A citation-based method for searching scientific literature

Carter M Takacs, Antonio J Giraldez. Dev Biol 2016
Times Cited: 22







List of co-cited articles
166 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


MicroRNAs regulate brain morphogenesis in zebrafish.
Antonio J Giraldez, Ryan M Cinalli, Margaret E Glasner, Anton J Enright, J Michael Thomson, Scott Baskerville, Scott M Hammond, David P Bartel, Alexander F Schier. Science 2005
958
59

Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs.
Antonio J Giraldez, Yuichiro Mishima, Jason Rihel, Russell J Grocock, Stijn Van Dongen, Kunio Inoue, Anton J Enright, Alexander F Schier. Science 2006
45



Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
22

Stages of embryonic development of the zebrafish.
C B Kimmel, W W Ballard, S R Kimmel, B Ullmann, T F Schilling. Dev Dyn 1995
22

Target protectors reveal dampening and balancing of Nodal agonist and antagonist by miR-430.
Wen-Yee Choi, Antonio J Giraldez, Alexander F Schier. Science 2007
390
22


Differential regulation of germline mRNAs in soma and germ cells by zebrafish miR-430.
Yuichiro Mishima, Antonio J Giraldez, Yasuaki Takeda, Toshinobu Fujiwara, Hiroshi Sakamoto, Alexander F Schier, Kunio Inoue. Curr Biol 2006
237
22

miRBase: annotating high confidence microRNAs using deep sequencing data.
Ana Kozomara, Sam Griffiths-Jones. Nucleic Acids Res 2014
18

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
18

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Andrea Pauli, Eivind Valen, Michael F Lin, Manuel Garber, Nadine L Vastenhouw, Joshua Z Levin, Lin Fan, Albin Sandelin, John L Rinn, Aviv Regev,[...]. Genome Res 2012
558
18

Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition.
Håvard Aanes, Cecilia L Winata, Chi Ho Lin, Jieqi P Chen, Kandhadayar G Srinivasan, Serene G P Lee, Adrian Y M Lim, Hajira Shreen Hajan, Philippe Collas, Guillaume Bourque,[...]. Genome Res 2011
204
18

Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition.
Miler T Lee, Ashley R Bonneau, Carter M Takacs, Ariel A Bazzini, Kate R DiVito, Elizabeth S Fleming, Antonio J Giraldez. Nature 2013
266
18

The maternal-to-zygotic transition: a play in two acts.
Wael Tadros, Howard D Lipshitz. Development 2009
699
18

Extensive alternative polyadenylation during zebrafish development.
Igor Ulitsky, Alena Shkumatava, Calvin H Jan, Alexander O Subtelny, David Koppstein, George W Bell, Hazel Sive, David P Bartel. Genome Res 2012
216
18

Deadenylation of maternal mRNAs mediated by miR-427 in Xenopus laevis embryos.
Elsebet Lund, Mingzhu Liu, Rebecca S Hartley, Michael D Sheets, James E Dahlberg. RNA 2009
106
18

The earliest transcribed zygotic genes are short, newly evolved, and different across species.
Patricia Heyn, Martin Kircher, Andreas Dahl, Janet Kelso, Pavel Tomancak, Alex T Kalinka, Karla M Neugebauer. Cell Rep 2014
113
18


Processing of primary microRNAs by the Microprocessor complex.
Ahmet M Denli, Bastiaan B J Tops, Ronald H A Plasterk, René F Ketting, Gregory J Hannon. Nature 2004
18

MicroRNA expression in zebrafish embryonic development.
Erno Wienholds, Wigard P Kloosterman, Eric Miska, Ezequiel Alvarez-Saavedra, Eugene Berezikov, Ewart de Bruijn, H Robert Horvitz, Sakari Kauppinen, Ronald H A Plasterk. Science 2005
18

Temporal reciprocity of miRNAs and their targets during the maternal-to-zygotic transition in Drosophila.
Natascha Bushati, Alexander Stark, Julius Brennecke, Stephen M Cohen. Curr Biol 2008
186
18

miR-34/449 miRNAs are required for motile ciliogenesis by repressing cp110.
Rui Song, Peter Walentek, Nicole Sponer, Alexander Klimke, Joon Sub Lee, Gary Dixon, Richard Harland, Ying Wan, Polina Lishko, Muriel Lize,[...]. Nature 2014
142
13


The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.
B J Reinhart, F J Slack, M Basson, A E Pasquinelli, J C Bettinger, A E Rougvie, H R Horvitz, G Ruvkun. Nature 2000
13

bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila.
Julius Brennecke, David R Hipfner, Alexander Stark, Robert B Russell, Stephen M Cohen. Cell 2003
13

