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Times Cited: 121
Times Cited: 121
Times Cited
Times Co-cited
Similarity
Mapping the stereotyped behaviour of freely moving fruit flies.
Gordon J Berman, Daniel M Choi, William Bialek, Joshua W Shaevitz. J R Soc Interface 2014
Gordon J Berman, Daniel M Choi, William Bialek, Joshua W Shaevitz. J R Soc Interface 2014
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DeepLabCut: markerless pose estimation of user-defined body parts with deep learning.
Alexander Mathis, Pranav Mamidanna, Kevin M Cury, Taiga Abe, Venkatesh N Murthy, Mackenzie Weygandt Mathis, Matthias Bethge. Nat. Neurosci. 2018
Alexander Mathis, Pranav Mamidanna, Kevin M Cury, Taiga Abe, Venkatesh N Murthy, Mackenzie Weygandt Mathis, Matthias Bethge. Nat. Neurosci. 2018
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JAABA: interactive machine learning for automatic annotation of animal behavior.
Mayank Kabra, Alice A Robie, Marta Rivera-Alba, Steven Branson, Kristin Branson. Nat. Methods 2013
Mayank Kabra, Alice A Robie, Marta Rivera-Alba, Steven Branson, Kristin Branson. Nat. Methods 2013
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Automated measurement of mouse social behaviors using depth sensing, video tracking, and machine learning.
Weizhe Hong, Ann Kennedy, Xavier P Burgos-Artizzu, Moriel Zelikowsky, Santiago G Navonne, Pietro Perona, David J Anderson. Proc. Natl. Acad. Sci. U.S.A. 2015
Weizhe Hong, Ann Kennedy, Xavier P Burgos-Artizzu, Moriel Zelikowsky, Santiago G Navonne, Pietro Perona, David J Anderson. Proc. Natl. Acad. Sci. U.S.A. 2015
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Fast animal pose estimation using deep neural networks.
Talmo D Pereira, Diego E Aldarondo, Lindsay Willmore, Mikhail Kislin, Samuel S-H Wang, Mala Murthy, Joshua W Shaevitz. Nat. Methods 2019
Talmo D Pereira, Diego E Aldarondo, Lindsay Willmore, Mikhail Kislin, Samuel S-H Wang, Mala Murthy, Joshua W Shaevitz. Nat. Methods 2019
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Neuroscience Needs Behavior: Correcting a Reductionist Bias.
John W Krakauer, Asif A Ghazanfar, Alex Gomez-Marin, Malcolm A MacIver, David Poeppel. Neuron 2017
John W Krakauer, Asif A Ghazanfar, Alex Gomez-Marin, Malcolm A MacIver, David Poeppel. Neuron 2017
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The Striatum Organizes 3D Behavior via Moment-to-Moment Action Selection.
Jeffrey E Markowitz, Winthrop F Gillis, Celia C Beron, Shay Q Neufeld, Keiramarie Robertson, Neha D Bhagat, Ralph E Peterson, Emalee Peterson, Minsuk Hyun, Scott W Linderman,[...]. Cell 2018
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Discovery of brainwide neural-behavioral maps via multiscale unsupervised structure learning.
Joshua T Vogelstein, Youngser Park, Tomoko Ohyama, Rex A Kerr, James W Truman, Carey E Priebe, Marta Zlatic. Science 2014
Joshua T Vogelstein, Youngser Park, Tomoko Ohyama, Rex A Kerr, James W Truman, Carey E Priebe, Marta Zlatic. Science 2014
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Dimensionality and dynamics in the behavior of C. elegans.
Greg J Stephens, Bethany Johnson-Kerner, William Bialek, William S Ryu. PLoS Comput. Biol. 2008
Greg J Stephens, Bethany Johnson-Kerner, William Bialek, William S Ryu. PLoS Comput. Biol. 2008
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Mapping the Neural Substrates of Behavior.
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A dictionary of behavioral motifs reveals clusters of genes affecting Caenorhabditis elegans locomotion.
André E X Brown, Eviatar I Yemini, Laura J Grundy, Tadas Jucikas, William R Schafer. Proc. Natl. Acad. Sci. U.S.A. 2013
André E X Brown, Eviatar I Yemini, Laura J Grundy, Tadas Jucikas, William R Schafer. Proc. Natl. Acad. Sci. U.S.A. 2013
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Predictability and hierarchy in Drosophila behavior.
