A citation-based method for searching scientific literature

Andrew E Jaffe, Yuan Gao, Amy Deep-Soboslay, Ran Tao, Thomas M Hyde, Daniel R Weinberger, Joel E Kleinman. Nat Neurosci 2016
Times Cited: 232







List of co-cited articles
819 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Methylation QTLs in the developing brain and their enrichment in schizophrenia risk loci.
Eilis Hannon, Helen Spiers, Joana Viana, Ruth Pidsley, Joe Burrage, Therese M Murphy, Claire Troakes, Gustavo Turecki, Michael C O'Donovan, Leonard C Schalkwyk,[...]. Nat Neurosci 2016
180
27

Gene expression elucidates functional impact of polygenic risk for schizophrenia.
Menachem Fromer, Panos Roussos, Solveig K Sieberts, Jessica S Johnson, David H Kavanagh, Thanneer M Perumal, Douglas M Ruderfer, Edwin C Oh, Aaron Topol, Hardik R Shah,[...]. Nat Neurosci 2016
447
21

An integrated genetic-epigenetic analysis of schizophrenia: evidence for co-localization of genetic associations and differential DNA methylation.
Eilis Hannon, Emma Dempster, Joana Viana, Joe Burrage, Adam R Smith, Ruby Macdonald, David St Clair, Colette Mustard, Gerome Breen, Sebastian Therman,[...]. Genome Biol 2016
142
20

Association of DNA Methylation Differences With Schizophrenia in an Epigenome-Wide Association Study.
Carolina Montano, Margaret A Taub, Andrew Jaffe, Eirikur Briem, Jason I Feinberg, Rakel Trygvadottir, Adrian Idrizi, Arni Runarsson, Birna Berndsen, Ruben C Gur,[...]. JAMA Psychiatry 2016
81
20

Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis.
Andrew E Jaffe, Richard E Straub, Joo Heon Shin, Ran Tao, Yuan Gao, Leonardo Collado-Torres, Tony Kam-Thong, Hualin S Xi, Jie Quan, Qiang Chen,[...]. Nat Neurosci 2018
121
17

Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.
Antonio F PardiƱas, Peter Holmans, Andrew J Pocklington, Valentina Escott-Price, Stephan Ripke, Noa Carrera, Sophie E Legge, Sophie Bishop, Darren Cameron, Marian L Hamshere,[...]. Nat Genet 2018
506
16

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
16

Global epigenomic reconfiguration during mammalian brain development.
Ryan Lister, Eran A Mukamel, Joseph R Nery, Mark Urich, Clare A Puddifoot, Nicholas D Johnson, Jacinta Lucero, Yun Huang, Andrew J Dwork, Matthew D Schultz,[...]. Science 2013
14

An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome.
Bernard Ng, Charles C White, Hans-Ulrich Klein, Solveig K Sieberts, Cristin McCabe, Ellis Patrick, Jishu Xu, Lei Yu, Chris Gaiteri, David A Bennett,[...]. Nat Neurosci 2017
131
13

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
13

Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder.
Michael J Gandal, Pan Zhang, Evi Hadjimichael, Rebecca L Walker, Chao Chen, Shuang Liu, Hyejung Won, Harm van Bakel, Merina Varghese, Yongjun Wang,[...]. Science 2018
298
13

Methylomic profiling of human brain tissue supports a neurodevelopmental origin for schizophrenia.
Ruth Pidsley, Joana Viana, Eilis Hannon, Helen Spiers, Claire Troakes, Safa Al-Saraj, Naguib Mechawar, Gustavo Turecki, Leonard C Schalkwyk, Nicholas J Bray,[...]. Genome Biol 2014
95
12

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
12



Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets.
Zhihong Zhu, Futao Zhang, Han Hu, Andrew Bakshi, Matthew R Robinson, Joseph E Powell, Grant W Montgomery, Michael E Goddard, Naomi R Wray, Peter M Visscher,[...]. Nat Genet 2016
630
11

