A citation-based method for searching scientific literature

Kristoffer Forslund, Falk Hildebrand, Trine Nielsen, Gwen Falony, Emmanuelle Le Chatelier, Shinichi Sunagawa, Edi Prifti, Sara Vieira-Silva, Valborg Gudmundsdottir, Helle K Pedersen, Manimozhiyan Arumugam, Karsten Kristiansen, Anita Yvonne Voigt, Henrik Vestergaard, Rajna Hercog, Paul Igor Costea, Jens Roat Kultima, Junhua Li, Torben Jørgensen, Florence Levenez, Joël Dore, H Bjørn Nielsen, Søren Brunak, Jeroen Raes, Torben Hansen, Jun Wang, S Dusko Ehrlich, Peer Bork, Oluf Pedersen. Nature 2015
Times Cited: 909







List of co-cited articles
964 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Metformin alters the gut microbiome of individuals with treatment-naive type 2 diabetes, contributing to the therapeutic effects of the drug.
Hao Wu, Eduardo Esteve, Valentina Tremaroli, Muhammad Tanweer Khan, Robert Caesar, Louise Mannerås-Holm, Marcus Ståhlman, Lisa M Olsson, Matteo Serino, Mercè Planas-Fèlix,[...]. Nat Med 2017
577
37

A metagenome-wide association study of gut microbiota in type 2 diabetes.
Junjie Qin, Yingrui Li, Zhiming Cai, Shenghui Li, Jianfeng Zhu, Fan Zhang, Suisha Liang, Wenwei Zhang, Yuanlin Guan, Dongqian Shen,[...]. Nature 2012
35

Gut metagenome in European women with normal, impaired and diabetic glucose control.
Fredrik H Karlsson, Valentina Tremaroli, Intawat Nookaew, Göran Bergström, Carl Johan Behre, Björn Fagerberg, Jens Nielsen, Fredrik Bäckhed. Nature 2013
27

Gut microbiota and intestinal FXR mediate the clinical benefits of metformin.
Lulu Sun, Cen Xie, Guang Wang, Yue Wu, Qing Wu, Xuemei Wang, Jia Liu, Yangyang Deng, Jialin Xia, Bo Chen,[...]. Nat Med 2018
260
19

A human gut microbial gene catalogue established by metagenomic sequencing.
Junjie Qin, Ruiqiang Li, Jeroen Raes, Manimozhiyan Arumugam, Kristoffer Solvsten Burgdorf, Chaysavanh Manichanh, Trine Nielsen, Nicolas Pons, Florence Levenez, Takuji Yamada,[...]. Nature 2010
18

Metformin Is Associated With Higher Relative Abundance of Mucin-Degrading Akkermansia muciniphila and Several Short-Chain Fatty Acid-Producing Microbiota in the Gut.
Jacobo de la Cuesta-Zuluaga, Noel T Mueller, Vanessa Corrales-Agudelo, Eliana P Velásquez-Mejía, Jenny A Carmona, José M Abad, Juan S Escobar. Diabetes Care 2017
262
18

Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults.
Nadja Larsen, Finn K Vogensen, Frans W J van den Berg, Dennis Sandris Nielsen, Anne Sofie Andreasen, Bente K Pedersen, Waleed Abu Al-Soud, Søren J Sørensen, Lars H Hansen, Mogens Jakobsen. PLoS One 2010
17

Extensive impact of non-antibiotic drugs on human gut bacteria.
Lisa Maier, Mihaela Pruteanu, Michael Kuhn, Georg Zeller, Anja Telzerow, Exene Erin Anderson, Ana Rita Brochado, Keith Conrad Fernandez, Hitomi Dose, Hirotada Mori,[...]. Nature 2018
651
15

Metformin-induced changes of the gut microbiota in healthy young men: results of a non-blinded, one-armed intervention study.
Thomas Bryrup, Cæcilie W Thomsen, Timo Kern, Kristine H Allin, Ivan Brandslund, Niklas R Jørgensen, Henrik Vestergaard, Torben Hansen, Tue H Hansen, Oluf Pedersen,[...]. Diabetologia 2019
58
25

