A citation-based method for searching scientific literature

Anne Lafon, Surayya Taranum, Federico Pietrocola, Florent Dingli, Damarys Loew, Sandipan Brahma, Blaine Bartholomew, Manolis Papamichos-Chronakis. Mol Cell 2015
Times Cited: 46







List of co-cited articles
705 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress.
Jérôme Poli, Christian-Benedikt Gerhold, Alessandro Tosi, Nicole Hustedt, Andrew Seeber, Ragna Sack, Franz Herzog, Philippe Pasero, Kenji Shimada, Karl-Peter Hopfner,[...]. Genes Dev 2016
68
47

Cdc48/p97 mediates UV-dependent turnover of RNA Pol II.
Rati Verma, Robert Oania, Ruihua Fang, Geoffrey T Smith, Raymond J Deshaies. Mol Cell 2011
145
26

Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity.
Manolis Papamichos-Chronakis, Shinya Watanabe, Oliver J Rando, Craig L Peterson. Cell 2011
268
26

SWR-C and INO80 chromatin remodelers recognize nucleosome-free regions near +1 nucleosomes.
Kuangyu Yen, Vinesh Vinayachandran, B Franklin Pugh. Cell 2013
125
23

The biology of chromatin remodeling complexes.
Cedric R Clapier, Bradley R Cairns. Annu Rev Biochem 2009
23

The Ino80 complex prevents invasion of euchromatin into silent chromatin.
Yong Xue, Christopher Van, Suman K Pradhan, Trent Su, Jason Gehrke, Benjamin G Kuryan, Tasuku Kitada, Ajay Vashisht, Nancy Tran, James Wohlschlegel,[...]. Genes Dev 2015
32
28


Ubiquitylation and degradation of elongating RNA polymerase II: the last resort.
Marcus D Wilson, Michelle Harreman, Jesper Q Svejstrup. Biochim Biophys Acta 2013
103
19

The INO80 remodeller in transcription, replication and repair.
Jérôme Poli, Susan M Gasser, Manolis Papamichos-Chronakis. Philos Trans R Soc Lond B Biol Sci 2017
46
19

Distinct ubiquitin ligases act sequentially for RNA polymerase II polyubiquitylation.
Michelle Harreman, Michael Taschner, Stefan Sigurdsson, Roy Anindya, James Reid, Baggavalli Somesh, Stephanie E Kong, Charles A S Banks, Ronald C Conaway, Joan W Conaway,[...]. Proc Natl Acad Sci U S A 2009
112
17

A Rad26-Def1 complex coordinates repair and RNA pol II proteolysis in response to DNA damage.
Elies C Woudstra, Chris Gilbert, Jane Fellows, Lars Jansen, Jaap Brouwer, Hediye Erdjument-Bromage, Paul Tempst, Jesper Q Svejstrup. Nature 2002
172
17

Ino80 chromatin remodeling complex promotes recovery of stalled replication forks.
Kenji Shimada, Yukako Oma, Thomas Schleker, Kazuto Kugou, Kunihiro Ohta, Masahiko Harata, Susan M Gasser. Curr Biol 2008
136
17


Subunit organization of the human INO80 chromatin remodeling complex: an evolutionarily conserved core complex catalyzes ATP-dependent nucleosome remodeling.
Lu Chen, Yong Cai, Jingji Jin, Laurence Florens, Selene K Swanson, Michael P Washburn, Joan Weliky Conaway, Ronald C Conaway. J Biol Chem 2011
76
17

Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes.
Amaya Alzu, Rodrigo Bermejo, Martina Begnis, Chiara Lucca, Daniele Piccini, Walter Carotenuto, Marco Saponaro, Alessandra Brambati, Andrea Cocito, Marco Foiani,[...]. Cell 2012
154
15

Structure and subunit topology of the INO80 chromatin remodeler and its nucleosome complex.
Alessandro Tosi, Caroline Haas, Franz Herzog, Andrea Gilmozzi, Otto Berninghausen, Charlotte Ungewickell, Christian B Gerhold, Kristina Lakomek, Ruedi Aebersold, Roland Beckmann,[...]. Cell 2013
164
15



The INO80 ATP-dependent chromatin remodeling complex is a nucleosome spacing factor.
Maheshi Udugama, Abdellah Sabri, Blaine Bartholomew. Mol Cell Biol 2011
85
15

Genomic Nucleosome Organization Reconstituted with Pure Proteins.
Nils Krietenstein, Megha Wal, Shinya Watanabe, Bongsoo Park, Craig L Peterson, B Franklin Pugh, Philipp Korber. Cell 2016
114
15

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
334
13

Multiple mechanisms confining RNA polymerase II ubiquitylation to polymerases undergoing transcriptional arrest.
Baggavalli P Somesh, James Reid, Wei-Feng Liu, T Max M Søgaard, Hediye Erdjument-Bromage, Paul Tempst, Jesper Q Svejstrup. Cell 2005
174
13