Genome-wide DNA methylation analysis of human brain tissue from schizophrenia patients.
L F Wockner, E P Noble, B R Lawford, R McD Young, C P Morris, V L J Whitehall, J Voisey. Transl Psychiatry 2014
166
11

Schizophrenia-associated methylomic variation: molecular signatures of disease and polygenic risk burden across multiple brain regions.
Joana Viana, Eilis Hannon, Emma Dempster, Ruth Pidsley, Ruby Macdonald, Olivia Knox, Helen Spiers, Claire Troakes, Safa Al-Saraj, Gustavo Turecki,[...]. Hum Mol Genet 2017
53
20

Genetic insights into the neurodevelopmental origins of schizophrenia.
Rebecca Birnbaum, Daniel R Weinberger. Nat Rev Neurosci 2017
164
11

Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.
Shaun M Purcell, Naomi R Wray, Jennifer L Stone, Peter M Visscher, Michael C O'Donovan, Patrick F Sullivan, Pamela Sklar. Nature 2009
10

Schizophrenia as a complex trait: evidence from a meta-analysis of twin studies.
Patrick F Sullivan, Kenneth S Kendler, Michael C Neale. Arch Gen Psychiatry 2003
10

DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
10

Integrative functional genomic analysis of human brain development and neuropsychiatric risks.
Mingfeng Li, Gabriel Santpere, Yuka Imamura Kawasawa, Oleg V Evgrafov, Forrest O Gulden, Sirisha Pochareddy, Susan M Sunkin, Zhen Li, Yurae Shin, Ying Zhu,[...]. Science 2018
178
10

Schizophrenia risk from complex variation of complement component 4.
Aswin Sekar, Allison R Bialas, Heather de Rivera, Avery Davis, Timothy R Hammond, Nolan Kamitaki, Katherine Tooley, Jessy Presumey, Matthew Baum, Vanessa Van Doren,[...]. Nature 2016
9

Epigenomic profiling reveals DNA-methylation changes associated with major psychosis.
Jonathan Mill, Thomas Tang, Zachary Kaminsky, Tarang Khare, Simin Yazdanpanah, Luigi Bouchard, Peixin Jia, Abbas Assadzadeh, James Flanagan, Axel Schumacher,[...]. Am J Hum Genet 2008
516
9

Methylomic profiling implicates cortical deregulation of ANK1 in Alzheimer's disease.
Katie Lunnon, Rebecca Smith, Eilis Hannon, Philip L De Jager, Gyan Srivastava, Manuela Volta, Claire Troakes, Safa Al-Sarraj, Joe Burrage, Ruby Macdonald,[...]. Nat Neurosci 2014
278
9

The PsychENCODE project.
Schahram Akbarian, Chunyu Liu, James A Knowles, Flora M Vaccarino, Peggy J Farnham, Gregory E Crawford, Andrew E Jaffe, Dalila Pinto, Stella Dracheva, Daniel H Geschwind,[...]. Nat Neurosci 2015
172
8




Methylome-wide association study of schizophrenia: identifying blood biomarker signatures of environmental insults.
Karolina A Aberg, Joseph L McClay, Srilaxmi Nerella, Shaunna Clark, Gaurav Kumar, Wenan Chen, Amit N Khachane, Linying Xie, Alexandra Hudson, Guimin Gao,[...]. JAMA Psychiatry 2014
147
8


Chromosome conformation elucidates regulatory relationships in developing human brain.
Hyejung Won, Luis de la Torre-Ubieta, Jason L Stein, Neelroop N Parikshak, Jerry Huang, Carli K Opland, Michael J Gandal, Gavin J Sutton, Farhad Hormozdiari, Daning Lu,[...]. Nature 2016
236
8

WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
8

Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci.
Philip L De Jager, Gyan Srivastava, Katie Lunnon, Jeremy Burgess, Leonard C Schalkwyk, Lei Yu, Matthew L Eaton, Brendan T Keenan, Jason Ernst, Cristin McCabe,[...]. Nat Neurosci 2014
452
8

