A citation-based method for searching scientific literature

Ye Zhang, Steven A Sloan, Laura E Clarke, Christine Caneda, Colton A Plaza, Paul D Blumenthal, Hannes Vogel, Gary K Steinberg, Michael S B Edwards, Gordon Li, John A Duncan, Samuel H Cheshier, Lawrence M Shuer, Edward F Chang, Gerald A Grant, Melanie G Hayden Gephart, Ben A Barres. Neuron 2016
Times Cited: 976







List of co-cited articles
737 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.
Ye Zhang, Kenian Chen, Steven A Sloan, Mariko L Bennett, Anja R Scholze, Sean O'Keeffe, Hemali P Phatnani, Paolo Guarnieri, Christine Caneda, Nadine Ruderisch,[...]. J Neurosci 2014
32

Neurotoxic reactive astrocytes are induced by activated microglia.
Shane A Liddelow, Kevin A Guttenplan, Laura E Clarke, Frederick C Bennett, Christopher J Bohlen, Lucas Schirmer, Mariko L Bennett, Alexandra E Münch, Won-Suk Chung, Todd C Peterson,[...]. Nature 2017
23

Reactive astrocyte nomenclature, definitions, and future directions.
Carole Escartin, Elena Galea, András Lakatos, James P O'Callaghan, Gabor C Petzold, Alberto Serrano-Pozo, Christian Steinhäuser, Andrea Volterra, Giorgio Carmignoto, Amit Agarwal,[...]. Nat Neurosci 2021
294
13

Genomic analysis of reactive astrogliosis.
Jennifer L Zamanian, Lijun Xu, Lynette C Foo, Navid Nouri, Lu Zhou, Rona G Giffard, Ben A Barres. J Neurosci 2012
11

Uniquely hominid features of adult human astrocytes.
Nancy Ann Oberheim, Takahiro Takano, Xiaoning Han, Wei He, Jane H C Lin, Fushun Wang, Qiwu Xu, Jeffrey D Wyatt, Webster Pilcher, Jeffrey G Ojemann,[...]. J Neurosci 2009
727
10

A Unique Microglia Type Associated with Restricting Development of Alzheimer's Disease.
Hadas Keren-Shaul, Amit Spinrad, Assaf Weiner, Orit Matcovitch-Natan, Raz Dvir-Szternfeld, Tyler K Ulland, Eyal David, Kuti Baruch, David Lara-Astaiso, Beata Toth,[...]. Cell 2017
10

Normal aging induces A1-like astrocyte reactivity.
Laura E Clarke, Shane A Liddelow, Chandrani Chakraborty, Alexandra E Münch, Myriam Heiman, Ben A Barres. Proc Natl Acad Sci U S A 2018
498
10

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
9

Single-cell transcriptomic analysis of Alzheimer's disease.
Hansruedi Mathys, Jose Davila-Velderrain, Zhuyu Peng, Fan Gao, Shahin Mohammadi, Jennie Z Young, Madhvi Menon, Liang He, Fatema Abdurrob, Xueqiao Jiang,[...]. Nature 2019
607
9

Astrocytes: biology and pathology.
Michael V Sofroniew, Harry V Vinters. Acta Neuropathol 2010
9

Diversity of astrocyte functions and phenotypes in neural circuits.
Baljit S Khakh, Michael V Sofroniew. Nat Neurosci 2015
550
8

A survey of human brain transcriptome diversity at the single cell level.
Spyros Darmanis, Steven A Sloan, Ye Zhang, Martin Enge, Christine Caneda, Lawrence M Shuer, Melanie G Hayden Gephart, Ben A Barres, Stephen R Quake. Proc Natl Acad Sci U S A 2015
619
8

Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain.
Blue B Lake, Song Chen, Brandon C Sos, Jean Fan, Gwendolyn E Kaeser, Yun C Yung, Thu E Duong, Derek Gao, Jerold Chun, Peter V Kharchenko,[...]. Nat Biotechnol 2018
348
8

Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.
Iris E Jansen, Jeanne E Savage, Kyoko Watanabe, Julien Bryois, Dylan M Williams, Stacy Steinberg, Julia Sealock, Ida K Karlsson, Sara Hägg, Lavinia Athanasiu,[...]. Nat Genet 2019
688
8

Development of a method for the purification and culture of rodent astrocytes.
Lynette C Foo, Nicola J Allen, Eric A Bushong, P Britten Ventura, Won-Suk Chung, Lu Zhou, John D Cahoy, Richard Daneman, Hui Zong, Mark H Ellisman,[...]. Neuron 2011
238
8

