A citation-based method for searching scientific literature

Shinji Sasaki, Toshio Watanabe, Shota Nishimura, Yoshikazu Sugimoto. BMC Genet 2016
Times Cited: 19







List of co-cited articles
176 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data.
Kai Wang, Mingyao Li, Dexter Hadley, Rui Liu, Joseph Glessner, Struan F A Grant, Hakon Hakonarson, Maja Bucan. Genome Res 2007
84

Global variation in copy number in the human genome.
Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, T Daniel Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen,[...]. Nature 2006
63

Genomic characteristics of cattle copy number variations.
Yali Hou, George E Liu, Derek M Bickhart, Maria Francesca Cardone, Kai Wang, Eui-Soo Kim, Lakshmi K Matukumalli, Mario Ventura, Jiuzhou Song, Paul M VanRaden,[...]. BMC Genomics 2011
141
57

Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins.
Lingyang Xu, John B Cole, Derek M Bickhart, Yali Hou, Jiuzhou Song, Paul M VanRaden, Tad S Sonstegard, Curtis P Van Tassell, George E Liu. BMC Genomics 2014
49
47

Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins.
Li Jiang, Jicai Jiang, Jie Yang, Xuan Liu, Jiying Wang, Haifei Wang, Xiangdong Ding, Jianfeng Liu, Qin Zhang. BMC Genomics 2013
58
47

Population-genetic properties of differentiated copy number variations in cattle.
Lingyang Xu, Yali Hou, Derek M Bickhart, Yang Zhou, El Hamidi Abdel Hay, Jiuzhou Song, Tad S Sonstegard, Curtis P Van Tassell, George E Liu. Sci Rep 2016
40
42

Identification of copy number variations and common deletion polymorphisms in cattle.
Joon Seol Bae, Hyun Sub Cheong, Lyoung Hyo Kim, Suk NamGung, Tae Joon Park, Ji-Yong Chun, Jason Yongha Kim, Charisse Flerida A Pasaje, Jin Sol Lee, Hyoung Doo Shin. BMC Genomics 2010
97
42

Analysis of copy number variations among diverse cattle breeds.
George E Liu, Yali Hou, Bin Zhu, Maria Francesca Cardone, Lu Jiang, Angelo Cellamare, Apratim Mitra, Leeson J Alexander, Luiz L Coutinho, Maria Elena Dell'Aquila,[...]. Genome Res 2010
183
42

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array.
Yali Hou, Derek M Bickhart, Miranda L Hvinden, Congjun Li, Jiuzhou Song, Didier A Boichard, Sébastien Fritz, André Eggen, Sue DeNise, George R Wiggans,[...]. BMC Genomics 2012
59
42

Identification of copy number variations in Qinchuan cattle using BovineHD Genotyping Beadchip array.
Quanwei Zhang, Youji Ma, Xueying Wang, Yong Zhang, Xingxu Zhao. Mol Genet Genomics 2015
18
38


Copy number variation in the bovine genome.
João Fadista, Bo Thomsen, Lars-Erik Holm, Christian Bendixen. BMC Genomics 2010
113
36

Genome-Wide Detection of CNVs and Their Association with Meat Tenderness in Nelore Cattle.
Vinicius Henrique da Silva, Luciana Correia de Almeida Regitano, Ludwig Geistlinger, Fábio Pértille, Poliana Fernanda Giachetto, Ricardo Augusto Brassaloti, Natália Silva Morosini, Ralf Zimmer, Luiz Lehmann Coutinho. PLoS One 2016
21
36

Copy number variation in human health, disease, and evolution.
Feng Zhang, Wenli Gu, Matthew E Hurles, James R Lupski. Annu Rev Genomics Hum Genet 2009
688
36

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery.
Paul Stothard, Jung-Woo Choi, Urmila Basu, Jennifer M Sumner-Thomson, Yan Meng, Xiaoping Liao, Stephen S Moore. BMC Genomics 2011
100
36

Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle.
Yali Hou, George E Liu, Derek M Bickhart, Lakshmi K Matukumalli, Congjun Li, Jiuzhou Song, Louis C Gasbarre, Curtis P Van Tassell, Tad S Sonstegard. Funct Integr Genomics 2012
66
31

Structural variation in the human genome.
Lars Feuk, Andrew R Carson, Stephen W Scherer. Nat Rev Genet 2006
31