Comprehensive functional genomic resource and integrative model for the human brain.
Daifeng Wang, Shuang Liu, Jonathan Warrell, Hyejung Won, Xu Shi, Fabio C P Navarro, Declan Clarke, Mengting Gu, Prashant Emani, Yucheng T Yang,[...]. Science 2018
214
8

Cell-specific histone modification maps in the human frontal lobe link schizophrenia risk to the neuronal epigenome.
Kiran Girdhar, Gabriel E Hoffman, Yan Jiang, Leanne Brown, Marija Kundakovic, Mads E Hauberg, Nancy J Francoeur, Ying-Chih Wang, Hardik Shah, David H Kavanagh,[...]. Nat Neurosci 2018
42
19

Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation.
Amanda J Price, Leonardo Collado-Torres, Nikolay A Ivanov, Wei Xia, Emily E Burke, Joo Heon Shin, Ran Tao, Liang Ma, Yankai Jia, Thomas M Hyde,[...]. Genome Biol 2019
22
36

Genetic effects on gene expression across human tissues.
Alexis Battle, Christopher D Brown, Barbara E Engelhardt, Stephen B Montgomery. Nature 2017
8


Temporal dynamics and genetic control of transcription in the human prefrontal cortex.
Carlo Colantuoni, Barbara K Lipska, Tianzhang Ye, Thomas M Hyde, Ran Tao, Jeffrey T Leek, Elizabeth A Colantuoni, Abdel G Elkahloun, Mary M Herman, Daniel R Weinberger,[...]. Nature 2011
466
7

A human-specific AS3MT isoform and BORCS7 are molecular risk factors in the 10q24.32 schizophrenia-associated locus.
Ming Li, Andrew E Jaffe, Richard E Straub, Ran Tao, Joo Heon Shin, Yanhong Wang, Qiang Chen, Chao Li, Yankai Jia, Kazutaka Ohi,[...]. Nat Med 2016
86
8

Disease-associated epigenetic changes in monozygotic twins discordant for schizophrenia and bipolar disorder.
Emma L Dempster, Ruth Pidsley, Leonard C Schalkwyk, Sheena Owens, Anna Georgiades, Fergus Kane, Sridevi Kalidindi, Marco Picchioni, Eugenia Kravariti, Timothea Toulopoulou,[...]. Hum Mol Genet 2011
284
7

Methylomic trajectories across human fetal brain development.
Helen Spiers, Eilis Hannon, Leonard C Schalkwyk, Rebecca Smith, Chloe C Y Wong, Michael C O'Donovan, Nicholas J Bray, Jonathan Mill. Genome Res 2015
153
7

Genome-wide mapping of genetic determinants influencing DNA methylation and gene expression in human hippocampus.
Herbert Schulz, Ann-Kathrin Ruppert, Stefan Herms, Christiane Wolf, Nazanin Mirza-Schreiber, Oliver Stegle, Darina Czamara, Andreas J Forstner, Sugirthan Sivalingam, Susanne Schoch,[...]. Nat Commun 2017
32
21

Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia.
Julien Bryois, Melanie E Garrett, Lingyun Song, Alexias Safi, Paola Giusti-Rodriguez, Graham D Johnson, Annie W Shieh, Alfonso Buil, John F Fullard, Panos Roussos,[...]. Nat Commun 2018
49
14

Contribution of copy number variants to schizophrenia from a genome-wide study of 41,321 subjects.
Christian R Marshall, Daniel P Howrigan, Daniele Merico, Bhooma Thiruvahindrapuram, Wenting Wu, Douglas S Greer, Danny Antaki, Aniket Shetty, Peter A Holmans, Dalila Pinto,[...]. Nat Genet 2017
398
7

A data-driven approach to preprocessing Illumina 450K methylation array data.
Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk. BMC Genomics 2013
482
7

DNA methylation changes in the postmortem dorsolateral prefrontal cortex of patients with schizophrenia.
Shusuke Numata, Tianzhang Ye, Mary Herman, Barbara K Lipska. Front Genet 2014
43
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.