-quadruplex propensity with G4Hunter.
Amina Bedrat, Laurent Lacroix, Jean-Louis Mergny. Nucleic Acids Res 2016
288
26

3' UTR G-quadruplexes regulate miRNA binding.
Samuel Rouleau, Jean-Pierre Sehi Glouzon, Andrea Brumwell, Martin Bisaillon, Jean-Pierre Perreault. RNA 2017
57
26

G-Quadruplexes influence pri-microRNA processing.
Samuel G Rouleau, Jean-Michel Garant, François Bolduc, Martin Bisaillon, Jean-Pierre Perreault. RNA Biol 2018
38
36

Potential G-quadruplexes in the human long non-coding transcriptome.
Gopal Gunanathan Jayaraj, Satyaprakash Pandey, Vinod Scaria, Souvik Maiti. RNA Biol 2012
38
34


The G-quadruplex augments translation in the 5' untranslated region of transforming growth factor β2.
Prachi Agarwala, Satyaprakash Pandey, Koyeli Mapa, Souvik Maiti. Biochemistry 2013
52
25

Metal Cations in G-Quadruplex Folding and Stability.
Debmalya Bhattacharyya, Gayan Mirihana Arachchilage, Soumitra Basu. Front Chem 2016
235
24

Transcriptome-wide identification of transient RNA G-quadruplexes in human cells.
Sunny Y Yang, Pauline Lejault, Sandy Chevrier, Romain Boidot, A Gordon Robertson, Judy M Y Wong, David Monchaud. Nat Commun 2018
99
24

G-quadruplexes: Emerging roles in neurodegenerative diseases and the non-coding transcriptome.
Roberto Simone, Pietro Fratta, Stephen Neidle, Gary N Parkinson, Adrian M Isaacs. FEBS Lett 2015
125
22

RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer.
Andrew L Wolfe, Kamini Singh, Yi Zhong, Philipp Drewe, Vinagolu K Rajasekhar, Viraj R Sanghvi, Konstantinos J Mavrakis, Man Jiang, Justine E Roderick, Joni Van der Meulen,[...]. Nature 2014
354
22


Effect of loops and G-quartets on the stability of RNA G-quadruplexes.
Satyaprakash Pandey, Prachi Agarwala, Souvik Maiti. J Phys Chem B 2013
59
22

The tale of RNA G-quadruplex.
Prachi Agarwala, Satyaprakash Pandey, Souvik Maiti. Org Biomol Chem 2015
92
22

QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences.
Oleg Kikin, Lawrence D'Antonio, Paramjeet S Bagga. Nucleic Acids Res 2006
502
22

5'-UTR G-quadruplex structures acting as translational repressors.
Jean-Denis Beaudoin, Jean-Pierre Perreault. Nucleic Acids Res 2010
147
20

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
20

G-quadruplexes: the beginning and end of UTRs.
Julian Leon Huppert, Anthony Bugaut, Sunita Kumari, Shankar Balasubramanian. Nucleic Acids Res 2008
286
20

New scoring system to identify RNA G-quadruplex folding.
Jean-Denis Beaudoin, Rachel Jodoin, Jean-Pierre Perreault. Nucleic Acids Res 2014
66
20


Identification of G-quadruplexes in long functional RNAs using 7-deazaguanine RNA.
Carika Weldon, Isabelle Behm-Ansmant, Laurence H Hurley, Glenn A Burley, Christiane Branlant, Ian C Eperon, Cyril Dominguez. Nat Chem Biol 2017
40
27

Telomerase downregulation induced by the G-quadruplex ligand 12459 in A549 cells is mediated by hTERT RNA alternative splicing.
Dennis Gomez, Thibault Lemarteleur, Laurent Lacroix, Patrick Mailliet, Jean-Louis Mergny, Jean-François Riou. Nucleic Acids Res 2004
164
20

Aven recognition of RNA G-quadruplexes regulates translation of the mixed lineage leukemia protooncogenes.
Palaniraja Thandapani, Jingwen Song, Valentina Gandin, Yutian Cai, Samuel G Rouleau, Jean-Michel Garant, Francois-Michel Boisvert, Zhenbao Yu, Jean-Pierre Perreault, Ivan Topisirovic,[...]. Elife 2015
60
20

Probing the G‑quadruplex from hsa-miR-3620-5p and inhibition of its interaction with the target sequence.
Wei Tan, Jiang Zhou, Jiangyong Gu, Ming Xu, Xiaojie Xu, Gu Yuan. Talanta 2016
21
52

A comparison of DNA and RNA quadruplex structures and stabilities.
Astrid Joachimi, Armin Benz, Jörg S Hartig. Bioorg Med Chem 2009
133
20

The G-quartet containing FMRP binding site in FMR1 mRNA is a potent exonic splicing enhancer.
Marie-Cécile Didiot, Zhaoxia Tian, Céline Schaeffer, Murugan Subramanian, Jean-Louis Mandel, Hervé Moine. Nucleic Acids Res 2008
121
20

Detecting RNA G-Quadruplexes (rG4s) in the Transcriptome.
Chun Kit Kwok, Giovanni Marsico, Shankar Balasubramanian. Cold Spring Harb Perspect Biol 2018
52
21

Amyloid Precursor Protein Translation Is Regulated by a 3'UTR Guanine Quadruplex.
Ezekiel Crenshaw, Brian P Leung, Chun Kit Kwok, Michal Sharoni, Kalee Olson, Neeraj P Sebastian, Sara Ansaloni, Reinhard Schweitzer-Stenner, Michael R Akins, Philip C Bevilacqua,[...]. PLoS One 2015
27
37



G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
847
18

G-quadruplexes and helicases.
Oscar Mendoza, Anne Bourdoncle, Jean-Baptiste Boulé, Robert M Brosh, Jean-Louis Mergny. Nucleic Acids Res 2016
234
18

RNA G-quadruplexes: emerging mechanisms in disease.
Anne Cammas, Stefania Millevoi. Nucleic Acids Res 2017
114
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.