A citation-based method for searching scientific literature

Upasna Sharma, Colin C Conine, Jeremy M Shea, Ana Boskovic, Alan G Derr, Xin Y Bing, Clemence Belleannee, Alper Kucukural, Ryan W Serra, Fengyun Sun, Lina Song, Benjamin R Carone, Emiliano P Ricci, Xin Z Li, Lucas Fauquier, Melissa J Moore, Robert Sullivan, Craig C Mello, Manuel Garber, Oliver J Rando. Science 2016
Times Cited: 538







List of co-cited articles
1000 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder.
Qi Chen, Menghong Yan, Zhonghong Cao, Xin Li, Yunfang Zhang, Junchao Shi, Gui-hai Feng, Hongying Peng, Xudong Zhang, Ying Zhang,[...]. Science 2016
530
68

A transfer-RNA-derived small RNA regulates ribosome biogenesis.
Hak Kyun Kim, Gabriele Fuchs, Shengchun Wang, Wei Wei, Yue Zhang, Hyesuk Park, Biswajoy Roy-Chaudhuri, Pan Li, Jianpeng Xu, Kirk Chu,[...]. Nature 2017
150
27

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).
Yong Sun Lee, Yoshiyuki Shibata, Ankit Malhotra, Anindya Dutta. Genes Dev 2009
611
26

Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm.
Upasna Sharma, Fengyun Sun, Colin C Conine, Brian Reichholf, Shweta Kukreja, Veronika A Herzog, Stefan L Ameres, Oliver J Rando. Dev Cell 2018
120
25

Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice.
Katharina Gapp, Ali Jawaid, Peter Sarkies, Johannes Bohacek, Pawel Pelczar, Julien Prados, Laurent Farinelli, Eric Miska, Isabelle M Mansuy. Nat Neurosci 2014
576
25

Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement.
Hani Goodarzi, Xuhang Liu, Hoang C B Nguyen, Steven Zhang, Lisa Fish, Sohail F Tavazoie. Cell 2015
340
25

Dnmt2 mediates intergenerational transmission of paternally acquired metabolic disorders through sperm small non-coding RNAs.
Yunfang Zhang, Xudong Zhang, Junchao Shi, Francesca Tuorto, Xin Li, Yusheng Liu, Reinhard Liebers, Liwen Zhang, Yongcun Qu, Jingjing Qian,[...]. Nat Cell Biol 2018
133
24


Angiogenin cleaves tRNA and promotes stress-induced translational repression.
Satoshi Yamasaki, Pavel Ivanov, Guo-Fu Hu, Paul Anderson. J Cell Biol 2009
495
23

LTR-Retrotransposon Control by tRNA-Derived Small RNAs.
Andrea J Schorn, Michael J Gutbrod, Chantal LeBlanc, Rob Martienssen. Cell 2017
150
22

Angiogenin-induced tRNA fragments inhibit translation initiation.
Pavel Ivanov, Mohamed M Emara, Judit Villen, Steven P Gygi, Paul Anderson. Mol Cell 2011
519
22

tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma.
Roy L Maute, Christof Schneider, Pavel Sumazin, Antony Holmes, Andrea Califano, Katia Basso, Riccardo Dalla-Favera. Proc Natl Acad Sci U S A 2013
297
22

A novel class of tRNA-derived small RNAs extremely enriched in mature mouse sperm.
Hongying Peng, Junchao Shi, Ying Zhang, He Zhang, Shangying Liao, Wei Li, Li Lei, Chunsheng Han, Lina Ning, Yujing Cao,[...]. Cell Res 2012
170
21

tRNA cleavage is a conserved response to oxidative stress in eukaryotes.
Debrah M Thompson, Cheng Lu, Pamela J Green, Roy Parker. RNA 2008
354
19

Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers.
Shozo Honda, Phillipe Loher, Megumi Shigematsu, Juan P Palazzo, Ryusuke Suzuki, Issei Imoto, Isidore Rigoutsos, Yohei Kirino. Proc Natl Acad Sci U S A 2015
165
19

tRNA fragments (tRFs) guide Ago to regulate gene expression post-transcriptionally in a Dicer-independent manner.
Canan Kuscu, Pankaj Kumar, Manjari Kiran, Zhangli Su, Asrar Malik, Anindya Dutta. RNA 2018
116
19

Small RNAs Gained during Epididymal Transit of Sperm Are Essential for Embryonic Development in Mice.
Colin C Conine, Fengyun Sun, Lina Song, Jaime A Rivera-Pérez, Oliver J Rando. Dev Cell 2018
106
17

Biogenesis and Function of Transfer RNA-Related Fragments (tRFs).
Pankaj Kumar, Canan Kuscu, Anindya Dutta. Trends Biochem Sci 2016
179
17

Stress induces tRNA cleavage by angiogenin in mammalian cells.
Hanjiang Fu, Junjun Feng, Qin Liu, Fang Sun, Yi Tie, Jie Zhu, Ruiyun Xing, Zhixian Sun, Xiaofei Zheng. FEBS Lett 2009
309
17

Transgenerational epigenetic programming via sperm microRNA recapitulates effects of paternal stress.
Ali B Rodgers, Christopher P Morgan, N Adrian Leu, Tracy L Bale. Proc Natl Acad Sci U S A 2015
331
16

Maternal overnutrition programs hedonic and metabolic phenotypes across generations through sperm tsRNAs.
Gitalee Sarker, Wenfei Sun, David Rosenkranz, Pawel Pelczar, Lennart Opitz, Vissarion Efthymiou, Christian Wolfrum, Daria Peleg-Raibstein. Proc Natl Acad Sci U S A 2019
43
37

Human tRNA-derived small RNAs in the global regulation of RNA silencing.
Dirk Haussecker, Yong Huang, Ashley Lau, Poornima Parameswaran, Andrew Z Fire, Mark A Kay. RNA 2010
422
16


tRNA biology charges to the front.
Eric M Phizicky, Anita K Hopper. Genes Dev 2010
494
15

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs.
Christian Cole, Andrew Sobala, Cheng Lu, Shawn R Thatcher, Andrew Bowman, John W S Brown, Pamela J Green, Geoffrey J Barton, Gyorgy Hutvagner. RNA 2009
389
15

Characterisation of mouse epididymosomes reveals a complex profile of microRNAs and a potential mechanism for modification of the sperm epigenome.
Jackson N Reilly, Eileen A McLaughlin, Simone J Stanger, Amanda L Anderson, Kate Hutcheon, Kiralee Church, Bettina P Mihalas, Sonika Tyagi, Janet E Holt, Andrew L Eamens,[...]. Sci Rep 2016
93
15


Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly.
Mohamed M Emara, Pavel Ivanov, Tyler Hickman, Nemisha Dawra, Sarah Tisdale, Nancy Kedersha, Guo-Fu Hu, Paul Anderson. J Biol Chem 2010
295
14

Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells.
Nicola Guzzi, Maciej Cieśla, Phuong Cao Thi Ngoc, Stefan Lang, Sonali Arora, Marios Dimitriou, Kristyna Pimková, Mikael N E Sommarin, Roberto Munita, Michal Lubas,[...]. Cell 2018
128
14

In utero effects. In utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism.
Elizabeth J Radford, Mitsuteru Ito, Hui Shi, Jennifer A Corish, Kazuki Yamazawa, Elvira Isganaitis, Stefanie Seisenberger, Timothy A Hore, Wolf Reik, Serap Erkek,[...]. Science 2014
364
13

Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals.
Benjamin R Carone, Lucas Fauquier, Naomi Habib, Jeremy M Shea, Caroline E Hart, Ruowang Li, Christoph Bock, Chengjian Li, Hongcang Gu, Phillip D Zamore,[...]. Cell 2010
673
13

