A citation-based method for searching scientific literature

Marianthi Karali, Maria Persico, Margherita Mutarelli, Annamaria Carissimo, Mariateresa Pizzo, Veer Singh Marwah, Concetta Ambrosio, Michele Pinelli, Diego Carrella, Stefano Ferrari, Diego Ponzin, Vincenzo Nigro, Diego di Bernardo, Sandro Banfi. Nucleic Acids Res 2016
Times Cited: 75







List of co-cited articles
791 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


IsomiRs--the overlooked repertoire in the dynamic microRNAome.
Corine T Neilsen, Gregory J Goodall, Cameron P Bracken. Trends Genet 2012
298
26

miRBase: annotating high confidence microRNAs using deep sequencing data.
Ana Kozomara, Sam Griffiths-Jones. Nucleic Acids Res 2014
24

Identification and characterization of microRNAs expressed in the mouse eye.
Marianthi Karali, Ivana Peluso, Valeria Marigo, Sandro Banfi. Invest Ophthalmol Vis Sci 2007
150
22

MicroRNA (miRNA) transcriptome of mouse retina and identification of a sensory organ-specific miRNA cluster.
Shunbin Xu, P Dane Witmer, Stephen Lumayag, Beatrix Kovacs, David Valle. J Biol Chem 2007
356
21

A mammalian microRNA expression atlas based on small RNA library sequencing.
Pablo Landgraf, Mirabela Rusu, Robert Sheridan, Alain Sewer, Nicola Iovino, Alexei Aravin, Sébastien Pfeffer, Amanda Rice, Alice O Kamphorst, Markus Landthaler,[...]. Cell 2007
20

Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
20

Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs.
Jacek Krol, Volker Busskamp, Ilona Markiewicz, Michael B Stadler, Sebastian Ribi, Jens Richter, Jens Duebel, Silvia Bicker, Hans Jörg Fehling, Dirk Schübeler,[...]. Cell 2010
343
20

miRNAs 182 and 183 are necessary to maintain adult cone photoreceptor outer segments and visual function.
Volker Busskamp, Jacek Krol, Dasha Nelidova, Janine Daum, Tamas Szikra, Ben Tsuda, Josephine Jüttner, Karl Farrow, Brigitte Gross Scherf, Claudia Patricia Patino Alvarez,[...]. Neuron 2014
97
20

miRNeye: a microRNA expression atlas of the mouse eye.
Marianthi Karali, Ivana Peluso, Vincenzo A Gennarino, Marchesa Bilio, Roberta Verde, Giampiero Lago, Pascal Dollé, Sandro Banfi. BMC Genomics 2010
125
18

Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
18

5' isomiR variation is of functional and evolutionary importance.
Geok Chin Tan, Elcie Chan, Attila Molnar, Rupa Sarkar, Diana Alexieva, Ihsan Mad Isa, Sophie Robinson, Shuchen Zhang, Peter Ellis, Cordelia F Langford,[...]. Nucleic Acids Res 2014
140
17


miR-124a is required for hippocampal axogenesis and retinal cone survival through Lhx2 suppression.
Rikako Sanuki, Akishi Onishi, Chieko Koike, Rieko Muramatsu, Satoshi Watanabe, Yuki Muranishi, Shoichi Irie, Shinji Uneo, Toshiyuki Koyasu, Ryosuke Matsui,[...]. Nat Neurosci 2011
200
16

Dicer inactivation leads to progressive functional and structural degeneration of the mouse retina.
Devid Damiani, John J Alexander, Jason R O'Rourke, Mike McManus, Ashutosh P Jadhav, Constance L Cepko, William W Hauswirth, Brian D Harfe, Enrica Strettoi. J Neurosci 2008
169
14

A highly expressed miR-101 isomiR is a functional silencing small RNA.
Franc Llorens, Mónica Bañez-Coronel, Lorena Pantano, Jose Antonio del Río, Isidre Ferrer, Xavier Estivill, Eulàlia Martí. BMC Genomics 2013
70
15

MicroRNA signatures in vitreous humour and plasma of patients with exudative AMD.
Catherine Ménard, Flavio A Rezende, Khalil Miloudi, Ariel Wilson, Nicolas Tétreault, Pierre Hardy, John Paul SanGiovanni, Vincent De Guire, Przemyslaw Sapieha. Oncotarget 2016
55
20