Richness of human gut microbiome correlates with metabolic markers.
Emmanuelle Le Chatelier, Trine Nielsen, Junjie Qin, Edi Prifti, Falk Hildebrand, Gwen Falony, Mathieu Almeida, Manimozhiyan Arumugam, Jean-Michel Batto, Sean Kennedy,[...]. Nature 2013
15

An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice.
Na-Ri Shin, June-Chul Lee, Hae-Youn Lee, Min-Soo Kim, Tae Woong Whon, Myung-Shik Lee, Jin-Woo Bae. Gut 2014
784
14

Human gut microbiota changes reveal the progression of glucose intolerance.
Xiuying Zhang, Dongqian Shen, Zhiwei Fang, Zhuye Jie, Xinmin Qiu, Chunfang Zhang, Yingli Chen, Linong Ji. PLoS One 2013
381
14

An obesity-associated gut microbiome with increased capacity for energy harvest.
Peter J Turnbaugh, Ruth E Ley, Michael A Mahowald, Vincent Magrini, Elaine R Mardis, Jeffrey I Gordon. Nature 2006
13

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity.
Alexandra Zhernakova, Alexander Kurilshikov, Marc Jan Bonder, Ettje F Tigchelaar, Melanie Schirmer, Tommi Vatanen, Zlatan Mujagic, Arnau Vich Vila, Gwen Falony, Sara Vieira-Silva,[...]. Science 2016
755
13

Population-level analysis of gut microbiome variation.
Gwen Falony, Marie Joossens, Sara Vieira-Silva, Jun Wang, Youssef Darzi, Karoline Faust, Alexander Kurilshikov, Marc Jan Bonder, Mireia Valles-Colomer, Doris Vandeputte,[...]. Science 2016
881
12

A core gut microbiome in obese and lean twins.
Peter J Turnbaugh, Micah Hamady, Tanya Yatsunenko, Brandi L Cantarel, Alexis Duncan, Ruth E Ley, Mitchell L Sogin, William J Jones, Bruce A Roe, Jason P Affourtit,[...]. Nature 2009
12

Human gut microbes impact host serum metabolome and insulin sensitivity.
Helle Krogh Pedersen, Valborg Gudmundsdottir, Henrik Bjørn Nielsen, Tuulia Hyotylainen, Trine Nielsen, Benjamin A H Jensen, Kristoffer Forslund, Falk Hildebrand, Edi Prifti, Gwen Falony,[...]. Nature 2016
775
12

Human gut microbiome viewed across age and geography.
Tanya Yatsunenko, Federico E Rey, Mark J Manary, Indi Trehan, Maria Gloria Dominguez-Bello, Monica Contreras, Magda Magris, Glida Hidalgo, Robert N Baldassano, Andrey P Anokhin,[...]. Nature 2012
11

Novel gut-based pharmacology of metformin in patients with type 2 diabetes mellitus.
Antonella Napolitano, Sam Miller, Andrew W Nicholls, David Baker, Stephanie Van Horn, Elizabeth Thomas, Deepak Rajpal, Aaron Spivak, James R Brown, Derek J Nunez. PLoS One 2014
161
11

Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome.
Anne Vrieze, Els Van Nood, Frits Holleman, Jarkko Salojärvi, Ruud S Kootte, Joep F W M Bartelsman, Geesje M Dallinga-Thie, Mariette T Ackermans, Mireille J Serlie, Raish Oozeer,[...]. Gastroenterology 2012
11

The treatment-naive microbiome in new-onset Crohn's disease.
Dirk Gevers, Subra Kugathasan, Lee A Denson, Yoshiki Vázquez-Baeza, Will Van Treuren, Boyu Ren, Emma Schwager, Dan Knights, Se Jin Song, Moran Yassour,[...]. Cell Host Microbe 2014
10


Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity.
Amandine Everard, Clara Belzer, Lucie Geurts, Janneke P Ouwerkerk, Céline Druart, Laure B Bindels, Yves Guiot, Muriel Derrien, Giulio G Muccioli, Nathalie M Delzenne,[...]. Proc Natl Acad Sci U S A 2013
10

