A citation-based method for searching scientific literature

Pei-Chi Wei, Amelia N Chang, Jennifer Kao, Zhou Du, Robin M Meyers, Frederick W Alt, Bjoern Schwer. Cell 2016
Times Cited: 153







List of co-cited articles
1153 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes.
Ram Madabhushi, Fan Gao, Andreas R Pfenning, Ling Pan, Satoko Yamakawa, Jinsoo Seo, Richard Rueda, Trongha X Phan, Hidekuni Yamakawa, Ping-Chieh Pao,[...]. Cell 2015
359
29

Mosaic copy number variation in human neurons.
Michael J McConnell, Michael R Lindberg, Kristen J Brennand, Julia C Piper, Thierry Voet, Chris Cowing-Zitron, Svetlana Shumilina, Roger S Lasken, Joris R Vermeesch, Ira M Hall,[...]. Science 2013
338
24

Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network.
Michael J McConnell, John V Moran, Alexej Abyzov, Schahram Akbarian, Taejeong Bae, Isidro Cortes-Ciriano, Jennifer A Erwin, Liana Fasching, Diane A Flasch, Donald Freed,[...]. Science 2017
141
21


Large transcription units unify copy number variants and common fragile sites arising under replication stress.
Thomas E Wilson, Martin F Arlt, So Hae Park, Sountharia Rajendran, Michelle Paulsen, Mats Ljungman, Thomas W Glover. Genome Res 2015
104
19

Physiologic brain activity causes DNA double-strand breaks in neurons, with exacerbation by amyloid-β.
Elsa Suberbielle, Pascal E Sanchez, Alexxai V Kravitz, Xin Wang, Kaitlyn Ho, Kirsten Eilertson, Nino Devidze, Anatol C Kreitzer, Lennart Mucke. Nat Neurosci 2013
267
15

Transcription-associated processes cause DNA double-strand breaks and translocations in neural stem/progenitor cells.
Bjoern Schwer, Pei-Chi Wei, Amelia N Chang, Jennifer Kao, Zhou Du, Robin M Meyers, Frederick W Alt. Proc Natl Acad Sci U S A 2016
66
22

Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases.
Richard L Frock, Jiazhi Hu, Robin M Meyers, Yu-Jui Ho, Erina Kii, Frederick W Alt. Nat Biotechnol 2015
403
14

Somatic mutation in single human neurons tracks developmental and transcriptional history.
Michael A Lodato, Mollie B Woodworth, Semin Lee, Gilad D Evrony, Bhaven K Mehta, Amir Karger, Soohyun Lee, Thomas W Chittenden, Alissa M D'Gama, Xuyu Cai,[...]. Science 2015
310
14

Three classes of recurrent DNA break clusters in brain progenitors identified by 3D proximity-based break joining assay.
Pei-Chi Wei, Cheng-Sheng Lee, Zhou Du, Bjoern Schwer, Yuxiang Zhang, Jennifer Kao, Jeffrey Zurita, Frederick W Alt. Proc Natl Acad Sci U S A 2018
18
77

Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells.
Roberto Chiarle, Yu Zhang, Richard L Frock, Susanna M Lewis, Benoit Molinie, Yu-Jui Ho, Darienne R Myers, Vivian W Choi, Mara Compagno, Daniel J Malkin,[...]. Cell 2011
313
13

Fragile sites in cancer: more than meets the eye.
Thomas W Glover, Thomas E Wilson, Martin F Arlt. Nat Rev Cancer 2017
124
13

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
13

A critical role for DNA end-joining proteins in both lymphogenesis and neurogenesis.
Y Gao, Y Sun, K M Frank, P Dikkes, Y Fujiwara, K J Seidl, J M Sekiguchi, G A Rathbun, W Swat, J Wang,[...]. Cell 1998
541
13

Single-cell, genome-wide sequencing identifies clonal somatic copy-number variation in the human brain.
Xuyu Cai, Gilad D Evrony, Hillel S Lehmann, Princess C Elhosary, Bhaven K Mehta, Annapurna Poduri, Christopher A Walsh. Cell Rep 2014
167
13

Aging and neurodegeneration are associated with increased mutations in single human neurons.
Michael A Lodato, Rachel E Rodin, Craig L Bohrson, Michael E Coulter, Alison R Barton, Minseok Kwon, Maxwell A Sherman, Carl M Vitzthum, Lovelace J Luquette, Chandri N Yandava,[...]. Science 2018
238
13