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades.
Marc R Friedländer, Sebastian D Mackowiak, Na Li, Wei Chen, Nikolaus Rajewsky. Nucleic Acids Res 2012
13

Regulation of mRNA translation and stability by microRNAs.
Marc Robert Fabian, Nahum Sonenberg, Witold Filipowicz. Annu Rev Biochem 2010
13

Analyzing real-time PCR data by the comparative C(T) method.
Thomas D Schmittgen, Kenneth J Livak. Nat Protoc 2008
13

SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase.
Wael Tadros, Aaron L Goldman, Tomas Babak, Fiona Menzies, Leah Vardy, Terry Orr-Weaver, Timothy R Hughes, J Timothy Westwood, Craig A Smibert, Howard D Lipshitz. Dev Cell 2007
220
13

Identification of the zebrafish maternal and paternal transcriptomes.
Steven A Harvey, Ian Sealy, Ross Kettleborough, Fruzsina Fenyes, Richard White, Derek Stemple, James C Smith. Development 2013
122
13


Zygotic genome activation during the maternal-to-zygotic transition.
Miler T Lee, Ashley R Bonneau, Antonio J Giraldez. Annu Rev Cell Dev Biol 2014
295
13


Poly(A)-tail profiling reveals an embryonic switch in translational control.
Alexander O Subtelny, Stephen W Eichhorn, Grace R Chen, Hazel Sive, David P Bartel. Nature 2014
373
13

The microRNA-producing enzyme Dicer1 is essential for zebrafish development.
Erno Wienholds, Marco J Koudijs, Freek J M van Eeden, Edwin Cuppen, Ronald H A Plasterk. Nat Genet 2003
347
13

DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal.
Yangming Wang, Rostislav Medvid, Collin Melton, Rudolf Jaenisch, Robert Blelloch. Nat Genet 2007
736
13

Many families of C. elegans microRNAs are not essential for development or viability.
Ezequiel Alvarez-Saavedra, H Robert Horvitz. Curr Biol 2010
211
13

A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA.
G Hutvágner, J McLachlan, A E Pasquinelli, E Bálint, T Tuschl, P D Zamore. Science 2001
13

MicroRNA-9 directs late organizer activity of the midbrain-hindbrain boundary.
Christoph Leucht, Christian Stigloher, Andrea Wizenmann, Ruth Klafke, Anja Folchert, Laure Bally-Cuif. Nat Neurosci 2008
236
13

Dicer is essential for mouse development.
Emily Bernstein, Sang Yong Kim, Michelle A Carmell, Elizabeth P Murchison, Heather Alcorn, Mamie Z Li, Alea A Mills, Stephen J Elledge, Kathryn V Anderson, Gregory J Hannon. Nat Genet 2003
13

The crucial role and regulations of miRNAs in zebrafish development.
Manojit Bhattacharya, Ashish Ranjan Sharma, Garima Sharma, Bidhan Chandra Patra, Ju-Suk Nam, Chiranjib Chakraborty, Sang-Soo Lee. Protoplasma 2017
19
15

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
13

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks.
Cole Trapnell, Adam Roberts, Loyal Goff, Geo Pertea, Daehwan Kim, David R Kelley, Harold Pimentel, Steven L Salzberg, John L Rinn, Lior Pachter. Nat Protoc 2012
13

MicroRNA in teleost fish.
Teshome Tilahun Bizuayehu, Igor Babiak. Genome Biol Evol 2014
108
13

The developmental miRNA profiles of zebrafish as determined by small RNA cloning.
Po Yu Chen, Heiko Manninga, Krasimir Slanchev, Minchen Chien, James J Russo, Jingyue Ju, Robert Sheridan, Bino John, Debora S Marks, Dimos Gaidatzis,[...]. Genes Dev 2005
244
13

Identification of tissue-specific microRNAs from mouse.
Mariana Lagos-Quintana, Reinhard Rauhut, Abdullah Yalcin, Jutta Meyer, Winfried Lendeckel, Thomas Tuschl. Curr Biol 2002
13

MicroRNA cluster miR-17-92 regulates neural stem cell expansion and transition to intermediate progenitors in the developing mouse neocortex.
Shan Bian, Janet Hong, Qingsong Li, Laura Schebelle, Andrew Pollock, Jennifer L Knauss, Vidur Garg, Tao Sun. Cell Rep 2013
118
9

The functions of animal microRNAs.
Victor Ambros. Nature 2004
9

miRNAs are essential for survival and differentiation of newborn neurons but not for expansion of neural progenitors during early neurogenesis in the mouse embryonic neocortex.
Davide De Pietri Tonelli, Jeremy N Pulvers, Christiane Haffner, Elizabeth P Murchison, Gregory J Hannon, Wieland B Huttner. Development 2008
261
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.