Gordon J Berman, William Bialek, Joshua W Shaevitz. Proc. Natl. Acad. Sci. U.S.A. 2016
Gordon J Berman, William Bialek, Joshua W Shaevitz. Proc. Natl. Acad. Sci. U.S.A. 2016
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High-throughput ethomics in large groups of Drosophila.
Kristin Branson, Alice A Robie, John Bender, Pietro Perona, Michael H Dickinson. Nat. Methods 2009
Kristin Branson, Alice A Robie, John Bender, Pietro Perona, Michael H Dickinson. Nat. Methods 2009
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Big behavioral data: psychology, ethology and the foundations of neuroscience.
Alex Gomez-Marin, Joseph J Paton, Adam R Kampff, Rui M Costa, Zachary F Mainen. Nat. Neurosci. 2014
Alex Gomez-Marin, Joseph J Paton, Adam R Kampff, Rui M Costa, Zachary F Mainen. Nat. Neurosci. 2014
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A quantitative framework for whole-body coordination reveals specific deficits in freely walking ataxic mice.
Ana S Machado, Dana M Darmohray, João Fayad, Hugo G Marques, Megan R Carey. Elife 2015
Ana S Machado, Dana M Darmohray, João Fayad, Hugo G Marques, Megan R Carey. Elife 2015
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idTracker: tracking individuals in a group by automatic identification of unmarked animals.
Alfonso Pérez-Escudero, Julián Vicente-Page, Robert C Hinz, Sara Arganda, Gonzalo G de Polavieja. Nat. Methods 2014
Alfonso Pérez-Escudero, Julián Vicente-Page, Robert C Hinz, Sara Arganda, Gonzalo G de Polavieja. Nat. Methods 2014
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An unsupervised method for quantifying the behavior of paired animals.
Ugne Klibaite, Gordon J Berman, Jessica Cande, David L Stern, Joshua W Shaevitz. Phys Biol 2017
Ugne Klibaite, Gordon J Berman, Jessica Cande, David L Stern, Joshua W Shaevitz. Phys Biol 2017
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The Spatiotemporal Organization of the Striatum Encodes Action Space.
Andreas Klaus, Gabriela J Martins, Vitor B Paixao, Pengcheng Zhou, Liam Paninski, Rui M Costa. Neuron 2017
Andreas Klaus, Gabriela J Martins, Vitor B Paixao, Pengcheng Zhou, Liam Paninski, Rui M Costa. Neuron 2017
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Computational Neuroethology: A Call to Action.
Sandeep Robert Datta, David J Anderson, Kristin Branson, Pietro Perona, Andrew Leifer. Neuron 2019
Sandeep Robert Datta, David J Anderson, Kristin Branson, Pietro Perona, Andrew Leifer. Neuron 2019
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Automated image-based tracking and its application in ecology.
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10
Systematic exploration of unsupervised methods for mapping behavior.
Jeremy G Todd, Jamey S Kain, Benjamin L de Bivort. Phys Biol 2017
Jeremy G Todd, Jamey S Kain, Benjamin L de Bivort. Phys Biol 2017
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DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning.
Jacob M Graving, Daniel Chae, Hemal Naik, Liang Li, Benjamin Koger, Blair R Costelloe, Iain D Couzin. Elife 2019
Jacob M Graving, Daniel Chae, Hemal Naik, Liang Li, Benjamin Koger, Blair R Costelloe, Iain D Couzin. Elife 2019
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Automated monitoring and analysis of social behavior in Drosophila.
Heiko Dankert, Liming Wang, Eric D Hoopfer, David J Anderson, Pietro Perona. Nat. Methods 2009
Heiko Dankert, Liming Wang, Eric D Hoopfer, David J Anderson, Pietro Perona. Nat. Methods 2009
8
Whole-brain calcium imaging with cellular resolution in freely behaving Caenorhabditis elegans.
Jeffrey P Nguyen, Frederick B Shipley, Ashley N Linder, George S Plummer, Mochi Liu, Sagar U Setru, Joshua W Shaevitz, Andrew M Leifer. Proc. Natl. Acad. Sci. U.S.A. 2016
Jeffrey P Nguyen, Frederick B Shipley, Ashley N Linder, George S Plummer, Mochi Liu, Sagar U Setru, Joshua W Shaevitz, Andrew M Leifer. Proc. Natl. Acad. Sci. U.S.A. 2016
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OptiMouse: a comprehensive open source program for reliable detection and analysis of mouse body and nose positions.