A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation.
Alexandra Grubman, Gabriel Chew, John F Ouyang, Guizhi Sun, Xin Yi Choo, Catriona McLean, Rebecca K Simmons, Sam Buckberry, Dulce B Vargas-Landin, Daniel Poppe,[...]. Nat Neurosci 2019
217
8

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
8

CD49f Is a Novel Marker of Functional and Reactive Human iPSC-Derived Astrocytes.
Lilianne Barbar, Tanya Jain, Matthew Zimmer, Ilya Kruglikov, Jessica S Sadick, Minghui Wang, Kriti Kalpana, Indigo V L Rose, Suzanne R Burstein, Tomasz Rusielewicz,[...]. Neuron 2020
43
18

Astrocytic complexity distinguishes the human brain.
Nancy Ann Oberheim, Xiaohai Wang, Steven Goldman, Maiken Nedergaard. Trends Neurosci 2006
421
7

Neural Circuit-Specialized Astrocytes: Transcriptomic, Proteomic, Morphological, and Functional Evidence.
Hua Chai, Blanca Diaz-Castro, Eiji Shigetomi, Emma Monte, J Christopher Octeau, Xinzhu Yu, Whitaker Cohn, Pradeep S Rajendran, Thomas M Vondriska, Julian P Whitelegge,[...]. Neuron 2017
311
7

Massively parallel single-nucleus RNA-seq with DroNc-seq.
Naomi Habib, Inbal Avraham-Davidi, Anindita Basu, Tyler Burks, Karthik Shekhar, Matan Hofree, Sourav R Choudhury, François Aguet, Ellen Gelfand, Kristin Ardlie,[...]. Nat Methods 2017
403
7

New tools for studying microglia in the mouse and human CNS.
Mariko L Bennett, F Chris Bennett, Shane A Liddelow, Bahareh Ajami, Jennifer L Zamanian, Nathaniel B Fernhoff, Sara B Mulinyawe, Christopher J Bohlen, Aykezar Adil, Andrew Tucker,[...]. Proc Natl Acad Sci U S A 2016
894
7

The Aging Astrocyte Transcriptome from Multiple Regions of the Mouse Brain.
Matthew M Boisvert, Galina A Erikson, Maxim N Shokhirev, Nicola J Allen. Cell Rep 2018
272
7


ATP mediates rapid microglial response to local brain injury in vivo.
Dimitrios Davalos, Jaime Grutzendler, Guang Yang, Jiyun V Kim, Yi Zuo, Steffen Jung, Dan R Littman, Michael L Dustin, Wen-Biao Gan. Nat Neurosci 2005
7

Resting microglial cells are highly dynamic surveillants of brain parenchyma in vivo.
Axel Nimmerjahn, Frank Kirchhoff, Fritjof Helmchen. Science 2005
7

Physiology of Astroglia.
Alexei Verkhratsky, Maiken Nedergaard. Physiol Rev 2018
532
6

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
Amit Zeisel, Ana B Muñoz-Manchado, Simone Codeluppi, Peter Lönnerberg, Gioele La Manno, Anna Juréus, Sueli Marques, Hermany Munguba, Liqun He, Christer Betsholtz,[...]. Science 2015
6

A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function.
John D Cahoy, Ben Emery, Amit Kaushal, Lynette C Foo, Jennifer L Zamanian, Karen S Christopherson, Yi Xing, Jane L Lubischer, Paul A Krieg, Sergey A Krupenko,[...]. J Neurosci 2008
6

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
6

Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing.
Brian W Kunkle, Benjamin Grenier-Boley, Rebecca Sims, Joshua C Bis, Vincent Damotte, Adam C Naj, Anne Boland, Maria Vronskaya, Sven J van der Lee, Alexandre Amlie-Wolf,[...]. Nat Genet 2019
838
6

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
6

Brain cell type-specific enhancer-promoter interactome maps and disease-risk association.
Alexi Nott, Inge R Holtman, Nicole G Coufal, Johannes C M Schlachetzki, Miao Yu, Rong Hu, Claudia Z Han, Monique Pena, Jiayang Xiao, Yin Wu,[...]. Science 2019
175
6

Transcriptomic analysis of purified human cortical microglia reveals age-associated changes.
Thais F Galatro, Inge R Holtman, Antonio M Lerario, Ilia D Vainchtein, Nieske Brouwer, Paula R Sola, Mariana M Veras, Tulio F Pereira, Renata E P Leite, Thomas Möller,[...]. Nat Neurosci 2017
328
6