Serum MicroRNAs as Potential Biomarkers of AMD.
Maciej Szemraj, Anna Bielecka-Kowalska, Katarzyna Oszajca, Marta Krajewska, Roman Goś, Piotr Jurowski, Michał Kowalski, Janusz Szemraj. Med Sci Monit 2015
49
22

Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration.
Stephen Lumayag, Caroline E Haldin, Nicola J Corbett, Karl J Wahlin, Colleen Cowan, Sanja Turturro, Peter E Larsen, Beatrix Kovacs, P Dane Witmer, David Valle,[...]. Proc Natl Acad Sci U S A 2013
135
14

Conserved microRNA pathway regulates developmental timing of retinal neurogenesis.
Anna La Torre, Sean Georgi, Thomas A Reh. Proc Natl Acad Sci U S A 2013
141
14

MicroRNA profile of the developing mouse retina.
Laszlo Hackler, Jun Wan, Anand Swaroop, Jiang Qian, Donald J Zack. Invest Ophthalmol Vis Sci 2010
77
13

MicroRNAs of the mammalian eye display distinct and overlapping tissue specificity.
David G Ryan, Michelle Oliveira-Fernandes, Robert M Lavker. Mol Vis 2006
233
13



MiR-204 is responsible for inherited retinal dystrophy associated with ocular coloboma.
Ivan Conte, Kristen D Hadfield, Sara Barbato, Sabrina Carrella, Mariateresa Pizzo, Rajeshwari S Bhat, Annamaria Carissimo, Marianthi Karali, Louise F Porter, Jill Urquhart,[...]. Proc Natl Acad Sci U S A 2015
62
16

A circulating microrna profile is associated with late-stage neovascular age-related macular degeneration.
Felix Grassmann, Peter G A Schoenberger, Caroline Brandl, Tina Schick, Daniele Hasler, Gunter Meister, Monika Fleckenstein, Moritz Lindner, Horst Helbig, Sascha Fauser,[...]. PLoS One 2014
48
20

Most mammalian mRNAs are conserved targets of microRNAs.
Robin C Friedman, Kyle Kai-How Farh, Christopher B Burge, David P Bartel. Genome Res 2009
13

MicroRNAs are essential for differentiation of the retinal pigmented epithelium and maturation of adjacent photoreceptors.
Reut Ohana, Benjamin Weiman-Kelman, Shaul Raviv, Ernst R Tamm, Metsada Pasmanik-Chor, Ariel Rinon, Dvir Netanely, Ron Shamir, Arie S Solomon, Ruth Ashery-Padan. Development 2015
39
25

DICER1 is essential for survival of postmitotic rod photoreceptor cells in mice.
Thomas R Sundermeier, Ning Zhang, Frans Vinberg, Debarshi Mustafi, Hideo Kohno, Marcin Golczak, Xiaodong Bai, Akiko Maeda, Vladimir J Kefalov, Krzysztof Palczewski. FASEB J 2014
39
25

A network comprising short and long noncoding RNAs and RNA helicase controls mouse retina architecture.
Jacek Krol, Ilona Krol, Claudia Patricia Patino Alvarez, Michele Fiscella, Andreas Hierlemann, Botond Roska, Witold Filipowicz. Nat Commun 2015
57
15

Common micro RNAs (miRNAs) target complement factor H (CFH) regulation in Alzheimer's disease (AD) and in age-related macular degeneration (AMD).
Walter J Lukiw, Bhattacharjee Surjyadipta, Prerna Dua, Peter N Alexandrov. Int J Biochem Mol Biol 2012
96
12

Evaluation of circulating miRNAs in wet age-related macular degeneration.
Sevda Ertekin, Ozlem Yıldırım, Erdem Dinç, Lokman Ayaz, Senay Balcı Fidancı, Lülüfer Tamer. Mol Vis 2014
57
15

MicroRNAs and their isomiRs function cooperatively to target common biological pathways.
Nicole Cloonan, Shivangi Wani, Qinying Xu, Jian Gu, Kristi Lea, Sheila Heater, Catalin Barbacioru, Anita L Steptoe, Hilary C Martin, Ehsan Nourbakhsh,[...]. Genome Biol 2011
229
12

