A citation-based method for searching scientific literature

Anton S Petrov, Burak Gulen, Ashlyn M Norris, Nicholas A Kovacs, Chad R Bernier, Kathryn A Lanier, George E Fox, Stephen C Harvey, Roger M Wartell, Nicholas V Hud, Loren Dean Williams. Proc Natl Acad Sci U S A 2015
Times Cited: 117







List of co-cited articles
1273 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Evolution of the ribosome at atomic resolution.
Anton S Petrov, Chad R Bernier, Chiaolong Hsiao, Ashlyn M Norris, Nicholas A Kovacs, Chris C Waterbury, Victor G Stepanov, Stephen C Harvey, George E Fox, Roger M Wartell,[...]. Proc Natl Acad Sci U S A 2014
96
33

Origin and evolution of the ribosome.
George E Fox. Cold Spring Harb Perspect Biol 2010
124
26

Ribosomal history reveals origins of modern protein synthesis.
Ajith Harish, Gustavo Caetano-Anollés. PLoS One 2012
86
26

A hierarchical model for evolution of 23S ribosomal RNA.
Konstantin Bokov, Sergey V Steinberg. Nature 2009
136
22

Peeling the onion: ribosomes are ancient molecular fossils.
Chiaolong Hsiao, Srividya Mohan, Benson K Kalahar, Loren Dean Williams. Mol Biol Evol 2009
84
25

Frozen in Time: The History of Proteins.
Nicholas A Kovacs, Anton S Petrov, Kathryn A Lanier, Loren Dean Williams. Mol Biol Evol 2017
38
50

One core, two shells: bacterial and eukaryotic ribosomes.
Sergey Melnikov, Adam Ben-Shem, Nicolas Garreau de Loubresse, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Nat Struct Mol Biol 2012
236
17

Root of the Tree: The Significance, Evolution, and Origins of the Ribosome.
Jessica C Bowman, Anton S Petrov, Moran Frenkel-Pinter, Petar I Penev, Loren Dean Williams. Chem Rev 2020
41
39

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.
Odile Lecompte, Raymond Ripp, Jean-Claude Thierry, Dino Moras, Olivier Poch. Nucleic Acids Res 2002
231
15

The origin of the genetic code.
F H Crick. J Mol Biol 1968
15

The ribosome as a missing link in the evolution of life.
Meredith Root-Bernstein, Robert Root-Bernstein. J Theor Biol 2015
67
22

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
N Ban, P Nissen, J Hansen, P B Moore, T A Steitz. Science 2000
15

Piecemeal Buildup of the Genetic Code, Ribosomes, and Genomes from Primordial tRNA Building Blocks.
Derek Caetano-Anollés, Gustavo Caetano-Anollés. Life (Basel) 2016
34
44

The ribosome challenge to the RNA world.
Jessica C Bowman, Nicholas V Hud, Loren Dean Williams. J Mol Evol 2015
42
33

Phylogenetic structure of the prokaryotic domain: the primary kingdoms.
C R Woese, G E Fox. Proc Natl Acad Sci U S A 1977
13



The RNA World: molecular cooperation at the origins of life.
Paul G Higgs, Niles Lehman. Nat Rev Genet 2015
213
12

Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution.
Jean-Paul Armache, Andreas M Anger, Viter Márquez, Sibylle Franckenberg, Thomas Fröhlich, Elizabeth Villa, Otto Berninghausen, Michael Thomm, Georg J Arnold, Roland Beckmann,[...]. Nucleic Acids Res 2013
46
26

RiboVision suite for visualization and analysis of ribosomes.
Chad R Bernier, Anton S Petrov, Chris C Waterbury, James Jett, Fengbo Li, Larry E Freil, Xiao Xiong, Lan Wang, Blacki L R Migliozzi, Eli Hershkovits,[...]. Faraday Discuss 2014
67
16


