Roberto Feuda, Ferdinand Marlétaz, Michael A Bentley, Peter W H Holland. Genome Biol Evol 2016
Times Cited: 35
Times Cited: 35
Times Cited
Times Co-cited
Similarity
Extraordinary diversity of visual opsin genes in dragonflies.
Ryo Futahashi, Ryouka Kawahara-Miki, Michiyo Kinoshita, Kazutoshi Yoshitake, Shunsuke Yajima, Kentaro Arikawa, Takema Fukatsu. Proc Natl Acad Sci U S A 2015
Ryo Futahashi, Ryouka Kawahara-Miki, Michiyo Kinoshita, Kazutoshi Yoshitake, Shunsuke Yajima, Kentaro Arikawa, Takema Fukatsu. Proc Natl Acad Sci U S A 2015
40
Shedding new light on opsin evolution.
Megan L Porter, Joseph R Blasic, Michael J Bok, Evan G Cameron, Thomas Pringle, Thomas W Cronin, Phyllis R Robinson. Proc Biol Sci 2012
Megan L Porter, Joseph R Blasic, Michael J Bok, Evan G Cameron, Thomas Pringle, Thomas W Cronin, Phyllis R Robinson. Proc Biol Sci 2012
34
Pteropsin: a vertebrate-like non-visual opsin expressed in the honey bee brain.
Rodrigo A Velarde, Colin D Sauer, Kimberly K O Walden, Susan E Fahrbach, Hugh M Robertson. Insect Biochem Mol Biol 2005
Rodrigo A Velarde, Colin D Sauer, Kimberly K O Walden, Susan E Fahrbach, Hugh M Robertson. Insect Biochem Mol Biol 2005
34
The Dynamic Evolutionary History of Pancrustacean Eyes and Opsins.
Miriam J Henze, Todd H Oakley. Integr Comp Biol 2015
Miriam J Henze, Todd H Oakley. Integr Comp Biol 2015
31
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
22
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
Kazutaka Katoh, Daron M Standley. Mol Biol Evol 2013
Kazutaka Katoh, Daron M Standley. Mol Biol Evol 2013
22
The ecoresponsive genome of Daphnia pulex.
John K Colbourne, Michael E Pfrender, Donald Gilbert, W Kelley Thomas, Abraham Tucker, Todd H Oakley, Shinichi Tokishita, Andrea Aerts, Georg J Arnold, Malay Kumar Basu,[...]. Science 2011
John K Colbourne, Michael E Pfrender, Donald Gilbert, W Kelley Thomas, Abraham Tucker, Todd H Oakley, Shinichi Tokishita, Andrea Aerts, Georg J Arnold, Malay Kumar Basu,[...]. Science 2011
20
20
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
Kazutaka Katoh, Kazuharu Misawa, Kei-ichi Kuma, Takashi Miyata. Nucleic Acids Res 2002
Kazutaka Katoh, Kazuharu Misawa, Kei-ichi Kuma, Takashi Miyata. Nucleic Acids Res 2002
20
A rhodopsin in the brain functions in circadian photoentrainment in Drosophila.
Jinfei D Ni, Lisa S Baik, Todd C Holmes, Craig Montell. Nature 2017
Jinfei D Ni, Lisa S Baik, Todd C Holmes, Craig Montell. Nature 2017
20
Overcoming the loss of blue sensitivity through opsin duplication in the largest animal group, beetles.
Camilla R Sharkey, M Stanley Fujimoto, Nathan P Lord, Seunggwan Shin, Duane D McKenna, Anton Suvorov, Gavin J Martin, Seth M Bybee. Sci Rep 2017
Camilla R Sharkey, M Stanley Fujimoto, Nathan P Lord, Seunggwan Shin, Duane D McKenna, Anton Suvorov, Gavin J Martin, Seth M Bybee. Sci Rep 2017
20
A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae).
Nathan P Lord, Rebecca L Plimpton, Camilla R Sharkey, Anton Suvorov, Jonathan P Lelito, Barry M Willardson, Seth M Bybee. BMC Evol Biol 2016
Nathan P Lord, Rebecca L Plimpton, Camilla R Sharkey, Anton Suvorov, Jonathan P Lelito, Barry M Willardson, Seth M Bybee. BMC Evol Biol 2016
31
Early duplication and functional diversification of the opsin gene family in insects.
Johannes Spaethe, Adriana D Briscoe. Mol Biol Evol 2004
Johannes Spaethe, Adriana D Briscoe. Mol Biol Evol 2004
17
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016
17
Phylogenomics resolves the timing and pattern of insect evolution.
