A citation-based method for searching scientific literature

Charles K Kaufman, Christian Mosimann, Zi Peng Fan, Song Yang, Andrew J Thomas, Julien Ablain, Justin L Tan, Rachel D Fogley, Ellen van Rooijen, Elliott J Hagedorn, Christie Ciarlo, Richard M White, Dominick A Matos, Ann-Christin Puller, Cristina Santoriello, Eric C Liao, Richard A Young, Leonard I Zon. Science 2016
Times Cited: 186







List of co-cited articles
864 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


BRAF mutations are sufficient to promote nevi formation and cooperate with p53 in the genesis of melanoma.
E Elizabeth Patton, Hans R Widlund, Jeffery L Kutok, Kamden R Kopani, James F Amatruda, Ryan D Murphey, Stephane Berghmans, Elizabeth A Mayhall, David Traver, Christopher D M Fletcher,[...]. Curr Biol 2005
429
26

DHODH modulates transcriptional elongation in the neural crest and melanoma.
Richard Mark White, Jennifer Cech, Sutheera Ratanasirintrawoot, Charles Y Lin, Peter B Rahl, Christopher J Burke, Erin Langdon, Matthew L Tomlinson, Jack Mosher, Charles Kaufman,[...]. Nature 2011
292
25

The histone methyltransferase SETDB1 is recurrently amplified in melanoma and accelerates its onset.
Craig J Ceol, Yariv Houvras, Judit Jane-Valbuena, Steve Bilodeau, David A Orlando, Valentine Battisti, Lauriane Fritsch, William M Lin, Travis J Hollmann, Fabrizio Ferré,[...]. Nature 2011
342
24


Transparent adult zebrafish as a tool for in vivo transplantation analysis.
Richard Mark White, Anna Sessa, Christopher Burke, Teresa Bowman, Jocelyn LeBlanc, Craig Ceol, Caitlin Bourque, Michael Dovey, Wolfram Goessling, Caroline Erter Burns,[...]. Cell Stem Cell 2008
701
16

Sox10 promotes the formation and maintenance of giant congenital naevi and melanoma.
Olga Shakhova, Daniel Zingg, Simon M Schaefer, Lisette Hari, Gianluca Civenni, Jacqueline Blunschi, Stéphanie Claudinot, Michal Okoniewski, Friedrich Beermann, Daniela Mihic-Probst,[...]. Nat Cell Biol 2012
157
14

Low MITF/AXL ratio predicts early resistance to multiple targeted drugs in melanoma.
Judith Müller, Oscar Krijgsman, Jennifer Tsoi, Lidia Robert, Willy Hugo, Chunying Song, Xiangju Kong, Patricia A Possik, Paulien D M Cornelissen-Steijger, Marnix H Geukes Foppen,[...]. Nat Commun 2014
315
13

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
12

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.
Itay Tirosh, Benjamin Izar, Sanjay M Prakadan, Marc H Wadsworth, Daniel Treacy, John J Trombetta, Asaf Rotem, Christopher Rodman, Christine Lian, George Murphy,[...]. Science 2016
12

Toward Minimal Residual Disease-Directed Therapy in Melanoma.
Florian Rambow, Aljosja Rogiers, Oskar Marin-Bejar, Sara Aibar, Julia Femel, Michael Dewaele, Panagiotis Karras, Daniel Brown, Young Hwan Chang, Maria Debiec-Rychter,[...]. Cell 2018
184
11

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state.
Annelien Verfaillie, Hana Imrichova, Zeynep Kalender Atak, Michael Dewaele, Florian Rambow, Gert Hulselmans, Valerie Christiaens, Dmitry Svetlichnyy, Flavie Luciani, Laura Van den Mooter,[...]. Nat Commun 2015
200
10

A landscape of driver mutations in melanoma.
Eran Hodis, Ian R Watson, Gregory V Kryukov, Stefan T Arold, Marcin Imielinski, Jean-Philippe Theurillat, Elizabeth Nickerson, Daniel Auclair, Liren Li, Chelsea Place,[...]. Cell 2012
10

Mutations of the BRAF gene in human cancer.
Helen Davies, Graham R Bignell, Charles Cox, Philip Stephens, Sarah Edkins, Sheila Clegg, Jon Teague, Hayley Woffendin, Mathew J Garnett, William Bottomley,[...]. Nature 2002
10

Stages of embryonic development of the zebrafish.
C B Kimmel, W W Ballard, S R Kimmel, B Ullmann, T F Schilling. Dev Dyn 1995
10

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
10

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
10

In vivo switching of human melanoma cells between proliferative and invasive states.
Keith S Hoek, Ossia M Eichhoff, Natalie C Schlegel, Udo Döbbeling, Nikita Kobert, Leo Schaerer, Silvio Hemmi, Reinhard Dummer. Cancer Res 2008
420
10