Diet rapidly and reproducibly alters the human gut microbiome.
Lawrence A David, Corinne F Maurice, Rachel N Carmody, David B Gootenberg, Julie E Button, Benjamin E Wolfe, Alisha V Ling, A Sloan Devlin, Yug Varma, Michael A Fischbach,[...]. Nature 2014
10

DADA2: High-resolution sample inference from Illumina amplicon data.
Benjamin J Callahan, Paul J McMurdie, Michael J Rosen, Andrew W Han, Amy Jo A Johnson, Susan P Holmes. Nat Methods 2016
10

Personalized Nutrition by Prediction of Glycemic Responses.
David Zeevi, Tal Korem, Niv Zmora, David Israeli, Daphna Rothschild, Adina Weinberger, Orly Ben-Yacov, Dar Lador, Tali Avnit-Sagi, Maya Lotan-Pompan,[...]. Cell 2015
906
9

Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology.
Maria Carlota Dao, Amandine Everard, Judith Aron-Wisnewsky, Nataliya Sokolovska, Edi Prifti, Eric O Verger, Brandon D Kayser, Florence Levenez, Julien Chilloux, Lesley Hoyles,[...]. Gut 2016
744
9

Proton pump inhibitors affect the gut microbiome.
Floris Imhann, Marc Jan Bonder, Arnau Vich Vila, Jingyuan Fu, Zlatan Mujagic, Lisa Vork, Ettje F Tigchelaar, Soesma A Jankipersadsing, Maria Carmen Cenit, Hermie J M Harmsen,[...]. Gut 2016
480
9

Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study.
Clara Depommier, Amandine Everard, Céline Druart, Hubert Plovier, Matthias Van Hul, Sara Vieira-Silva, Gwen Falony, Jeroen Raes, Dominique Maiter, Nathalie M Delzenne,[...]. Nat Med 2019
452
9

Alterations of the human gut microbiome in liver cirrhosis.
Nan Qin, Fengling Yang, Ang Li, Edi Prifti, Yanfei Chen, Li Shao, Jing Guo, Emmanuelle Le Chatelier, Jian Yao, Lingjiao Wu,[...]. Nature 2014
933
9

Modulation of gut microbiota by berberine and metformin during the treatment of high-fat diet-induced obesity in rats.
Xu Zhang, Yufeng Zhao, Jia Xu, Zhengsheng Xue, Menghui Zhang, Xiaoyan Pang, Xiaojun Zhang, Liping Zhao. Sci Rep 2015
306
9

Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases.
Serena Sanna, Natalie R van Zuydam, Anubha Mahajan, Alexander Kurilshikov, Arnau Vich Vila, Urmo Võsa, Zlatan Mujagic, Ad A M Masclee, Daisy M A E Jonkers, Marije Oosting,[...]. Nat Genet 2019
276
9

Statin therapy is associated with lower prevalence of gut microbiota dysbiosis.
Sara Vieira-Silva, Gwen Falony, Eugeni Belda, Trine Nielsen, Judith Aron-Wisnewsky, Rima Chakaroun, Sofia K Forslund, Karen Assmann, Mireia Valles-Colomer, Thi Thuy Duyen Nguyen,[...]. Nature 2020
66
13

Metabolic endotoxemia initiates obesity and insulin resistance.
Patrice D Cani, Jacques Amar, Miguel Angel Iglesias, Marjorie Poggi, Claude Knauf, Delphine Bastelica, Audrey M Neyrinck, Francesca Fava, Kieran M Tuohy, Chantal Chabo,[...]. Diabetes 2007
9

An integrated catalog of reference genes in the human gut microbiome.
Junhua Li, Huijue Jia, Xianghang Cai, Huanzi Zhong, Qiang Feng, Shinichi Sunagawa, Manimozhiyan Arumugam, Jens Roat Kultima, Edi Prifti, Trine Nielsen,[...]. Nat Biotechnol 2014
843
8