The widespread regulation of microRNA biogenesis, function and decay.
Jacek Krol, Inga Loedige, Witold Filipowicz. Nat Rev Genet 2010
12


miR-183/96 plays a pivotal regulatory role in mouse photoreceptor maturation and maintenance.
Lue Xiang, Xue-Jiao Chen, Kun-Chao Wu, Chang-Jun Zhang, Gao-Hui Zhou, Ji-Neng Lv, Lan-Fang Sun, Fei-Fei Cheng, Xue-Bi Cai, Zi-Bing Jin. Proc Natl Acad Sci U S A 2017
43
20

Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa.
Carol J Loscher, Karsten Hokamp, Paul F Kenna, Alasdair C Ivens, Peter Humphries, Arpad Palfi, G Jane Farrar. Genome Biol 2007
107
10

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness.
A Maxwell Burroughs, Yoshinari Ando, Michiel J L de Hoon, Yasuhiro Tomaru, Takahiro Nishibu, Ryo Ukekawa, Taku Funakoshi, Tsutomu Kurokawa, Harukazu Suzuki, Yoshihide Hayashizaki,[...]. Genome Res 2010
254
10

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.
Takayuki Katoh, Yuriko Sakaguchi, Kenjyo Miyauchi, Takeo Suzuki, Shin-Ichi Kashiwabara, Tadashi Baba, Tsutomu Suzuki. Genes Dev 2009
315
10

An Eye on Age-Related Macular Degeneration: The Role of MicroRNAs in Disease Pathology.
Patricia Berber, Felix Grassmann, Christina Kiel, Bernhard H F Weber. Mol Diagn Ther 2017
44
18

Knowledge about the presence or absence of miRNA isoforms (isomiRs) can successfully discriminate amongst 32 TCGA cancer types.
Aristeidis G Telonis, Rogan Magee, Phillipe Loher, Inna Chervoneva, Eric Londin, Isidore Rigoutsos. Nucleic Acids Res 2017
94
10


MicroRNA-124 Dysregulation is Associated With Retinal Inflammation and Photoreceptor Death in the Degenerating Retina.
Joshua A Chu-Tan, Matt Rutar, Kartik Saxena, Riemke Aggio-Bruce, Rohan W Essex, Krisztina Valter, Haihan Jiao, Nilisha Fernando, Yvette Wooff, Michele C Madigan,[...]. Invest Ophthalmol Vis Sci 2018
24
33

Dynamic isomiR regulation in Drosophila development.
Selene L Fernandez-Valverde, Ryan J Taft, John S Mattick. RNA 2010
158
9

Natural antisense transcripts associated with genes involved in eye development.
Giovanna Alfano, Carmen Vitiello, Cristina Caccioppoli, Tiziana Caramico, Antonietta Carola, Michael J Szego, Roderick R McInnes, Alberto Auricchio, Sandro Banfi. Hum Mol Genet 2005
89
9


Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity.
Aristeidis G Telonis, Phillipe Loher, Yi Jing, Eric Londin, Isidore Rigoutsos. Nucleic Acids Res 2015
90
9

Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss.
Angeles Mencía, Silvia Modamio-Høybjør, Nick Redshaw, Matías Morín, Fernando Mayo-Merino, Leticia Olavarrieta, Luis A Aguirre, Ignacio del Castillo, Karen P Steel, Tamas Dalmay,[...]. Nat Genet 2009
367
9

miR-204 is required for lens and retinal development via Meis2 targeting.
Ivan Conte, Sabrina Carrella, Raffaella Avellino, Marianthi Karali, Raquel Marco-Ferreres, Paola Bovolenta, Sandro Banfi. Proc Natl Acad Sci U S A 2010
124
9

The nuclear RNase III Drosha initiates microRNA processing.
Yoontae Lee, Chiyoung Ahn, Jinju Han, Hyounjeong Choi, Jaekwang Kim, Jeongbin Yim, Junho Lee, Patrick Provost, Olof Rådmark, Sunyoung Kim,[...]. Nature 2003
9



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.