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle.
Derek M Bickhart, Lingyang Xu, Jana L Hutchison, John B Cole, Daniel J Null, Steven G Schroeder, Jiuzhou Song, Jose Fernando Garcia, Tad S Sonstegard, Curtis P Van Tassell,[...]. DNA Res 2016
36
31

Copy number variation of individual cattle genomes using next-generation sequencing.
Derek M Bickhart, Yali Hou, Steven G Schroeder, Can Alkan, Maria Francesca Cardone, Lakshmi K Matukumalli, Jiuzhou Song, Robert D Schnabel, Mario Ventura, Jeremy F Taylor,[...]. Genome Res 2012
173
31

Genome structural variation discovery and genotyping.
Can Alkan, Bradley P Coe, Evan E Eichler. Nat Rev Genet 2011
729
31

Mapping copy number variation by population-scale genome sequencing.
Ryan E Mills, Klaudia Walter, Chip Stewart, Robert E Handsaker, Ken Chen, Can Alkan, Alexej Abyzov, Seungtai Chris Yoon, Kai Ye, R Keira Cheetham,[...]. Nature 2011
697
26

A genome-wide scan for copy number variations using high-density single nucleotide polymorphism array in Simmental cattle.
Yang Wu, Huizhong Fan, Shengyun Jing, Jiangwei Xia, Yan Chen, Lupei Zhang, Xue Gao, Junya Li, Huijiang Gao, Hongyan Ren. Anim Genet 2015
21
26

A comprehensive survey of copy number variation in 18 diverse pig populations and identification of candidate copy number variable genes associated with complex traits.
Congying Chen, Ruimin Qiao, Rongxing Wei, Yuanmei Guo, Huashui Ai, Junwu Ma, Jun Ren, Lusheng Huang. BMC Genomics 2012
63
26

Associated effects of copy number variants on economically important traits in Spanish Holstein dairy cattle.
Neila Ben Sassi, Óscar González-Recio, Raquel de Paz-Del Río, Silvia T Rodríguez-Ramilo, Ana I Fernández. J Dairy Sci 2016
17
29

Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds.
Mekki Boussaha, Diane Esquerré, Johanna Barbieri, Anis Djari, Alain Pinton, Rabia Letaief, Gérald Salin, Frédéric Escudié, Alain Roulet, Sébastien Fritz,[...]. PLoS One 2015
33
26

Genomic population structure and prevalence of copy number variations in South African Nguni cattle.
Magretha Diane Wang, Kennedy Dzama, Charles A Hefer, Farai C Muchadeyi. BMC Genomics 2015
15
33

Genome-wide identification of copy number variations in Chinese Holstein.
Li Jiang, Jicai Jiang, Jiying Wang, Xiangdong Ding, Jianfeng Liu, Qin Zhang. PLoS One 2012
38
26

Detection of copy number variations and their effects in Chinese bulls.
Liangzhi Zhang, Shangang Jia, Mingjuan Yang, Yao Xu, Congjun Li, Jiajie Sun, Yongzhen Huang, Xianyong Lan, Chuzhao Lei, Yang Zhou,[...]. BMC Genomics 2014
32
26



Analysis of copy number variants in the cattle genome.
James W Kijas, William Barendse, Wes Barris, Blair Harrison, Russell McCulloch, Sean McWilliam, Vicki Whan. Gene 2011
26
21

Fine Mapping of a QTL for Fertility on BTA7 and Its Association With a CNV in the Israeli Holsteins.
Giora Glick, Andrey Shirak, Eyal Seroussi, Yoel Zeron, Efraim Ezra, Joel I Weller, Micha Ron. G3 (Bethesda) 2011
14
28

Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants.
Dalila Pinto, Katayoon Darvishi, Xinghua Shi, Diana Rajan, Diane Rigler, Tom Fitzgerald, Anath C Lionel, Bhooma Thiruvahindrapuram, Jeffrey R Macdonald, Ryan Mills,[...]. Nat Biotechnol 2011
289
21

A 660-Kb deletion with antagonistic effects on fertility and milk production segregates at high frequency in Nordic Red cattle: additional evidence for the common occurrence of balancing selection in livestock.
Naveen Kumar Kadri, Goutam Sahana, Carole Charlier, Terhi Iso-Touru, Bernt Guldbrandtsen, Latifa Karim, Ulrik Sander Nielsen, Frank Panitz, Gert Pedersen Aamand, Nina Schulman,[...]. PLoS Genet 2014
75
21

