A citation-based method for searching scientific literature

Gregory A Sowd, Erik Serrao, Hao Wang, Weifeng Wang, Hind J Fadel, Eric M Poeschla, Alan N Engelman. Proc Natl Acad Sci U S A 2016
Times Cited: 125







List of co-cited articles
1386 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Flexible use of nuclear import pathways by HIV-1.
KyeongEun Lee, Zandrea Ambrose, Thomas D Martin, Ilker Oztop, Alok Mulky, John G Julias, Nick Vandegraaff, Joerg G Baumann, Rui Wang, Wendy Yuen,[...]. Cell Host Microbe 2010
302
52

HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency.
Torsten Schaller, Karen E Ocwieja, Jane Rasaiyaah, Amanda J Price, Troy L Brady, Shoshannah L Roth, Stéphane Hué, Adam J Fletcher, KyeongEun Lee, Vineet N KewalRamani,[...]. PLoS Pathog 2011
316
45

Capsid-CPSF6 Interaction Licenses Nuclear HIV-1 Trafficking to Sites of Viral DNA Integration.
Vasudevan Achuthan, Jill M Perreira, Gregory A Sowd, Maritza Puray-Chavez, William M McDougall, Adriana Paulucci-Holthauzen, Xiaolin Wu, Hind J Fadel, Eric M Poeschla, Asha S Multani,[...]. Cell Host Microbe 2018
78
55

Host cofactors and pharmacologic ligands share an essential interface in HIV-1 capsid that is lost upon disassembly.
Amanda J Price, David A Jacques, William A McEwan, Adam J Fletcher, Sebastian Essig, Jason W Chin, Upul D Halambage, Christopher Aiken, Leo C James. PLoS Pathog 2014
157
41


CPSF6 defines a conserved capsid interface that modulates HIV-1 replication.
Amanda J Price, Adam J Fletcher, Torsten Schaller, Tom Elliott, KyeongEun Lee, Vineet N KewalRamani, Jason W Chin, Greg J Towers, Leo C James. PLoS Pathog 2012
163
38

Structural basis of HIV-1 capsid recognition by PF74 and CPSF6.
Akash Bhattacharya, Steven L Alam, Thomas Fricke, Kaneil Zadrozny, Jaroslaw Sedzicki, Alexander B Taylor, Borries Demeler, Owen Pornillos, Barbie K Ganser-Pornillos, Felipe Diaz-Griffero,[...]. Proc Natl Acad Sci U S A 2014
140
37

Direct Visualization of HIV-1 Replication Intermediates Shows that Capsid and CPSF6 Modulate HIV-1 Intra-nuclear Invasion and Integration.
Christopher R Chin, Jill M Perreira, George Savidis, Jocelyn M Portmann, Aaron M Aker, Eric M Feeley, Miles C Smith, Abraham L Brass. Cell Rep 2015
92
40

Nuclear architecture dictates HIV-1 integration site selection.
Bruna Marini, Attila Kertesz-Farkas, Hashim Ali, Bojana Lucic, Kamil Lisek, Lara Manganaro, Sandor Pongor, Roberto Luzzati, Alessandra Recchia, Fulvio Mavilio,[...]. Nature 2015
188
35

HIV-1 integration in the human genome favors active genes and local hotspots.
Astrid R W Schröder, Paul Shinn, Huaming Chen, Charles Berry, Joseph R Ecker, Frederic Bushman. Cell 2002
34

HIV-1 capsid: the multifaceted key player in HIV-1 infection.
Edward M Campbell, Thomas J Hope. Nat Rev Microbiol 2015
215
33

HIV integration targeting: a pathway involving Transportin-3 and the nuclear pore protein RanBP2.
Karen E Ocwieja, Troy L Brady, Keshet Ronen, Alyssa Huegel, Shoshannah L Roth, Torsten Schaller, Leo C James, Greg J Towers, John A T Young, Sumit K Chanda,[...]. PLoS Pathog 2011
164
32

HIV-1 nuclear import in macrophages is regulated by CPSF6-capsid interactions at the nuclear pore complex.
David Alejandro Bejarano, Ke Peng, Vibor Laketa, Kathleen Börner, K Laurence Jost, Bojana Lucic, Bärbel Glass, Marina Lusic, Barbara Müller, Hans-Georg Kräusslich. Elife 2019
77
41

Differential effects of human immunodeficiency virus type 1 capsid and cellular factors nucleoporin 153 and LEDGF/p75 on the efficiency and specificity of viral DNA integration.
Yasuhiro Koh, Xiaolin Wu, Andrea L Ferris, Kenneth A Matreyek, Steven J Smith, KyeongEun Lee, Vineet N KewalRamani, Stephen H Hughes, Alan Engelman. J Virol 2013
85
36