A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
341
11

RNA-amino acid binding: a stereochemical era for the genetic code.
Michael Yarus, Jeremy Joseph Widmann, Rob Knight. J Mol Evol 2009
109
11


The evolution of the ribosome and the genetic code.
Hyman Hartman, Temple F Smith. Life (Basel) 2014
36
27

Origin and Evolution of the Universal Genetic Code.
Eugene V Koonin, Artem S Novozhilov. Annu Rev Genet 2017
66
15

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
749
10

Molecular paleontology: a biochemical model of the ancestral ribosome.
Chiaolong Hsiao, Timothy K Lenz, Jessica K Peters, Po-Yu Fang, Dana M Schneider, Eric J Anderson, Thanawadee Preeprem, Jessica C Bowman, Eric B O'Neill, Lively Lie,[...]. Nucleic Acids Res 2013
30
33

Common origins of RNA, protein and lipid precursors in a cyanosulfidic protometabolism.
Bhavesh H Patel, Claudia Percivalle, Dougal J Ritson, Colm D Duffy, John D Sutherland. Nat Chem 2015
327
9


Ribosomal small subunit domains radiate from a central core.
Burak Gulen, Anton S Petrov, C Denise Okafor, Drew Vander Wood, Eric B O'Neill, Nicholas V Hud, Loren Dean Williams. Sci Rep 2016
17
52

A vocabulary of ancient peptides at the origin of folded proteins.
Vikram Alva, Johannes Söding, Andrei N Lupas. Elife 2015
108
9

The origin and evolution of the ribosome.
Temple F Smith, Jung C Lee, Robin R Gutell, Hyman Hartman. Biol Direct 2008
51
17

The structural basis of ribosome activity in peptide bond synthesis.
P Nissen, J Hansen, N Ban, P B Moore, T A Steitz. Science 2000
9

An operational RNA code for amino acids and possible relationship to genetic code.
P Schimmel, R Giegé, D Moras, S Yokoyama. Proc Natl Acad Sci U S A 1993
331
9

A possible circular RNA at the origin of life.
Jacques Demongeot, Andrés Moreira. J Theor Biol 2007
41
21


Imprints of the genetic code in the ribosome.
David B F Johnson, Lei Wang. Proc Natl Acad Sci U S A 2010
51
17

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.
Jamie J Cannone, Sankar Subramanian, Murray N Schnare, James R Collett, Lisa M D'Souza, Yushi Du, Brian Feng, Nan Lin, Lakshmi V Madabusi, Kirsten M Müller,[...]. BMC Bioinformatics 2002
9


Ancient machinery embedded in the contemporary ribosome.
Matthew J Belousoff, Chen Davidovich, Ella Zimmerman, Yaron Caspi, Itai Wekselman, Lin Rozenszajn, Tal Shapira, Ofir Sade-Falk, Leena Taha, Anat Bashan,[...]. Biochem Soc Trans 2010
34
26


The universal ancestor.
C Woese. Proc Natl Acad Sci U S A 1998
529
8

The lipid world.
D Segré, D Ben-Eli, D W Deamer, D Lancet. Orig Life Evol Biosph 2001
279
8

Prebiotic chemistry and the origin of the RNA world.
Leslie E Orgel. Crit Rev Biochem Mol Biol 2004
500
8

The origins of the RNA world.
Michael P Robertson, Gerald F Joyce. Cold Spring Harb Perspect Biol 2012
231
8

Imprint of Ancient Evolution on rRNA Folding.
Kathryn A Lanier, Shreyas S Athavale, Anton S Petrov, Roger Wartell, Loren Dean Williams. Biochemistry 2016
12
66


Ribosomal protein-sequence block structure suggests complex prokaryotic evolution with implications for the origin of eukaryotes.
Prashanth Vishwanath, Paola Favaretto, Hyman Hartman, Scott C Mohr, Temple F Smith. Mol Phylogenet Evol 2004
35
22



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.