An Efficient Platform for Astrocyte Differentiation from Human Induced Pluripotent Stem Cells.
Julia Tcw, Minghui Wang, Anna A Pimenova, Kathryn R Bowles, Brigham J Hartley, Emre Lacin, Saima I Machlovi, Rawan Abdelaal, Celeste M Karch, Hemali Phatnani,[...]. Stem Cell Reports 2017
138
6

The Cellular Phase of Alzheimer's Disease.
Bart De Strooper, Eric Karran. Cell 2016
778
6

Identification of a unique TGF-β-dependent molecular and functional signature in microglia.
Oleg Butovsky, Mark P Jedrychowski, Craig S Moore, Ron Cialic, Amanda J Lanser, Galina Gabriely, Thomas Koeglsperger, Ben Dake, Pauline M Wu, Camille E Doykan,[...]. Nat Neurosci 2014
6

Astrocytic neuroligins control astrocyte morphogenesis and synaptogenesis.
Jeff A Stogsdill, Juan Ramirez, Di Liu, Yong Ho Kim, Katherine T Baldwin, Eray Enustun, Tiffany Ejikeme, Ru-Rong Ji, Cagla Eroglu. Nature 2017
166
6

Identification of region-specific astrocyte subtypes at single cell resolution.
Mykhailo Y Batiuk, Araks Martirosyan, Jérôme Wahis, Filip de Vin, Catherine Marneffe, Carola Kusserow, Jordan Koeppen, João Filipe Viana, João Filipe Oliveira, Thierry Voet,[...]. Nat Commun 2020
171
6

Control of excitatory CNS synaptogenesis by astrocyte-secreted proteins Hevin and SPARC.
Hakan Kucukdereli, Nicola J Allen, Anthony T Lee, Ava Feng, M Ilcim Ozlu, Laura M Conatser, Chandrani Chakraborty, Gail Workman, Matthew Weaver, E Helene Sage,[...]. Proc Natl Acad Sci U S A 2011
333
5

Cell Biology of Astrocyte-Synapse Interactions.
Nicola J Allen, Cagla Eroglu. Neuron 2017
347
5

Knockout of glutamate transporters reveals a major role for astroglial transport in excitotoxicity and clearance of glutamate.
J D Rothstein, M Dykes-Hoberg, C A Pardo, L A Bristol, L Jin, R W Kuncl, Y Kanai, M A Hediger, Y Wang, J P Schielke,[...]. Neuron 1996
5

Tripartite synapses: astrocytes process and control synaptic information.
Gertrudis Perea, Marta Navarrete, Alfonso Araque. Trends Neurosci 2009
953
5

The Emerging Nature of Astrocyte Diversity.
Baljit S Khakh, Benjamin Deneen. Annu Rev Neurosci 2019
132
5

A molecular atlas of cell types and zonation in the brain vasculature.
Michael Vanlandewijck, Liqun He, Maarja Andaloussi Mäe, Johanna Andrae, Koji Ando, Francesca Del Gaudio, Khayrun Nahar, Thibaud Lebouvier, Bàrbara Laviña, Leonor Gouveia,[...]. Nature 2018
677
5

Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map.
Omer Ali Bayraktar, Theresa Bartels, Staffan Holmqvist, Vitalii Kleshchevnikov, Araks Martirosyan, Damon Polioudakis, Lucile Ben Haim, Adam M H Young, Mykhailo Y Batiuk, Kirti Prakash,[...]. Nat Neurosci 2020
131
5

Microglia in Alzheimer's disease.
David V Hansen, Jesse E Hanson, Morgan Sheng. J Cell Biol 2018
555
5

The TREM2-APOE Pathway Drives the Transcriptional Phenotype of Dysfunctional Microglia in Neurodegenerative Diseases.
Susanne Krasemann, Charlotte Madore, Ron Cialic, Caroline Baufeld, Narghes Calcagno, Rachid El Fatimy, Lien Beckers, Elaine O'Loughlin, Yang Xu, Zain Fanek,[...]. Immunity 2017
939
5

ApoE4 markedly exacerbates tau-mediated neurodegeneration in a mouse model of tauopathy.
Yang Shi, Kaoru Yamada, Shane Antony Liddelow, Scott T Smith, Lingzhi Zhao, Wenjie Luo, Richard M Tsai, Salvatore Spina, Lea T Grinberg, Julio C Rojas,[...]. Nature 2017
493
5

Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.
J C Lambert, C A Ibrahim-Verbaas, D Harold, A C Naj, R Sims, C Bellenguez, A L DeStafano, J C Bis, G W Beecham, B Grenier-Boley,[...]. Nat Genet 2013
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.