Alterations in sperm long RNA contribute to the epigenetic inheritance of the effects of postnatal trauma.
K Gapp, G van Steenwyk, P L Germain, W Matsushima, K L M Rudolph, F Manuella, M Roszkowski, G Vernaz, T Ghosh, P Pelczar,[...]. Mol Psychiatry 2020
45
28

Human sperm displays rapid responses to diet.
Daniel Nätt, Unn Kugelberg, Eduard Casas, Elizabeth Nedstrand, Stefan Zalavary, Pontus Henriksson, Carola Nijm, Julia Jäderquist, Johanna Sandborg, Eva Flinke,[...]. PLoS Biol 2019
38
34


RNA-mediated paternal heredity of diet-induced obesity and metabolic disorders.
Valérie Grandjean, Sandra Fourré, Diana Andrea Fernandes De Abreu, Marie-Alix Derieppe, Jean-Jacques Remy, Minoo Rassoulzadegan. Sci Rep 2015
171
12

Dynamic expression of tRNA-derived small RNAs define cellular states.
Srikar Krishna, Daniel Gr Yim, Vairavan Lakshmanan, Varsha Tirumalai, Judice Ly Koh, Jung Eun Park, Jit Kong Cheong, Joo Leng Low, Michelle Js Lim, Siu Kwan Sze,[...]. EMBO Rep 2019
38
31

Stressing out over tRNA cleavage.
Debrah M Thompson, Roy Parker. Cell 2009
260
12

Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders.
Sandra Blanco, Sabine Dietmann, Joana V Flores, Shobbir Hussain, Claudia Kutter, Peter Humphreys, Margus Lukk, Patrick Lombard, Lucas Treps, Martyna Popis,[...]. EMBO J 2014
271
12

RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage.
Matthias Schaefer, Tim Pollex, Katharina Hanna, Francesca Tuorto, Madeleine Meusburger, Mark Helm, Frank Lyko. Genes Dev 2010
389
12

G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments.
Pavel Ivanov, Elizabeth O'Day, Mohamed M Emara, Gerhard Wagner, Judy Lieberman, Paul Anderson. Proc Natl Acad Sci U S A 2014
168
12

tsRNA signatures in cancer.
Veronica Balatti, Giovanni Nigita, Dario Veneziano, Alessandra Drusco, Gary S Stein, Terri L Messier, Nicholas H Farina, Jane B Lian, Luisa Tomasello, Chang-Gong Liu,[...]. Proc Natl Acad Sci U S A 2017
94
12

tRNA-derived small RNAs target transposable element transcripts.
German Martinez, Sarah G Choudury, R Keith Slotkin. Nucleic Acids Res 2017
119
12

Identification and functional characterization of tRNA-derived RNA fragments (tRFs) in respiratory syncytial virus infection.
Qingrong Wang, Inhan Lee, Junping Ren, Subramanian Shankar Ajay, Yong Sun Lee, Xiaoyong Bao. Mol Ther 2013
165
12

Sperm RNA code programmes the metabolic health of offspring.
Yunfang Zhang, Junchao Shi, Minoo Rassoulzadegan, Francesca Tuorto, Qi Chen. Nat Rev Endocrinol 2019
54
20

The microRNA signature of mouse spermatozoa is substantially modified during epididymal maturation.
Brett Nixon, Simone J Stanger, Bettina P Mihalas, Jackson N Reilly, Amanda L Anderson, Sonika Tyagi, Janet E Holt, Eileen A McLaughlin. Biol Reprod 2015
94
11

tRFdb: a database for transfer RNA fragments.
Pankaj Kumar, Suresh B Mudunuri, Jordan Anaya, Anindya Dutta. Nucleic Acids Res 2015
115
11

A tRNA-derived fragment competes with mRNA for ribosome binding and regulates translation during stress.
Jennifer Gebetsberger, Leander Wyss, Anna M Mleczko, Julia Reuther, Norbert Polacek. RNA Biol 2017
88
12


tRNA-Derived Small RNA: A Novel Regulatory Small Non-Coding RNA.
Siqi Li, Zhengping Xu, Jinghao Sheng. Genes (Basel) 2018
100
11



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.