Bernhard Misof, Shanlin Liu, Karen Meusemann, Ralph S Peters, Alexander Donath, Christoph Mayer, Paul B Frandsen, Jessica Ware, Tomáš Flouri, Rolf G Beutel,[...]. Science 2014
Bernhard Misof, Shanlin Liu, Karen Meusemann, Ralph S Peters, Alexander Donath, Christoph Mayer, Paul B Frandsen, Jessica Ware, Tomáš Flouri, Rolf G Beutel,[...]. Science 2014
17
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
Alexandros Stamatakis. Bioinformatics 2014
Alexandros Stamatakis. Bioinformatics 2014
17
Evolution of opsins and phototransduction.
Yoshinori Shichida, Take Matsuyama. Philos Trans R Soc Lond B Biol Sci 2009
Yoshinori Shichida, Take Matsuyama. Philos Trans R Soc Lond B Biol Sci 2009
17
Opsin evolution and expression in arthropod compound eyes and ocelli: insights from the cricket Gryllus bimaculatus.
Miriam J Henze, Kara Dannenhauer, Martin Kohler, Thomas Labhart, Matthias Gesemann. BMC Evol Biol 2012
Miriam J Henze, Kara Dannenhauer, Martin Kohler, Thomas Labhart, Matthias Gesemann. BMC Evol Biol 2012
17
Opsin transcripts of predatory diving beetles: a comparison of surface and subterranean photic niches.
Simon M Tierney, Steven J B Cooper, Kathleen M Saint, Terry Bertozzi, Josephine Hyde, William F Humphreys, Andrew D Austin. R Soc Open Sci 2015
Simon M Tierney, Steven J B Cooper, Kathleen M Saint, Terry Bertozzi, Josephine Hyde, William F Humphreys, Andrew D Austin. R Soc Open Sci 2015
28
Transcriptome analysis and RNA interference of cockroach phototransduction indicate three opsins and suggest a major role for TRPL channels.
Andrew S French, Shannon Meisner, Hongxia Liu, Matti Weckström, Päivi H Torkkeli. Front Physiol 2015
Andrew S French, Shannon Meisner, Hongxia Liu, Matti Weckström, Päivi H Torkkeli. Front Physiol 2015
20
Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
14
Characterisation and localisation of the opsin protein repertoire in the brain and retinas of a spider and an onychophoran.
Bo Joakim Eriksson, David Fredman, Gerhard Steiner, Axel Schmid. BMC Evol Biol 2013
Bo Joakim Eriksson, David Fredman, Gerhard Steiner, Axel Schmid. BMC Evol Biol 2013
14
Metazoan opsin evolution reveals a simple route to animal vision.
Roberto Feuda, Sinead C Hamilton, James O McInerney, Davide Pisani. Proc Natl Acad Sci U S A 2012
Roberto Feuda, Sinead C Hamilton, James O McInerney, Davide Pisani. Proc Natl Acad Sci U S A 2012
14
G protein-coupled receptors in Anopheles gambiae.
Catherine A Hill, A Nicole Fox, R Jason Pitts, Lauren B Kent, Perciliz L Tan, Mathew A Chrystal, Anibal Cravchik, Frank H Collins, Hugh M Robertson, Laurence J Zwiebel. Science 2002
Catherine A Hill, A Nicole Fox, R Jason Pitts, Lauren B Kent, Perciliz L Tan, Mathew A Chrystal, Anibal Cravchik, Frank H Collins, Hugh M Robertson, Laurence J Zwiebel. Science 2002
14
Gene duplication is an evolutionary mechanism for expanding spectral diversity in the long-wavelength photopigments of butterflies.
Francesca D Frentiu, Gary D Bernard, Marilou P Sison-Mangus, Andrew Van Zandt Brower, Adriana D Briscoe. Mol Biol Evol 2007
Francesca D Frentiu, Gary D Bernard, Marilou P Sison-Mangus, Andrew Van Zandt Brower, Adriana D Briscoe. Mol Biol Evol 2007
14
Functional diversification of lepidopteran opsins following gene duplication.
A D Briscoe. Mol Biol Evol 2001
A D Briscoe. Mol Biol Evol 2001
14
The expression of three opsin genes from the compound eye of Helicoverpa armigera (Lepidoptera: Noctuidae) is regulated by a circadian clock, light conditions and nutritional status.
Shuo Yan, Jialin Zhu, Weilong Zhu, Xinfang Zhang, Zhen Li, Xiaoxia Liu, Qingwen Zhang. PLoS One 2014
Shuo Yan, Jialin Zhu, Weilong Zhu, Xinfang Zhang, Zhen Li, Xiaoxia Liu, Qingwen Zhang. PLoS One 2014
20
The retina of Manduca sexta: rhodopsin expression, the mosaic of green-, blue- and UV-sensitive photoreceptors, and regional specialization.
Richard H White, Huihong Xu, Thomas A Münch, Ruth R Bennett, Erin A Grable. J Exp Biol 2003
Richard H White, Huihong Xu, Thomas A Münch, Ruth R Bennett, Erin A Grable. J Exp Biol 2003
14
BLAST+: architecture and applications.
Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, Thomas L Madden. BMC Bioinformatics 2009
Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, Thomas L Madden. BMC Bioinformatics 2009
14
The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins.
M Desmond Ramirez, Autum N Pairett, M Sabrina Pankey, Jeanne M Serb, Daniel I Speiser, Andrew J Swafford, Todd H Oakley. Genome Biol Evol 2016
M Desmond Ramirez, Autum N Pairett, M Sabrina Pankey, Jeanne M Serb, Daniel I Speiser, Andrew J Swafford, Todd H Oakley. Genome Biol Evol 2016
14
Fast and accurate short read alignment with Burrows-Wheeler transform.
Heng Li, Richard Durbin. Bioinformatics 2009
Heng Li, Richard Durbin. Bioinformatics 2009
14
Variation in opsin genes correlates with signalling ecology in North American fireflies.
S E Sander, D W Hall. Mol Ecol 2015
S E Sander, D W Hall. Mol Ecol 2015
20
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.
K J Livak, T D Schmittgen. Methods 2001
K J Livak, T D Schmittgen. Methods 2001
11
Analysis of the opsin repertoire in the tardigrade Hypsibius dujardini provides insights into the evolution of opsin genes in panarthropoda.
Lars Hering, Georg Mayer. Genome Biol Evol 2014
Lars Hering, Georg Mayer. Genome Biol Evol 2014
11
The evolutionary diversity of insect retinal mosaics: common design principles and emerging molecular logic.
Mathias F Wernet, Michael W Perry, Claude Desplan. Trends Genet 2015
Mathias F Wernet, Michael W Perry, Claude Desplan. Trends Genet 2015
11
Ultrafast approximation for phylogenetic bootstrap.
Bui Quang Minh, Minh Anh Thi Nguyen, Arndt von Haeseler. Mol Biol Evol 2013
Bui Quang Minh, Minh Anh Thi Nguyen, Arndt von Haeseler. Mol Biol Evol 2013
11
The evolution and expression of the moth visual opsin family.
Pengjun Xu, Bin Lu, Haijun Xiao, Xiaowei Fu, Robert W Murphy, Kongming Wu. PLoS One 2013
Pengjun Xu, Bin Lu, Haijun Xiao, Xiaowei Fu, Robert W Murphy, Kongming Wu. PLoS One 2013
33
The Drosophila dgq gene encodes a G alpha protein that mediates phototransduction.
Y J Lee, S Shah, E Suzuki, T Zars, P M O'Day, D R Hyde. Neuron 1994
Y J Lee, S Shah, E Suzuki, T Zars, P M O'Day, D R Hyde. Neuron 1994
11
MUSCLE: multiple sequence alignment with high accuracy and high throughput.
Robert C Edgar. Nucleic Acids Res 2004
Robert C Edgar. Nucleic Acids Res 2004
11
The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway.
David C Plachetzki, Caitlin R Fong, Todd H Oakley. Proc Biol Sci 2010
David C Plachetzki, Caitlin R Fong, Todd H Oakley. Proc Biol Sci 2010
11
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
Stéphane Guindon, Jean-François Dufayard, Vincent Lefort, Maria Anisimova, Wim Hordijk, Olivier Gascuel. Syst Biol 2010
Stéphane Guindon, Jean-François Dufayard, Vincent Lefort, Maria Anisimova, Wim Hordijk, Olivier Gascuel. Syst Biol 2010
11
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.
Weizhong Li, Adam Godzik. Bioinformatics 2006
Weizhong Li, Adam Godzik. Bioinformatics 2006
11
Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Daniel I Speiser, M Sabrina Pankey, Alexander K Zaharoff, Barbara A Battelle, Heather D Bracken-Grissom, Jesse W Breinholt, Seth M Bybee, Thomas W Cronin, Anders Garm, Annie R Lindgren,[...]. BMC Bioinformatics 2014
Daniel I Speiser, M Sabrina Pankey, Alexander K Zaharoff, Barbara A Battelle, Heather D Bracken-Grissom, Jesse W Breinholt, Seth M Bybee, Thomas W Cronin, Anders Garm, Annie R Lindgren,[...]. BMC Bioinformatics 2014
11
Function of rhodopsin in temperature discrimination in Drosophila.
Wei L Shen, Young Kwon, Abidemi A Adegbola, Junjie Luo, Andrew Chess, Craig Montell. Science 2011
Wei L Shen, Young Kwon, Abidemi A Adegbola, Junjie Luo, Andrew Chess, Craig Montell. Science 2011
11
Six opsins from the butterfly Papilio glaucus: molecular phylogenetic evidence for paralogous origins of red-sensitive visual pigments in insects.
A D Briscoe. J Mol Evol 2000
A D Briscoe. J Mol Evol 2000
11
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.
Alexandros Stamatakis. Bioinformatics 2006
Alexandros Stamatakis. Bioinformatics 2006
11
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.