A citation-based method for searching scientific literature

Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang, Misha Ahrens, Randy Bruno, Thomas M Jessell, Darcy S Peterka, Rafael Yuste, Liam Paninski. Neuron 2016
Times Cited: 291







List of co-cited articles
802 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
55

NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.
Eftychios A Pnevmatikakis, Andrea Giovannucci. J Neurosci Methods 2017
137
37

Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data.
Pengcheng Zhou, Shanna L Resendez, Jose Rodriguez-Romaguera, Jessica C Jimenez, Shay Q Neufeld, Andrea Giovannucci, Johannes Friedrich, Eftychios A Pnevmatikakis, Garret D Stuber, Rene Hen,[...]. Elife 2018
122
32

CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
90
33

Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
428
17

Fast online deconvolution of calcium imaging data.
Johannes Friedrich, Pengcheng Zhou, Liam Paninski. PLoS Comput Biol 2017
86
19

Fast nonnegative deconvolution for spike train inference from population calcium imaging.
Joshua T Vogelstein, Adam M Packer, Timothy A Machado, Tanya Sippy, Baktash Babadi, Rafael Yuste, Liam Paninski. J Neurophysiol 2010
199
16

Automated analysis of cellular signals from large-scale calcium imaging data.
Eran A Mukamel, Axel Nimmerjahn, Mark J Schnitzer. Neuron 2009
319
16

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.
Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, Karel Svoboda. Elife 2016
201
15

Long-term dynamics of CA1 hippocampal place codes.
Yaniv Ziv, Laurie D Burns, Eric D Cocker, Elizabeth O Hamel, Kunal K Ghosh, Lacey J Kitch, Abbas El Gamal, Mark J Schnitzer. Nat Neurosci 2013
408
14

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
167
14

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
13

Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo.
Hod Dana, Tsai-Wen Chen, Amy Hu, Brenda C Shields, Caiying Guo, Loren L Looger, Douglas S Kim, Karel Svoboda. PLoS One 2014
202
12

Fully integrated silicon probes for high-density recording of neural activity.
James J Jun, Nicholas A Steinmetz, Joshua H Siegle, Daniel J Denman, Marius Bauza, Brian Barbarits, Albert K Lee, Costas A Anastassiou, Alexandru Andrei, Çağatay Aydın,[...]. Nature 2017
429
11

A shared neural ensemble links distinct contextual memories encoded close in time.
Denise J Cai, Daniel Aharoni, Tristan Shuman, Justin Shobe, Jeremy Biane, Weilin Song, Brandon Wei, Michael Veshkini, Mimi La-Vu, Jerry Lou,[...]. Nature 2016
301
11

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
548
11

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
341
11

Tracking the Same Neurons across Multiple Days in Ca2+ Imaging Data.
Liron Sheintuch, Alon Rubin, Noa Brande-Eilat, Nitzan Geva, Noa Sadeh, Or Pinchasof, Yaniv Ziv. Cell Rep 2017
48
22

In vivo imaging of neural activity.
Weijian Yang, Rafael Yuste. Nat Methods 2017
144
10

Functional imaging of hippocampal place cells at cellular resolution during virtual navigation.
Daniel A Dombeck, Christopher D Harvey, Lin Tian, Loren L Looger, David W Tank. Nat Neurosci 2010
388
10

Two-photon laser scanning fluorescence microscopy.
W Denk, J H Strickler, W W Webb. Science 1990
10

Robustness of Spike Deconvolution for Neuronal Calcium Imaging.
Marius Pachitariu, Carsen Stringer, Kenneth D Harris. J Neurosci 2018
38
26

Benchmarking Spike Rate Inference in Population Calcium Imaging.
Lucas Theis, Philipp Berens, Emmanouil Froudarakis, Jacob Reimer, Miroslav Román Rosón, Tom Baden, Thomas Euler, Andreas S Tolias, Matthias Bethge. Neuron 2016
74
13

Spontaneous behaviors drive multidimensional, brainwide activity.
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Charu Bai Reddy, Matteo Carandini, Kenneth D Harris. Science 2019
190
10

Visualization of cortical, subcortical and deep brain neural circuit dynamics during naturalistic mammalian behavior with head-mounted microscopes and chronically implanted lenses.
Shanna L Resendez, Josh H Jennings, Randall L Ung, Vijay Mohan K Namboodiri, Zhe Charles Zhou, James M Otis, Hiroshi Nomura, Jenna A McHenry, Oksana Kosyk, Garret D Stuber. Nat Protoc 2016
109
10


