A citation-based method for searching scientific literature

Iain Mathieson, Iosif Lazaridis, Nadin Rohland, Swapan Mallick, Nick Patterson, Songül Alpaslan Roodenberg, Eadaoin Harney, Kristin Stewardson, Daniel Fernandes, Mario Novak, Kendra Sirak, Cristina Gamba, Eppie R Jones, Bastien Llamas, Stanislav Dryomov, Joseph Pickrell, Juan Luís Arsuaga, José María Bermúdez de Castro, Eudald Carbonell, Fokke Gerritsen, Aleksandr Khokhlov, Pavel Kuznetsov, Marina Lozano, Harald Meller, Oleg Mochalov, Vyacheslav Moiseyev, Manuel A Rojo Guerra, Jacob Roodenberg, Josep Maria Vergès, Johannes Krause, Alan Cooper, Kurt W Alt, Dorcas Brown, David Anthony, Carles Lalueza-Fox, Wolfgang Haak, Ron Pinhasi, David Reich. Nature 2015
Times Cited: 540







List of co-cited articles
929 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Massive migration from the steppe was a source for Indo-European languages in Europe.
Wolfgang Haak, Iosif Lazaridis, Nick Patterson, Nadin Rohland, Swapan Mallick, Bastien Llamas, Guido Brandt, Susanne Nordenfelt, Eadaoin Harney, Kristin Stewardson,[...]. Nature 2015
602
52

Ancient human genomes suggest three ancestral populations for present-day Europeans.
Iosif Lazaridis, Nick Patterson, Alissa Mittnik, Gabriel Renaud, Swapan Mallick, Karola Kirsanow, Peter H Sudmant, Joshua G Schraiber, Sergi Castellano, Mark Lipson,[...]. Nature 2014
601
41

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
39

Ancient admixture in human history.
Nick Patterson, Priya Moorjani, Yontao Luo, Swapan Mallick, Nadin Rohland, Yiping Zhan, Teri Genschoreck, Teresa Webster, David Reich. Genetics 2012
38

The genetic history of Ice Age Europe.
Qiaomei Fu, Cosimo Posth, Mateja Hajdinjak, Martin Petr, Swapan Mallick, Daniel Fernandes, Anja Furtwängler, Wolfgang Haak, Matthias Meyer, Alissa Mittnik,[...]. Nature 2016
330
38

The genomic history of southeastern Europe.
Iain Mathieson, Songül Alpaslan-Roodenberg, Cosimo Posth, Anna Szécsényi-Nagy, Nadin Rohland, Swapan Mallick, Iñigo Olalde, Nasreen Broomandkhoshbacht, Francesca Candilio, Olivia Cheronet,[...]. Nature 2018
189
37

Population genomics of Bronze Age Eurasia.
Morten E Allentoft, Martin Sikora, Karl-Göran Sjögren, Simon Rasmussen, Morten Rasmussen, Jesper Stenderup, Peter B Damgaard, Hannes Schroeder, Torbjörn Ahlström, Lasse Vinner,[...]. Nature 2015
507
36

Genomic insights into the origin of farming in the ancient Near East.
Iosif Lazaridis, Dani Nadel, Gary Rollefson, Deborah C Merrett, Nadin Rohland, Swapan Mallick, Daniel Fernandes, Mario Novak, Beatriz Gamarra, Kendra Sirak,[...]. Nature 2016
347
34

Population structure and eigenanalysis.
Nick Patterson, Alkes L Price, David Reich. PLoS Genet 2006
32

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
30

The formation of human populations in South and Central Asia.
Vagheesh M Narasimhan, Nick Patterson, Priya Moorjani, Nadin Rohland, Rebecca Bernardos, Swapan Mallick, Iosif Lazaridis, Nathan Nakatsuka, Iñigo Olalde, Mark Lipson,[...]. Science 2019
142
29

ANGSD: Analysis of Next Generation Sequencing Data.
Thorfinn Sand Korneliussen, Anders Albrechtsen, Rasmus Nielsen. BMC Bioinformatics 2014
939
28

Fast model-based estimation of ancestry in unrelated individuals.
David H Alexander, John Novembre, Kenneth Lange. Genome Res 2009
27

The Beaker phenomenon and the genomic transformation of northwest Europe.
Iñigo Olalde, Selina Brace, Morten E Allentoft, Ian Armit, Kristian Kristiansen, Thomas Booth, Nadin Rohland, Swapan Mallick, Anna Szécsényi-Nagy, Alissa Mittnik,[...]. Nature 2018
175
27


Genome flux and stasis in a five millennium transect of European prehistory.
Cristina Gamba, Eppie R Jones, Matthew D Teasdale, Russell L McLaughlin, Gloria Gonzalez-Fortes, Valeria Mattiangeli, László Domboróczki, Ivett Kővári, Ildikó Pap, Alexandra Anders,[...]. Nat Commun 2014
303
26

HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing.
Hansi Weissensteiner, Dominic Pacher, Anita Kloss-Brandstätter, Lukas Forer, Günther Specht, Hans-Jürgen Bandelt, Florian Kronenberg, Antonio Salas, Sebastian Schönherr. Nucleic Acids Res 2016
379
25

Early farmers from across Europe directly descended from Neolithic Aegeans.
Zuzana Hofmanová, Susanne Kreutzer, Garrett Hellenthal, Christian Sell, Yoan Diekmann, David Díez-Del-Molino, Lucy van Dorp, Saioa López, Athanasios Kousathanas, Vivian Link,[...]. Proc Natl Acad Sci U S A 2016
168
24

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters.
Hákon Jónsson, Aurélien Ginolhac, Mikkel Schubert, Philip L F Johnson, Ludovic Orlando. Bioinformatics 2013
564
24

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Swapan Mallick, Heng Li, Mark Lipson, Iain Mathieson, Melissa Gymrek, Fernando Racimo, Mengyao Zhao, Niru Chennagiri, Susanne Nordenfelt, Arti Tandon,[...]. Nature 2016
589
23

The genomic history of the Iberian Peninsula over the past 8000 years.
Iñigo Olalde, Swapan Mallick, Nick Patterson, Nadin Rohland, Vanessa Villalba-Mouco, Marina Silva, Katharina Dulias, Ceiridwen J Edwards, Francesca Gandini, Maria Pala,[...]. Science 2019
104
23

Parallel palaeogenomic transects reveal complex genetic history of early European farmers.
Mark Lipson, Anna Szécsényi-Nagy, Swapan Mallick, Annamária Pósa, Balázs Stégmár, Victoria Keerl, Nadin Rohland, Kristin Stewardson, Matthew Ferry, Megan Michel,[...]. Nature 2017
134
23


Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.
Jesse Dabney, Michael Knapp, Isabelle Glocke, Marie-Theres Gansauge, Antje Weihmann, Birgit Nickel, Cristina Valdiosera, Nuria García, Svante Pääbo, Juan-Luis Arsuaga,[...]. Proc Natl Acad Sci U S A 2013
546
22

A revised timescale for human evolution based on ancient mitochondrial genomes.
Qiaomei Fu, Alissa Mittnik, Philip L F Johnson, Kirsten Bos, Martina Lari, Ruth Bollongino, Chengkai Sun, Liane Giemsch, Ralf Schmitz, Joachim Burger,[...]. Curr Biol 2013
287
22

The first horse herders and the impact of early Bronze Age steppe expansions into Asia.
Peter de Barros Damgaard, Rui Martiniano, Jack Kamm, J Víctor Moreno-Mayar, Guus Kroonen, Michaël Peyrot, Gojko Barjamovic, Simon Rasmussen, Claus Zacho, Nurbol Baimukhanov,[...]. Science 2018
120
22

Partial uracil-DNA-glycosylase treatment for screening of ancient DNA.
Nadin Rohland, Eadaoin Harney, Swapan Mallick, Susanne Nordenfelt, David Reich. Philos Trans R Soc Lond B Biol Sci 2015
195
21

137 ancient human genomes from across the Eurasian steppes.
Peter de Barros Damgaard, Nina Marchi, Simon Rasmussen, Michaël Peyrot, Gabriel Renaud, Thorfinn Korneliussen, J Víctor Moreno-Mayar, Mikkel Winther Pedersen, Amy Goldberg, Emma Usmanova,[...]. Nature 2018
136
20

Upper Palaeolithic genomes reveal deep roots of modern Eurasians.
Eppie R Jones, Gloria Gonzalez-Fortes, Sarah Connell, Veronika Siska, Anders Eriksson, Rui Martiniano, Russell L McLaughlin, Marcos Gallego Llorente, Lara M Cassidy, Cristina Gamba,[...]. Nat Commun 2015
184
20

Early Neolithic genomes from the eastern Fertile Crescent.
Farnaz Broushaki, Mark G Thomas, Vivian Link, Saioa López, Lucy van Dorp, Karola Kirsanow, Zuzana Hofmanová, Yoan Diekmann, Lara M Cassidy, David Díez-Del-Molino,[...]. Science 2016
112
19

Estimating genetic kin relationships in prehistoric populations.
Jose Manuel Monroy Kuhn, Mattias Jakobsson, Torsten Günther. PLoS One 2018
82
21

Second-generation PLINK: rising to the challenge of larger and richer datasets.
Christopher C Chang, Carson C Chow, Laurent Cam Tellier, Shashaank Vattikuti, Shaun M Purcell, James J Lee. Gigascience 2015
18

An early modern human from Romania with a recent Neanderthal ancestor.
Qiaomei Fu, Mateja Hajdinjak, Oana Teodora Moldovan, Silviu Constantin, Swapan Mallick, Pontus Skoglund, Nick Patterson, Nadin Rohland, Iosif Lazaridis, Birgit Nickel,[...]. Nature 2015
268
17