Yoram Ben-Shaul. BMC Biol. 2017
Yoram Ben-Shaul. BMC Biol. 2017
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Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
8
Context-dependent computation by recurrent dynamics in prefrontal cortex.
Valerio Mante, David Sussillo, Krishna V Shenoy, William T Newsome. Nature 2013
Valerio Mante, David Sussillo, Krishna V Shenoy, William T Newsome. Nature 2013
8
Global brain dynamics embed the motor command sequence of Caenorhabditis elegans.
Saul Kato, Harris S Kaplan, Tina Schrödel, Susanne Skora, Theodore H Lindsay, Eviatar Yemini, Shawn Lockery, Manuel Zimmer. Cell 2015
Saul Kato, Harris S Kaplan, Tina Schrödel, Susanne Skora, Theodore H Lindsay, Eviatar Yemini, Shawn Lockery, Manuel Zimmer. Cell 2015
8
Spontaneous behaviors drive multidimensional, brainwide activity.
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Charu Bai Reddy, Matteo Carandini, Kenneth D Harris. Science 2019
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Charu Bai Reddy, Matteo Carandini, Kenneth D Harris. Science 2019
8
Structure of the Zebrafish Locomotor Repertoire Revealed with Unsupervised Behavioral Clustering.
João C Marques, Simone Lackner, Rita Félix, Michael B Orger. Curr. Biol. 2018
João C Marques, Simone Lackner, Rita Félix, Michael B Orger. Curr. Biol. 2018
25
Using DeepLabCut for 3D markerless pose estimation across species and behaviors.
Tanmay Nath, Alexander Mathis, An Chi Chen, Amir Patel, Matthias Bethge, Mackenzie Weygandt Mathis. Nat Protoc 2019
Tanmay Nath, Alexander Mathis, An Chi Chen, Amir Patel, Matthias Bethge, Mackenzie Weygandt Mathis. Nat Protoc 2019
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A database of Caenorhabditis elegans behavioral phenotypes.
Eviatar Yemini, Tadas Jucikas, Laura J Grundy, André E X Brown, William R Schafer. Nat. Methods 2013
Eviatar Yemini, Tadas Jucikas, Laura J Grundy, André E X Brown, William R Schafer. Nat. Methods 2013
7
Independent optical excitation of distinct neural populations.
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7
Automated home-cage behavioural phenotyping of mice.
Hueihan Jhuang, Estibaliz Garrote, Jim Mutch, Xinlin Yu, Vinita Khilnani, Tomaso Poggio, Andrew D Steele, Thomas Serre. Nat Commun 2010
Hueihan Jhuang, Estibaliz Garrote, Jim Mutch, Xinlin Yu, Vinita Khilnani, Tomaso Poggio, Andrew D Steele, Thomas Serre. Nat Commun 2010
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Dynamic sensory cues shape song structure in Drosophila.
Philip Coen, Jan Clemens, Andrew J Weinstein, Diego A Pacheco, Yi Deng, Mala Murthy. Nature 2014
Philip Coen, Jan Clemens, Andrew J Weinstein, Diego A Pacheco, Yi Deng, Mala Murthy. Nature 2014
12
Machine vision methods for analyzing social interactions.
Alice A Robie, Kelly M Seagraves, S E Roian Egnor, Kristin Branson. J. Exp. Biol. 2017
Alice A Robie, Kelly M Seagraves, S E Roian Egnor, Kristin Branson. J. Exp. Biol. 2017
18
Automated long-term tracking and social behavioural phenotyping of animal colonies within a semi-natural environment.
Aharon Weissbrod, Alexander Shapiro, Genadiy Vasserman, Liat Edry, Molly Dayan, Assif Yitzhaky, Libi Hertzberg, Ofer Feinerman, Tali Kimchi. Nat Commun 2013
Aharon Weissbrod, Alexander Shapiro, Genadiy Vasserman, Liat Edry, Molly Dayan, Assif Yitzhaky, Libi Hertzberg, Ofer Feinerman, Tali Kimchi. Nat Commun 2013
10
Optogenetic dissection of descending behavioral control in Drosophila.