Gut microbiota regulates bile acid metabolism by reducing the levels of tauro-beta-muricholic acid, a naturally occurring FXR antagonist.
Sama I Sayin, Annika Wahlström, Jenny Felin, Sirkku Jäntti, Hanns-Ulrich Marschall, Krister Bamberg, Bo Angelin, Tuulia Hyötyläinen, Matej Orešič, Fredrik Bäckhed. Cell Metab 2013
8

A purified membrane protein from Akkermansia muciniphila or the pasteurized bacterium improves metabolism in obese and diabetic mice.
Hubert Plovier, Amandine Everard, Céline Druart, Clara Depommier, Matthias Van Hul, Lucie Geurts, Julien Chilloux, Noora Ottman, Thibaut Duparc, Laeticia Lichtenstein,[...]. Nat Med 2017
661
8

Metagenomic biomarker discovery and explanation.
Nicola Segata, Jacques Izard, Levi Waldron, Dirk Gevers, Larisa Miropolsky, Wendy S Garrett, Curtis Huttenhower. Genome Biol 2011
8

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.
Morgan G I Langille, Jesse Zaneveld, J Gregory Caporaso, Daniel McDonald, Dan Knights, Joshua A Reyes, Jose C Clemente, Deron E Burkepile, Rebecca L Vega Thurber, Rob Knight,[...]. Nat Biotechnol 2013
8

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells.
Yukihiro Furusawa, Yuuki Obata, Shinji Fukuda, Takaho A Endo, Gaku Nakato, Daisuke Takahashi, Yumiko Nakanishi, Chikako Uetake, Keiko Kato, Tamotsu Kato,[...]. Nature 2013
8

Effect of metformin on metabolic improvement and gut microbiota.
Heetae Lee, GwangPyo Ko. Appl Environ Microbiol 2014
188
8

Metformin and the gastrointestinal tract.
Laura J McCreight, Clifford J Bailey, Ewan R Pearson. Diabetologia 2016
276
8

Gut bacteria selectively promoted by dietary fibers alleviate type 2 diabetes.
Liping Zhao, Feng Zhang, Xiaoying Ding, Guojun Wu, Yan Y Lam, Xuejiao Wang, Huaqing Fu, Xinhe Xue, Chunhua Lu, Jilin Ma,[...]. Science 2018
660
8


Analyses of gut microbiota and plasma bile acids enable stratification of patients for antidiabetic treatment.
Yanyun Gu, Xiaokai Wang, Junhua Li, Yifei Zhang, Huanzi Zhong, Ruixin Liu, Dongya Zhang, Qiang Feng, Xiaoyan Xie, Jie Hong,[...]. Nat Commun 2017
151
8

Microbial ecology: human gut microbes associated with obesity.
Ruth E Ley, Peter J Turnbaugh, Samuel Klein, Jeffrey I Gordon. Nature 2006
8

Association of metformin administration with gut microbiome dysbiosis in healthy volunteers.
Ilze Elbere, Ineta Kalnina, Ivars Silamikelis, Ilze Konrade, Linda Zaharenko, Kristine Sekace, Ilze Radovica-Spalvina, Davids Fridmanis, Dita Gudra, Valdis Pirags,[...]. PLoS One 2018
49
16

Role of gut microbiota in type 2 diabetes pathophysiology.
Manoj Gurung, Zhipeng Li, Hannah You, Richard Rodrigues, Donald B Jump, Andrey Morgun, Natalia Shulzhenko. EBioMedicine 2020
223
8

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.
Xochitl C Morgan, Timothy L Tickle, Harry Sokol, Dirk Gevers, Kathryn L Devaney, Doyle V Ward, Joshua A Reyes, Samir A Shah, Neal LeLeiko, Scott B Snapper,[...]. Genome Biol 2012
7

The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment.
Xuan Zhang, Dongya Zhang, Huijue Jia, Qiang Feng, Donghui Wang, Di Liang, Xiangni Wu, Junhua Li, Longqing Tang, Yin Li,[...]. Nat Med 2015
686
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.