A Quantitative System for Studying Metastasis Using Transparent Zebrafish.
Silja Heilmann, Kajan Ratnakumar, Erin Langdon, Emily Kansler, Isabella Kim, Nathaniel R Campbell, Elizabeth Perry, Amy McMahon, Charles Kaufman, Ellen van Rooijen,[...]. Cancer Res 2015
64
15

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
10

Human tumor genomics and zebrafish modeling identify SPRED1 loss as a driver of mucosal melanoma.
Julien Ablain, Mengshu Xu, Harriet Rothschild, Richard C Jordan, Jeffrey K Mito, Brianne H Daniels, Caitlin F Bell, Nancy M Joseph, Hong Wu, Boris C Bastian,[...]. Science 2018
57
17

Mitf regulation of Dia1 controls melanoma proliferation and invasiveness.
Suzanne Carreira, Jane Goodall, Laurence Denat, Mercedes Rodriguez, Paolo Nuciforo, Keith S Hoek, Alessandro Testori, Lionel Larue, Colin R Goding. Genes Dev 2006
383
9

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
9

A temporarily distinct subpopulation of slow-cycling melanoma cells is required for continuous tumor growth.
Alexander Roesch, Mizuho Fukunaga-Kalabis, Elizabeth C Schmidt, Susan E Zabierowski, Patricia A Brafford, Adina Vultur, Devraj Basu, Phyllis Gimotty, Thomas Vogt, Meenhard Herlyn. Cell 2010
774
9

Microenvironment-derived factors driving metastatic plasticity in melanoma.
Isabella S Kim, Silja Heilmann, Emily R Kansler, Yan Zhang, Milena Zimmer, Kajan Ratnakumar, Robert L Bowman, Theresa Simon-Vermot, Myles Fennell, Ralph Garippa,[...]. Nat Commun 2017
76
11

Antagonistic cross-regulation between Sox9 and Sox10 controls an anti-tumorigenic program in melanoma.
Olga Shakhova, Phil Cheng, Pravin J Mishra, Daniel Zingg, Simon M Schaefer, Julien Debbache, Jessica Häusel, Claudia Matter, Theresa Guo, Sean Davis,[...]. PLoS Genet 2015
48
16

nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate.
J A Lister, C P Robertson, T Lepage, S L Johnson, D W Raible. Development 1999
521
8

A CRISPR/Cas9 vector system for tissue-specific gene disruption in zebrafish.
Julien Ablain, Ellen M Durand, Song Yang, Yi Zhou, Leonard I Zon. Dev Cell 2015
213
8

Yin Yang 1 Orchestrates a Metabolic Program Required for Both Neural Crest Development and Melanoma Formation.
Sandra Varum, Arianna Baggiolini, Luis Zurkirchen, Zeynep Kalender Atak, Claudio Cantù, Elisa Marzorati, Raphaël Bossart, Jasper Wouters, Jessica Häusel, Eylül Tuncer,[...]. Cell Stem Cell 2019
16
50

Ligand-activated BMP signaling inhibits cell differentiation and death to promote melanoma.
Arvind M Venkatesan, Rajesh Vyas, Alec K Gramann, Karen Dresser, Sharvari Gujja, Sanchita Bhatnagar, Sagar Chhangawala, Camilla Borges Ferreira Gomes, Hualin Simon Xi, Christine G Lian,[...]. J Clin Invest 2018
17
47

Multi-stage Differentiation Defines Melanoma Subtypes with Differential Vulnerability to Drug-Induced Iron-Dependent Oxidative Stress.
Jennifer Tsoi, Lidia Robert, Kim Paraiso, Carlos Galvan, Katherine M Sheu, Johnson Lay, Deborah J L Wong, Mohammad Atefi, Roksana Shirazi, Xiaoyan Wang,[...]. Cancer Cell 2018
196
8

Cancer stem cells versus phenotype-switching in melanoma.
Keith S Hoek, Colin R Goding. Pigment Cell Melanoma Res 2010
305
7

A conditional zebrafish MITF mutation reveals MITF levels are critical for melanoma promotion vs. regression in vivo.
James A Lister, Amy Capper, Zhiqiang Zeng, Marie E Mathers, Jennifer Richardson, Karthika Paranthaman, Ian J Jackson, E Elizabeth Patton. J Invest Dermatol 2014
54
12

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
7

Oncogenic NRAS cooperates with p53 loss to generate melanoma in zebrafish.
Michael Dovey, Richard Mark White, Leonard I Zon. Zebrafish 2009
90
7