Jessica Cande, Shigehiro Namiki, Jirui Qiu, Wyatt Korff, Gwyneth M Card, Joshua W Shaevitz, David L Stern, Gordon J Berman. Elife 2018
Jessica Cande, Shigehiro Namiki, Jirui Qiu, Wyatt Korff, Gwyneth M Card, Joshua W Shaevitz, David L Stern, Gordon J Berman. Elife 2018
22
DeepFly3D, a deep learning-based approach for 3D limb and appendage tracking in tethered, adult Drosophila.
Semih Günel, Helge Rhodin, Daniel Morales, João Campagnolo, Pavan Ramdya, Pascal Fua. Elife 2019
Semih Günel, Helge Rhodin, Daniel Morales, João Campagnolo, Pavan Ramdya, Pascal Fua. Elife 2019
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Leg-tracking and automated behavioural classification in Drosophila.
Jamey Kain, Chris Stokes, Quentin Gaudry, Xiangzhi Song, James Foley, Rachel Wilson, Benjamin de Bivort. Nat Commun 2013
Jamey Kain, Chris Stokes, Quentin Gaudry, Xiangzhi Song, James Foley, Rachel Wilson, Benjamin de Bivort. Nat Commun 2013
15
Pan-neuronal imaging in roaming Caenorhabditis elegans.
Vivek Venkatachalam, Ni Ji, Xian Wang, Christopher Clark, James Kameron Mitchell, Mason Klein, Christopher J Tabone, Jeremy Florman, Hongfei Ji, Joel Greenwood,[...]. Proc. Natl. Acad. Sci. U.S.A. 2016
Vivek Venkatachalam, Ni Ji, Xian Wang, Christopher Clark, James Kameron Mitchell, Mason Klein, Christopher J Tabone, Jeremy Florman, Hongfei Ji, Joel Greenwood,[...]. Proc. Natl. Acad. Sci. U.S.A. 2016
8
Quantification of gait parameters in freely walking wild type and sensory deprived Drosophila melanogaster.
César S Mendes, Imre Bartos, Turgay Akay, Szabolcs Márka, Richard S Mann. Elife 2013
César S Mendes, Imre Bartos, Turgay Akay, Szabolcs Márka, Richard S Mann. Elife 2013
6
Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion.
Timothy W Dunn, Yu Mu, Sujatha Narayan, Owen Randlett, Eva A Naumann, Chao-Tsung Yang, Alexander F Schier, Jeremy Freeman, Florian Engert, Misha B Ahrens. Elife 2016
Timothy W Dunn, Yu Mu, Sujatha Narayan, Owen Randlett, Eva A Naumann, Chao-Tsung Yang, Alexander F Schier, Jeremy Freeman, Florian Engert, Misha B Ahrens. Elife 2016
7
Automated multi-day tracking of marked mice for the analysis of social behaviour.
Shay Ohayon, Ofer Avni, Adam L Taylor, Pietro Perona, S E Roian Egnor. J. Neurosci. Methods 2013
Shay Ohayon, Ofer Avni, Adam L Taylor, Pietro Perona, S E Roian Egnor. J. Neurosci. Methods 2013
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Neural population dynamics during reaching.
Mark M Churchland, John P Cunningham, Matthew T Kaufman, Justin D Foster, Paul Nuyujukian, Stephen I Ryu, Krishna V Shenoy. Nature 2012
Mark M Churchland, John P Cunningham, Matthew T Kaufman, Justin D Foster, Paul Nuyujukian, Stephen I Ryu, Krishna V Shenoy. Nature 2012
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Cortex commands the performance of skilled movement.
Jian-Zhong Guo, Austin R Graves, Wendy W Guo, Jihong Zheng, Allen Lee, Juan Rodríguez-González, Nuo Li, John J Macklin, James W Phillips, Brett D Mensh,[...]. Elife 2015
Jian-Zhong Guo, Austin R Graves, Wendy W Guo, Jihong Zheng, Allen Lee, Juan Rodríguez-González, Nuo Li, John J Macklin, James W Phillips, Brett D Mensh,[...]. Elife 2015
8
Imaging large-scale neural activity with cellular resolution in awake, mobile mice.
Daniel A Dombeck, Anton N Khabbaz, Forrest Collman, Thomas L Adelman, David W Tank. Neuron 2007
Daniel A Dombeck, Anton N Khabbaz, Forrest Collman, Thomas L Adelman, David W Tank. Neuron 2007
6
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