Genetic origins of the Minoans and Mycenaeans.
Iosif Lazaridis, Alissa Mittnik, Nick Patterson, Swapan Mallick, Nadin Rohland, Saskia Pfrengle, Anja Furtwängler, Alexander Peltzer, Cosimo Posth, Andonis Vasilakis,[...]. Nature 2017
81
20

Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation.
Torsten Günther, Helena Malmström, Emma M Svensson, Ayça Omrak, Federico Sánchez-Quinto, Gülşah M Kılınç, Maja Krzewińska, Gunilla Eriksson, Magdalena Fraser, Hanna Edlund,[...]. PLoS Biol 2018
65
24

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans.
Maanasa Raghavan, Pontus Skoglund, Kelly E Graf, Mait Metspalu, Anders Albrechtsen, Ida Moltke, Simon Rasmussen, Thomas W Stafford, Ludovic Orlando, Ene Metspalu,[...]. Nature 2014
360
16

Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia.
Joseph H Marcus, Cosimo Posth, Harald Ringbauer, Luca Lai, Robin Skeates, Carlo Sidore, Jessica Beckett, Anja Furtwängler, Anna Olivieri, Charleston W K Chiang,[...]. Nat Commun 2020
42
38

The Demographic Development of the First Farmers in Anatolia.
Gülşah Merve Kılınç, Ayça Omrak, Füsun Özer, Torsten Günther, Ali Metin Büyükkarakaya, Erhan Bıçakçı, Douglas Baird, Handan Melike Dönertaş, Ayshin Ghalichi, Reyhan Yaka,[...]. Curr Biol 2016
88
18

Genome sequence of a 45,000-year-old modern human from western Siberia.
Qiaomei Fu, Heng Li, Priya Moorjani, Flora Jay, Sergey M Slepchenko, Aleksei A Bondarev, Philip L F Johnson, Ayinuer Aximu-Petri, Kay Prüfer, Cesare de Filippo,[...]. Nature 2014
405
16

The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean.
Daniel M Fernandes, Alissa Mittnik, Iñigo Olalde, Iosif Lazaridis, Olivia Cheronet, Nadin Rohland, Swapan Mallick, Rebecca Bernardos, Nasreen Broomandkhoshbacht, Jens Carlsson,[...]. Nat Ecol Evol 2020
37
40

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers.
Martin Sikora, Andaine Seguin-Orlando, Vitor C Sousa, Anders Albrechtsen, Thorfinn Korneliussen, Amy Ko, Simon Rasmussen, Isabelle Dupanloup, Philip R Nigst, Marjolein D Bosch,[...]. Science 2017
105
15

Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA.
Gabriel Renaud, Viviane Slon, Ana T Duggan, Janet Kelso. Genome Biol 2015
163
14

The genetic prehistory of the Baltic Sea region.
Alissa Mittnik, Chuan-Chao Wang, Saskia Pfrengle, Mantas Daubaras, Gunita Zariņa, Fredrik Hallgren, Raili Allmäe, Valery Khartanovich, Vyacheslav Moiseyev, Mari Tõrv,[...]. Nat Commun 2018
77
18

Ancient genomes indicate population replacement in Early Neolithic Britain.
Selina Brace, Yoan Diekmann, Thomas J Booth, Lucy van Dorp, Zuzana Faltyskova, Nadin Rohland, Swapan Mallick, Iñigo Olalde, Matthew Ferry, Megan Michel,[...]. Nat Ecol Evol 2019
45
31

DNA analysis of an early modern human from Tianyuan Cave, China.
Qiaomei Fu, Matthias Meyer, Xing Gao, Udo Stenzel, Hernán A Burbano, Janet Kelso, Svante Pääbo. Proc Natl Acad Sci U S A 2013
253
14

The population genomics of archaeological transition in west Iberia: Investigation of ancient substructure using imputation and haplotype-based methods.
Rui Martiniano, Lara M Cassidy, Ros Ó'Maoldúin, Russell McLaughlin, Nuno M Silva, Licinio Manco, Daniel Fidalgo, Tania Pereira, Maria J Coelho, Miguel Serra,[...]. PLoS Genet 2017
57
22

Kinship-based social inequality in Bronze Age Europe.
Alissa Mittnik, Ken Massy, Corina Knipper, Fabian Wittenborn, Ronny Friedrich, Saskia Pfrengle, Marta Burri, Nadine Carlichi-Witjes, Heidi Deeg, Anja Furtwängler,[...]. Science 2019
49
26

Neolithic and Bronze Age migration to Ireland and establishment of the insular Atlantic genome.
Lara M Cassidy, Rui Martiniano, Eileen M Murphy, Matthew D Teasdale, James Mallory, Barrie Hartwell, Daniel G Bradley. Proc Natl Acad Sci U S A 2016
101
13

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
13

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform.
Martin Kircher, Susanna Sawyer, Matthias Meyer. Nucleic Acids Res 2012
576
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.