A citation-based method for searching scientific literature

Melissa Gymrek, Thomas Willems, Audrey Guilmatre, Haoyang Zeng, Barak Markus, Stoyan Georgiev, Mark J Daly, Alkes L Price, Jonathan K Pritchard, Andrew J Sharp, Yaniv Erlich. Nat Genet 2016
Times Cited: 139







List of co-cited articles
708 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The landscape of human STR variation.
Thomas Willems, Melissa Gymrek, Gareth Highnam, David Mittelman, Yaniv Erlich. Genome Res 2014
109
30



Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans.
Javier Quilez, Audrey Guilmatre, Paras Garg, Gareth Highnam, Melissa Gymrek, Yaniv Erlich, Ricky S Joshi, David Mittelman, Andrew J Sharp. Nucleic Acids Res 2016
47
51


Genome-wide profiling of heritable and de novo STR variations.
Thomas Willems, Dina Zielinski, Jie Yuan, Assaf Gordon, Melissa Gymrek, Yaniv Erlich. Nat Methods 2017
70
27

lobSTR: A short tandem repeat profiler for personal genomes.
Melissa Gymrek, David Golan, Saharon Rosset, Yaniv Erlich. Genome Res 2012
168
17

Unstable tandem repeats in promoters confer transcriptional evolvability.
Marcelo D Vinces, Matthieu Legendre, Marina Caldara, Masaki Hagihara, Kevin J Verstrepen. Science 2009
209
17

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
17

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
17


Variable tandem repeats accelerate evolution of coding and regulatory sequences.
Rita Gemayel, Marcelo D Vinces, Matthieu Legendre, Kevin J Verstrepen. Annu Rev Genet 2010
319
16

Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements.
Sterling Sawaya, Andrew Bagshaw, Emmanuel Buschiazzo, Pankaj Kumar, Shantanu Chowdhury, Michael A Black, Neil Gemmell. PLoS One 2013
84
16

Microsatellites within genes: structure, function, and evolution.
You-Chun Li, Abraham B Korol, Tzion Fahima, Eviatar Nevo. Mol Biol Evol 2004
555
14

A direct characterization of human mutation based on microsatellites.
James X Sun, Agnar Helgason, Gisli Masson, Sigríður Sunna Ebenesersdóttir, Heng Li, Swapan Mallick, Sante Gnerre, Nick Patterson, Augustine Kong, David Reich,[...]. Nat Genet 2012
171
13

An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
936
13

Tandem repeat variation in human and great ape populations and its impact on gene expression divergence.
Tugce Bilgin Sonay, Tiago Carvalho, Mark D Robinson, Maja P Greminger, Michael Krützen, David Comas, Gareth Highnam, David Mittelman, Andrew Sharp, Tomàs Marques-Bonet,[...]. Genome Res 2015
36
36

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
13


The impact of short tandem repeat variation on gene expression.
Stephanie Feupe Fotsing, Jonathan Margoliash, Catherine Wang, Shubham Saini, Richard Yanicky, Sharona Shleizer-Burko, Alon Goren, Melissa Gymrek. Nat Genet 2019
27
48

Accurate human microsatellite genotypes from high-throughput resequencing data using informed error profiles.
Gareth Highnam, Christopher Franck, Andy Martin, Calvin Stephens, Ashwin Puthige, David Mittelman. Nucleic Acids Res 2013
83
14

The overdue promise of short tandem repeat variation for heritability.
Maximilian O Press, Keisha D Carlson, Christine Queitsch. Trends Genet 2014
50
24

Molecular origins of rapid and continuous morphological evolution.
John W Fondon, Harold R Garner. Proc Natl Acad Sci U S A 2004
366
12

Interpreting short tandem repeat variations in humans using mutational constraint.
Melissa Gymrek, Thomas Willems, David Reich, Yaniv Erlich. Nat Genet 2017
25
48


Detection of long repeat expansions from PCR-free whole-genome sequence data.
Egor Dolzhenko, Joke J F A van Vugt, Richard J Shaw, Mitchell A Bekritsky, Marka van Blitterswijk, Giuseppe Narzisi, Subramanian S Ajay, Vani Rajan, Bryan R Lajoie, Nathan H Johnson,[...]. Genome Res 2017
113
11


Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
10

Sequence-based estimation of minisatellite and microsatellite repeat variability.
Matthieu Legendre, Nathalie Pochet, Theodore Pak, Kevin J Verstrepen. Genome Res 2007
134
10



Repeat instability: mechanisms of dynamic mutations.
Christopher E Pearson, Kerrie Nichol Edamura, John D Cleary. Nat Rev Genet 2005
606
9

Transcriptome and genome sequencing uncovers functional variation in humans.
Tuuli Lappalainen, Michael Sammeth, Marc R Friedländer, Peter A C 't Hoen, Jean Monlong, Manuel A Rivas, Mar Gonzàlez-Porta, Natalja Kurbatova, Thasso Griebel, Pedro G Ferreira,[...]. Nature 2013
9

A polymorphic microsatellite that mediates induction of PIG3 by p53.
Ana Contente, Alexandra Dittmer, Manuela C Koch, Judith Roth, Matthias Dobbelstein. Nat Genet 2002
182
9

Profiling of Short-Tandem-Repeat Disease Alleles in 12,632 Human Whole Genomes.
Haibao Tang, Ewen F Kirkness, Christoph Lippert, William H Biggs, Martin Fabani, Ernesto Guzman, Smriti Ramakrishnan, Victor Lavrenko, Boyko Kakaradov, Claire Hou,[...]. Am J Hum Genet 2017
52
17


PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
8

Intragenic tandem repeats generate functional variability.
Kevin J Verstrepen, An Jansen, Fran Lewitter, Gerald R Fink. Nat Genet 2005
379
8

Repeat expansion disease: progress and puzzles in disease pathogenesis.
Albert R La Spada, J Paul Taylor. Nat Rev Genet 2010
285
8

Genetic effects on gene expression across human tissues.
Alexis Battle, Christopher D Brown, Barbara E Engelhardt, Stephen B Montgomery. Nature 2017
8

The impact of structural variation on human gene expression.
Colby Chiang, Alexandra J Scott, Joe R Davis, Emily K Tsang, Xin Li, Yungil Kim, Tarik Hadzic, Farhan N Damani, Liron Ganel, Stephen B Montgomery,[...]. Nat Genet 2017
112
8


Simple sequence repeats as advantageous mutators in evolution.
Yechezkel Kashi, David G King. Trends Genet 2006
296
8

Targeted genotyping of variable number tandem repeats with adVNTR.
Mehrdad Bakhtiari, Sharona Shleizer-Burko, Melissa Gymrek, Vikas Bansal, Vineet Bafna. Genome Res 2018
15
53

VNTRseek-a computational tool to detect tandem repeat variants in high-throughput sequencing data.
Yevgeniy Gelfand, Yozen Hernandez, Joshua Loving, Gary Benson. Nucleic Acids Res 2014
16
43

Large-scale analysis of tandem repeat variability in the human genome.
Jorge Duitama, Alena Zablotskaya, Rita Gemayel, An Jansen, Stefanie Belet, Joris R Vermeesch, Kevin J Verstrepen, Guy Froyen. Nucleic Acids Res 2014
37
18

A variable dinucleotide repeat in the CFTR gene contributes to phenotype diversity by forming RNA secondary structures that alter splicing.
Timothy W Hefferon, Joshua D Groman, Catherine E Yurk, Garry R Cutting. Proc Natl Acad Sci U S A 2004
93
7

Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing.
Jingyi Hui, Lee-Hsueh Hung, Monika Heiner, Silke Schreiner, Norma Neumüller, Gregor Reither, Stefan A Haas, Albrecht Bindereif. EMBO J 2005
159
7

Population-Scale Sequencing Data Enable Precise Estimates of Y-STR Mutation Rates.
Thomas Willems, Melissa Gymrek, G David Poznik, Chris Tyler-Smith, Yaniv Erlich. Am J Hum Genet 2016
39
17

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Swapan Mallick, Heng Li, Mark Lipson, Iain Mathieson, Melissa Gymrek, Fernando Racimo, Mengyao Zhao, Niru Chennagiri, Susanne Nordenfelt, Arti Tandon,[...]. Nature 2016
464
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.