Efficient subpixel image registration algorithms.
Manuel Guizar-Sicairos, Samuel T Thurman, James R Fienup. Opt Lett 2008
553
9

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.
Ahmed S Abdelfattah, Takashi Kawashima, Amrita Singh, Ondrej Novak, Hui Liu, Yichun Shuai, Yi-Chieh Huang, Luke Campagnola, Stephanie C Seeman, Jianing Yu,[...]. Science 2019
109
9

Imaging large-scale neural activity with cellular resolution in awake, mobile mice.
Daniel A Dombeck, Anton N Khabbaz, Forrest Collman, Thomas L Adelman, David W Tank. Neuron 2007
597
9

Deep tissue two-photon microscopy.
Fritjof Helmchen, Winfried Denk. Nat Methods 2005
9

Video-rate volumetric functional imaging of the brain at synaptic resolution.
Rongwen Lu, Wenzhi Sun, Yajie Liang, Aaron Kerlin, Jens Bierfeld, Johannes D Seelig, Daniel E Wilson, Benjamin Scholl, Boaz Mohar, Masashi Tanimoto,[...]. Nat Neurosci 2017
89
10

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo.
Thomas Deneux, Attila Kaszas, Gergely Szalay, Gergely Katona, Tamás Lakner, Amiram Grinvald, Balázs Rózsa, Ivo Vanzetta. Nat Commun 2016
61
14

Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain.
Jeffrey N Stirman, Ikuko T Smith, Michael W Kudenov, Spencer L Smith. Nat Biotechnol 2016
115
8

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality.
Tanya L Daigle, Linda Madisen, Travis A Hage, Matthew T Valley, Ulf Knoblich, Rylan S Larsen, Marc M Takeno, Lawrence Huang, Hong Gu, Rachael Larsen,[...]. Cell 2018
152
8

Choice-specific sequences in parietal cortex during a virtual-navigation decision task.
Christopher D Harvey, Philip Coen, David W Tank. Nature 2012
452
8

Single-trial neural dynamics are dominated by richly varied movements.
Simon Musall, Matthew T Kaufman, Ashley L Juavinett, Steven Gluf, Anne K Churchland. Nat Neurosci 2019
118
8

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.
Philipp Berens, Jeremy Freeman, Thomas Deneux, Nikolay Chenkov, Thomas McColgan, Artur Speiser, Jakob H Macke, Srinivas C Turaga, Patrick Mineault, Peter Rupprecht,[...]. PLoS Comput Biol 2018
31
25

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
8

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
451
7

moco: Fast Motion Correction for Calcium Imaging.
Alexander Dubbs, James Guevara, Rafael Yuste. Front Neuroinform 2016
62
11

Global Representations of Goal-Directed Behavior in Distinct Cell Types of Mouse Neocortex.
William E Allen, Isaac V Kauvar, Michael Z Chen, Ethan B Richman, Samuel J Yang, Ken Chan, Viviana Gradinaru, Benjamin E Deverman, Liqun Luo, Karl Deisseroth. Neuron 2017
118
7


Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex.
Aaron M Kerlin, Mark L Andermann, Vladimir K Berezovskii, R Clay Reid. Neuron 2010
338
7

Chronic cellular imaging of entire cortical columns in awake mice using microprisms.
Mark L Andermann, Nathan B Gilfoy, Glenn J Goldey, Robert N S Sachdev, Markus Wölfel, David A McCormick, R Clay Reid, Michael J Levene. Neuron 2013
102
7

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat Methods 2014
832
7

Simultaneous Multi-plane Imaging of Neural Circuits.
Weijian Yang, Jae-Eun Kang Miller, Luis Carrillo-Reid, Eftychios Pnevmatikakis, Liam Paninski, Rafael Yuste, Darcy S Peterka. Neuron 2016
101
7

Computational processing of neural recordings from calcium imaging data.
Carsen Stringer, Marius Pachitariu. Curr Opin Neurobiol 2019
16
37

From the neuron doctrine to neural networks.
Rafael Yuste. Nat Rev Neurosci 2015
210
6

Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines.
Nicholas A Steinmetz, Christina Buetfering, Jerome Lecoq, Christian R Lee, Andrew J Peters, Elina A K Jacobs, Philip Coen, Douglas R Ollerenshaw, Matthew T Valley, Saskia E J de Vries,[...]. eNeuro 2017
85
7

Removable cranial windows for long-term imaging in awake mice.
Glenn J Goldey, Demetris K Roumis, Lindsey L Glickfeld, Aaron M Kerlin, R Clay Reid, Vincent Bonin, Dorothy P Schafer, Mark L Andermann. Nat Protoc 2014
131
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.