The Ino80 chromatin-remodeling enzyme regulates replisome function and stability.
Manolis Papamichos-Chronakis, Craig L Peterson. Nat Struct Mol Biol 2008
122
13


Mutations in UVSSA cause UV-sensitive syndrome and impair RNA polymerase IIo processing in transcription-coupled nucleotide-excision repair.
Yuka Nakazawa, Kensaku Sasaki, Norisato Mitsutake, Michiko Matsuse, Mayuko Shimada, Tiziana Nardo, Yoshito Takahashi, Kaname Ohyama, Kosei Ito, Hiroyuki Mishima,[...]. Nat Genet 2012
114
13

Genome-wide nucleosome specificity and directionality of chromatin remodelers.
Kuangyu Yen, Vinesh Vinayachandran, Kiran Batta, R Thomas Koerber, B Franklin Pugh. Cell 2012
201
13

Involvement of actin-related proteins in ATP-dependent chromatin remodeling.
Xuetong Shen, Ryan Ranallo, Eugene Choi, Carl Wu. Mol Cell 2003
265
13


Chromatin remodelling beyond transcription: the INO80 and SWR1 complexes.
Ashby J Morrison, Xuetong Shen. Nat Rev Mol Cell Biol 2009
200
13

Constitutive turnover of histone H2A.Z at yeast promoters requires the preinitiation complex.
Michael Tramantano, Lu Sun, Christy Au, Daniel Labuz, Zhimin Liu, Mindy Chou, Chen Shen, Ed Luk. Elife 2016
46
13

Removal of H2A.Z by INO80 promotes homologous recombination.
Hanan E Alatwi, Jessica A Downs. EMBO Rep 2015
76
13

The INO80 chromatin remodeling complex in transcription, replication and repair.
Ronald C Conaway, Joan Weliky Conaway. Trends Biochem Sci 2009
131
13

INO80 facilitates pluripotency gene activation in embryonic stem cell self-renewal, reprogramming, and blastocyst development.
Li Wang, Ying Du, James M Ward, Takashi Shimbo, Brad Lackford, Xiaofeng Zheng, Yi-liang Miao, Bingying Zhou, Leng Han, David C Fargo,[...]. Cell Stem Cell 2014
98
13

The mammalian INO80 chromatin remodeling complex is required for replication stress recovery.
Ivelina Vassileva, Iskra Yanakieva, Michaela Peycheva, Anastas Gospodinov, Boyka Anachkova. Nucleic Acids Res 2014
34
17


Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
236
13


The yeast and human FACT chromatin-reorganizing complexes solve R-loop-mediated transcription-replication conflicts.
Emilia Herrera-Moyano, Xénia Mergui, María L García-Rubio, Sonia Barroso, Andrés Aguilera. Genes Dev 2014
107
10


Chromatin retention of DNA damage sensors DDB2 and XPC through loss of p97 segregase causes genotoxicity.
Marjo-Riitta Puumalainen, Davor Lessel, Peter Rüthemann, Nina Kaczmarek, Karin Bachmann, Kristijan Ramadan, Hanspeter Naegeli. Nat Commun 2014
75
10

Control of p97 function by cofactor binding.
Alexander Buchberger, Hermann Schindelin, Petra Hänzelmann. FEBS Lett 2015
116
10

Role of the ubiquitin-selective CDC48(UFD1/NPL4 )chaperone (segregase) in ERAD of OLE1 and other substrates.
Sigurd Braun, Kai Matuschewski, Michael Rape, Sven Thoms, Stefan Jentsch. EMBO J 2002
271
10



Mutations in UVSSA cause UV-sensitive syndrome and destabilize ERCC6 in transcription-coupled DNA repair.
Xue Zhang, Katsuyoshi Horibata, Masafumi Saijo, Chie Ishigami, Akiko Ukai, Shin-ichiro Kanno, Hidetoshi Tahara, Edward G Neilan, Masamitsu Honma, Takehiko Nohmi,[...]. Nat Genet 2012
140
10

UV-sensitive syndrome protein UVSSA recruits USP7 to regulate transcription-coupled repair.
Petra Schwertman, Anna Lagarou, Dick H W Dekkers, Anja Raams, Adriana C van der Hoek, Charlie Laffeber, Jan H J Hoeijmakers, Jeroen A A Demmers, Maria Fousteri, Wim Vermeulen,[...]. Nat Genet 2012
152
10

UV-induced ubiquitination of RNA polymerase II: a novel modification deficient in Cockayne syndrome cells.
D B Bregman, R Halaban, A J van Gool, K A Henning, E C Friedberg, S L Warren. Proc Natl Acad Sci U S A 1996
249
10

Ring of Change: CDC48/p97 Drives Protein Dynamics at Chromatin.
André Franz, Leena Ackermann, Thorsten Hoppe. Front Genet 2016
59
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.