Kita driven expression of oncogenic HRAS leads to early onset and highly penetrant melanoma in zebrafish.
Cristina Santoriello, Elisa Gennaro, Viviana Anelli, Martin Distel, Amanda Kelly, Reinhard W Köster, Adam Hurlstone, Marina Mione. PLoS One 2010
89
7

The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs.
Kristen M Kwan, Esther Fujimoto, Clemens Grabher, Benjamin D Mangum, Melissa E Hardy, Douglas S Campbell, John M Parant, H Joseph Yost, John P Kanki, Chi-Bin Chien. Dev Dyn 2007
7


Effects of RAS on the genesis of embryonal rhabdomyosarcoma.
David M Langenau, Matthew D Keefe, Narie Y Storer, Jeffrey R Guyon, Jeffery L Kutok, Xiuning Le, Wolfram Goessling, Donna S Neuberg, Louis M Kunkel, Leonard I Zon. Genes Dev 2007
237
7

Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance.
Sydney M Shaffer, Margaret C Dunagin, Stefan R Torborg, Eduardo A Torre, Benjamin Emert, Clemens Krepler, Marilda Beqiri, Katrin Sproesser, Patricia A Brafford, Min Xiao,[...]. Nature 2017
422
7

Metastatic potential of melanomas defined by specific gene expression profiles with no BRAF signature.
Keith S Hoek, Natalie C Schlegel, Patricia Brafford, Antje Sucker, Selma Ugurel, Rajiv Kumar, Barbara L Weber, Katherine L Nathanson, David J Phillips, Meenhard Herlyn,[...]. Pigment Cell Res 2006
345
7

Mouse Cutaneous Melanoma Induced by Mutant BRaf Arises from Expansion and Dedifferentiation of Mature Pigmented Melanocytes.
Corinna Köhler, David Nittner, Florian Rambow, Enrico Radaelli, Fabio Stanchi, Niels Vandamme, Arianna Baggiolini, Lukas Sommer, Geert Berx, Joost J van den Oord,[...]. Cell Stem Cell 2017
44
15

Visualizing Engrafted Human Cancer and Therapy Responses in Immunodeficient Zebrafish.
Chuan Yan, Dalton C Brunson, Qin Tang, Daniel Do, Nicolae A Iftimia, John C Moore, Madeline N Hayes, Alessandra M Welker, Elaine G Garcia, Taronish D Dubash,[...]. Cell 2019
81
8

SOX10 ablation arrests cell cycle, induces senescence, and suppresses melanomagenesis.
Julia C Cronin, Dawn E Watkins-Chow, Art Incao, Joanne H Hasskamp, Nicola Schönewolf, Lauren G Aoude, Nicholas K Hayward, Boris C Bastian, Reinhard Dummer, Stacie K Loftus,[...]. Cancer Res 2013
40
15

Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells.
Patrick Laurette, Thomas Strub, Dana Koludrovic, Céline Keime, Stéphanie Le Gras, Hannah Seberg, Eric Van Otterloo, Hana Imrichova, Robert Siddaway, Stein Aerts,[...]. Elife 2015
88
6

Super-enhancers in the control of cell identity and disease.
Denes Hnisz, Brian J Abraham, Tong Ihn Lee, Ashley Lau, Violaine Saint-André, Alla A Sigova, Heather A Hoke, Richard A Young. Cell 2013
6

New Functional Signatures for Understanding Melanoma Biology from Tumor Cell Lineage-Specific Analysis.
Florian Rambow, Bastien Job, Valérie Petit, Franck Gesbert, Véronique Delmas, Hannah Seberg, Guillaume Meurice, Eric Van Otterloo, Philippe Dessen, Caroline Robert,[...]. Cell Rep 2015
45
13

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
6

Myc-induced T cell leukemia in transgenic zebrafish.
David M Langenau, David Traver, Adolfo A Ferrando, Jeffery L Kutok, Jon C Aster, John P Kanki, Shuo Lin, Ed Prochownik, Nikolaus S Trede, Leonard I Zon,[...]. Science 2003
373
6

Macrophage-Dependent Cytoplasmic Transfer during Melanoma Invasion In Vivo.
Minna Roh-Johnson, Arish N Shah, Jason A Stonick, Kumud R Poudel, Julia Kargl, Grace H Yang, Julie di Martino, Rafael E Hernandez, Charles E Gast, Luai R Zarour,[...]. Dev Cell 2017
49
12

Reversible and adaptive resistance to BRAF(V600E) inhibition in melanoma.
Chong Sun, Liqin Wang, Sidong Huang, Guus J J E Heynen, Anirudh Prahallad, Caroline Robert, John Haanen, Christian Blank, Jelle Wesseling, Stefan M Willems,[...]. Nature 2014
495
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.