Comparative analyses across cattle genders and breeds reveal the pitfalls caused by false positive and lineage-differential copy number variations.
Yang Zhou, Yuri T Utsunomiya, Lingyang Xu, El Hamidi Abdel Hay, Derek M Bickhart, Tad S Sonstegard, Curtis P Van Tassell, Jose Fernando Garcia, George E Liu. Sci Rep 2016
14
28

The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility.
Enrique Gonzalez, Hemant Kulkarni, Hector Bolivar, Andrea Mangano, Racquel Sanchez, Gabriel Catano, Robert J Nibbs, Barry I Freedman, Marlon P Quinones, Michael J Bamshad,[...]. Science 2005
835
21

Analysis of copy number variations in the sheep genome using 50K SNP BeadChip array.
Jiasen Liu, Li Zhang, Lingyang Xu, Hangxing Ren, Jian Lu, Xiaoning Zhang, Shifang Zhang, Xinlei Zhou, Caihong Wei, Fuping Zhao,[...]. BMC Genomics 2013
50
21

Impact of Parental Bos taurus and Bos indicus Origins on Copy Number Variation in Traditional Chinese Cattle Breeds.
Liangzhi Zhang, Shangang Jia, Martin Plath, Yongzhen Huang, Congjun Li, Chuzhao Lei, Xin Zhao, Hong Chen. Genome Biol Evol 2015
9
44

Serial translocation by means of circular intermediates underlies colour sidedness in cattle.
Keith Durkin, Wouter Coppieters, Cord Drögemüller, Naima Ahariz, Nadine Cambisano, Tom Druet, Corinne Fasquelle, Aynalem Haile, Petr Horin, Lusheng Huang,[...]. Nature 2012
76
21

Novel origins of copy number variation in the dog genome.
Jonas Berglund, Elisa M Nevalainen, Anna-Maja Molin, Michele Perloski, Catherine André, Michael C Zody, Ted Sharpe, Christophe Hitte, Kerstin Lindblad-Toh, Hannes Lohi,[...]. Genome Biol 2012
53
21

Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus.
Yang Zhou, Yuri T Utsunomiya, Lingyang Xu, El Hamidi Abdel Hay, Derek M Bickhart, Pamela Almeida Alexandre, Benjamin D Rosen, Steven G Schroeder, Roberto Carvalheiro, Haroldo Henrique de Rezende Neves,[...]. BMC Genomics 2016
32
21

Genome-wide association study for milk somatic cell score in holstein cattle using copy number variation as markers.
M Durán Aguilar, S I Román Ponce, F J Ruiz López, E González Padilla, C G Vásquez Peláez, A Bagnato, M G Strillacci. J Anim Breed Genet 2017
26
21

Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping.
Bujie Zhan, João Fadista, Bo Thomsen, Jakob Hedegaard, Frank Panitz, Christian Bendixen. BMC Genomics 2011
55
21

PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
21

Comparing CNV detection methods for SNP arrays.
Laura Winchester, Christopher Yau, Jiannis Ragoussis. Brief Funct Genomic Proteomic 2009
134
21

An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
927
21

A whole-genome assembly of the domestic cow, Bos taurus.
Aleksey V Zimin, Arthur L Delcher, Liliana Florea, David R Kelley, Michael C Schatz, Daniela Puiu, Finnian Hanrahan, Geo Pertea, Curtis P Van Tassell, Tad S Sonstegard,[...]. Genome Biol 2009
714
21

CNV discovery for milk composition traits in dairy cattle using whole genome resequencing.
Yahui Gao, Jianping Jiang, Shaohua Yang, Yali Hou, George E Liu, Shengli Zhang, Qin Zhang, Dongxiao Sun. BMC Genomics 2017
27
21

Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle.
Yang Zhou, Erin E Connor, George R Wiggans, Yongfang Lu, Robert J Tempelman, Steven G Schroeder, Hong Chen, George E Liu. BMC Genomics 2018
15
26

Copy number variations in Hanwoo and Yanbian cattle genomes using the massively parallel sequencing data.
Jung-Woo Choi, Won-Hyong Chung, Kyu-Sang Lim, Won-Jun Lim, Bong-Hwan Choi, Seung-Hwan Lee, Hyeong-Cheol Kim, Seung-Soo Lee, Eun-Seok Cho, Kyung-Tai Lee,[...]. Gene 2016
4
75


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.