HIV-1 evades innate immune recognition through specific cofactor recruitment.
Jane Rasaiyaah, Choon Ping Tan, Adam J Fletcher, Amanda J Price, Caroline Blondeau, Laura Hilditch, David A Jacques, David L Selwood, Leo C James, Mahdad Noursadeghi,[...]. Nature 2013
295
29

Nup153 and Nup98 bind the HIV-1 core and contribute to the early steps of HIV-1 replication.
Francesca Di Nunzio, Thomas Fricke, Annarita Miccio, Jose Carlos Valle-Casuso, Patricio Perez, Philippe Souque, Ermanno Rizzi, Marco Severgnini, Fulvio Mavilio, Pierre Charneau,[...]. Virology 2013
99
28

Quantitative microscopy of functional HIV post-entry complexes reveals association of replication with the viral capsid.
Ke Peng, Walter Muranyi, Bärbel Glass, Vibor Laketa, Stephen R Yant, Luong Tsai, Tomas Cihlar, Barbara Müller, Hans-Georg Kräusslich. Elife 2014
119
28

A role for LEDGF/p75 in targeting HIV DNA integration.
Angela Ciuffi, Manuel Llano, Eric Poeschla, Christian Hoffmann, Jeremy Leipzig, Paul Shinn, Joseph R Ecker, Frederic Bushman. Nat Med 2005
442
27

Dynamics and regulation of nuclear import and nuclear movements of HIV-1 complexes.
Ryan C Burdick, Krista A Delviks-Frankenberry, Jianbo Chen, Sanath K Janaka, Jaya Sastri, Wei-Shau Hu, Vinay K Pathak. PLoS Pathog 2017
61
40

The Cleavage and Polyadenylation Specificity Factor 6 (CPSF6) Subunit of the Capsid-recruited Pre-messenger RNA Cleavage Factor I (CFIm) Complex Mediates HIV-1 Integration into Genes.
Sheeba Rasheedi, Ming-Chieh Shun, Erik Serrao, Gregory A Sowd, Juan Qian, Caili Hao, Twishasri Dasgupta, Alan N Engelman, Jacek Skowronski. J Biol Chem 2016
34
70

Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication.
Brett M Forshey, Uta von Schwedler, Wesley I Sundquist, Christopher Aiken. J Virol 2002
384
24

Capsid-Dependent Host Factors in HIV-1 Infection.
Masahiro Yamashita, Alan N Engelman. Trends Microbiol 2017
61
39

LEDGF/p75 functions downstream from preintegration complex formation to effect gene-specific HIV-1 integration.
Ming-Chieh Shun, Nidhanapati K Raghavendra, Nick Vandegraaff, Janet E Daigle, Siobhan Hughes, Paul Kellam, Peter Cherepanov, Alan Engelman. Genes Dev 2007
330
23

Capsid-CPSF6 Interaction Is Dispensable for HIV-1 Replication in Primary Cells but Is Selected during Virus Passage In Vivo.
Akatsuki Saito, Matthew S Henning, Erik Serrao, Brittany N Dubose, Samantha Teng, Jing Huang, Xiangming Li, Namiko Saito, Saumendra Prasad Roy, Mohammad Adnan Siddiqui,[...]. J Virol 2016
38
60


Complementary assays reveal a relationship between HIV-1 uncoating and reverse transcription.
Amy E Hulme, Omar Perez, Thomas J Hope. Proc Natl Acad Sci U S A 2011
176
22

TNPO3 protects HIV-1 replication from CPSF6-mediated capsid stabilization in the host cell cytoplasm.
Alberto De Iaco, Federico Santoni, Anne Vannier, Michel Guipponi, Stylianos Antonarakis, Jeremy Luban. Retrovirology 2013
105
21

Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Gongpu Zhao, Juan R Perilla, Ernest L Yufenyuy, Xin Meng, Bo Chen, Jiying Ning, Jinwoo Ahn, Angela M Gronenborn, Klaus Schulten, Christopher Aiken,[...]. Nature 2013
443
21

Time-Resolved Imaging of Single HIV-1 Uncoating In Vitro and in Living Cells.
Ashwanth C Francis, Mariana Marin, Jiong Shi, Christopher Aiken, Gregory B Melikyan. PLoS Pathog 2016
70
30


Chromatin organization at the nuclear pore favours HIV replication.
Mickaël Lelek, Nicoletta Casartelli, Danilo Pellin, Ermanno Rizzi, Philippe Souque, Marco Severgnini, Clelia Di Serio, Thomas Fricke, Felipe Diaz-Griffero, Christophe Zimmer,[...]. Nat Commun 2015
83
24

HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications.
Gary P Wang, Angela Ciuffi, Jeremy Leipzig, Charles C Berry, Frederic D Bushman. Genome Res 2007
308
20

LEDGF/p75 interacts with mRNA splicing factors and targets HIV-1 integration to highly spliced genes.
Parmit Kumar Singh, Matthew R Plumb, Andrea L Ferris, James R Iben, Xiaolin Wu, Hind J Fadel, Brian T Luke, Caroline Esnault, Eric M Poeschla, Stephen H Hughes,[...]. Genes Dev 2015
53
37

Human nucleoporins promote HIV-1 docking at the nuclear pore, nuclear import and integration.
Francesca Di Nunzio, Anne Danckaert, Thomas Fricke, Patricio Perez, Juliette Fernandez, Emmanuelle Perret, Pascal Roux, Spencer Shorte, Pierre Charneau, Felipe Diaz-Griffero,[...]. PLoS One 2012
109
20

The ability of TNPO3-depleted cells to inhibit HIV-1 infection requires CPSF6.
Thomas Fricke, Jose Carlos Valle-Casuso, Tommy E White, Alberto Brandariz-Nuñez, William J Bosche, Natalia Reszka, Robert Gorelick, Felipe Diaz-Griffero. Retrovirology 2013
67
29

HIV-1 uses dynamic capsid pores to import nucleotides and fuel encapsidated DNA synthesis.
David A Jacques, William A McEwan, Laura Hilditch, Amanda J Price, Greg J Towers, Leo C James. Nature 2016
109
20

HIV latency. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells.
F Maldarelli, X Wu, L Su, F R Simonetti, W Shao, S Hill, J Spindler, A L Ferris, J W Mellors, M F Kearney,[...]. Science 2014
486
19

HIV-1 integrase forms stable tetramers and associates with LEDGF/p75 protein in human cells.
Peter Cherepanov, Goedele Maertens, Paul Proost, Bart Devreese, Jozef Van Beeumen, Yves Engelborghs, Erik De Clercq, Zeger Debyser. J Biol Chem 2003
506
19

HIV latency. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection.
Thor A Wagner, Sherry McLaughlin, Kavita Garg, Charles Y K Cheung, Brendan B Larsen, Sheila Styrchak, Hannah C Huang, Paul T Edlefsen, James I Mullins, Lisa M Frenkel. Science 2014
390
19

Small-molecule inhibition of human immunodeficiency virus type 1 infection by virus capsid destabilization.
Jiong Shi, Jing Zhou, Vaibhav B Shah, Christopher Aiken, Kevin Whitby. J Virol 2011
167
19

Assembly and analysis of conical models for the HIV-1 core.
B K Ganser, S Li, V Y Klishko, J T Finch, W I Sundquist. Science 1999
456
18

X-ray structures of the hexameric building block of the HIV capsid.
Owen Pornillos, Barbie K Ganser-Pornillos, Brian N Kelly, Yuanzi Hua, Frank G Whitby, C David Stout, Wesley I Sundquist, Christopher P Hill, Mark Yeager. Cell 2009
357
18



HIV-1 uncoats in the nucleus near sites of integration.
Ryan C Burdick, Chenglei Li, MohamedHusen Munshi, Jonathan M O Rawson, Kunio Nagashima, Wei-Shau Hu, Vinay K Pathak. Proc Natl Acad Sci U S A 2020
82
21

HIV-1 capsid-targeting domain of cleavage and polyadenylation specificity factor 6.
Kyeongeun Lee, Alok Mulky, Wendy Yuen, Thomas D Martin, Nicholas R Meyerson, Laura Choi, Hyun Yu, Sara L Sawyer, Vineet N Kewalramani. J Virol 2012
59
28

Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication.
Renate König, Yingyao Zhou, Daniel Elleder, Tracy L Diamond, Ghislain M C Bonamy, Jeffrey T Irelan, Chih-Yuan Chiang, Buu P Tu, Paul D De Jesus, Caroline E Lilley,[...]. Cell 2008
719
17

Structural basis for high-affinity binding of LEDGF PWWP to mononucleosomes.
Jocelyn O Eidahl, Brandon L Crowe, Justin A North, Christopher J McKee, Nikoloz Shkriabai, Lei Feng, Matthew Plumb, Robert L Graham, Robert J Gorelick, Sonja Hess,[...]. Nucleic Acids Res 2013
132
17

Identification of host proteins required for HIV infection through a functional genomic screen.
Abraham L Brass, Derek M Dykxhoorn, Yair Benita, Nan Yan, Alan Engelman, Ramnik J Xavier, Judy Lieberman, Stephen J Elledge. Science 2008
17


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.