Identification of early replicating fragile sites that contribute to genome instability.
Jacqueline H Barlow, Robert B Faryabi, Elsa Callén, Nancy Wong, Amy Malhowski, Hua Tang Chen, Gustavo Gutierrez-Cruz, Hong-Wei Sun, Peter McKinnon, George Wright,[...]. Cell 2013
263
12

Genome Organization Drives Chromosome Fragility.
Andres Canela, Yaakov Maman, Seolkyoung Jung, Nancy Wong, Elsa Callen, Amanda Day, Kyong-Rim Kieffer-Kwon, Aleksandra Pekowska, Hongliang Zhang, Suhas S P Rao,[...]. Cell 2017
186
12

Detecting DNA double-stranded breaks in mammalian genomes by linear amplification-mediated high-throughput genome-wide translocation sequencing.
Jiazhi Hu, Robin M Meyers, Junchao Dong, Rohit A Panchakshari, Frederick W Alt, Richard L Frock. Nat Protoc 2016
123
12

DNA damage and its links to neurodegeneration.
Ram Madabhushi, Ling Pan, Li-Huei Tsai. Neuron 2014
327
12

Transcriptional elongation requires DNA break-induced signalling.
Heeyoun Bunch, Brian P Lawney, Yu-Fen Lin, Aroumougame Asaithamby, Ayesha Murshid, Yaoyu E Wang, Benjamin P C Chen, Stuart K Calderwood. Nat Commun 2015
107
11

A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription.
Bong-Gun Ju, Victoria V Lunyak, Valentina Perissi, Ivan Garcia-Bassets, David W Rose, Christopher K Glass, Michael G Rosenfeld. Science 2006
622
11


FANCD2 Facilitates Replication through Common Fragile Sites.
Advaitha Madireddy, Settapong T Kosiyatrakul, Rebecca A Boisvert, Emilia Herrera-Moyano, María L García-Rubio, Jeannine Gerhardt, Elizabeth A Vuono, Nichole Owen, Zi Yan, Susan Olson,[...]. Mol Cell 2016
107
10

Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site.
Anne Letessier, Gaël A Millot, Stéphane Koundrioukoff, Anne-Marie Lachagès, Nicolas Vogt, R Scott Hansen, Bernard Malfoy, Olivier Brison, Michelle Debatisse. Nature 2011
296
10

Replication stress activates DNA repair synthesis in mitosis.
Sheroy Minocherhomji, Songmin Ying, Victoria A Bjerregaard, Sara Bursomanno, Aiste Aleliunaite, Wei Wu, Hocine W Mankouri, Huahao Shen, Ying Liu, Ian D Hickson. Nature 2015
306
10

Mechanisms of programmed DNA lesions and genomic instability in the immune system.
Frederick W Alt, Yu Zhang, Fei-Long Meng, Chunguang Guo, Bjoern Schwer. Cell 2013
293
10


BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks.
Winston X Yan, Reza Mirzazadeh, Silvano Garnerone, David Scott, Martin W Schneider, Tomasz Kallas, Joaquin Custodio, Erik Wernersson, Yinqing Li, Linyi Gao,[...]. Nat Commun 2017
172
9

Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing.
Nicola Crosetto, Abhishek Mitra, Maria Joao Silva, Magda Bienko, Norbert Dojer, Qi Wang, Elif Karaca, Roberto Chiarle, Magdalena Skrzypczak, Krzysztof Ginalski,[...]. Nat Methods 2013
277
9

Disruption of DNA-methylation-dependent long gene repression in Rett syndrome.
Harrison W Gabel, Benyam Kinde, Hume Stroud, Caitlin S Gilbert, David A Harmin, Nathaniel R Kastan, Martin Hemberg, Daniel H Ebert, Michael E Greenberg. Nature 2015
321
9

Signatures of mutation and selection in the cancer genome.
Graham R Bignell, Chris D Greenman, Helen Davies, Adam P Butler, Sarah Edkins, Jenny M Andrews, Gemma Buck, Lina Chen, David Beare, Calli Latimer,[...]. Nature 2010
497
9

Somatic retrotransposition alters the genetic landscape of the human brain.
J Kenneth Baillie, Mark W Barnett, Kyle R Upton, Daniel J Gerhardt, Todd A Richmond, Fioravante De Sapio, Paul M Brennan, Patrizia Rizzu, Sarah Smith, Mark Fell,[...]. Nature 2011
455
9

Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition.
Alysson R Muotri, Vi T Chu, Maria C N Marchetto, Wei Deng, John V Moran, Fred H Gage. Nature 2005
614
9


L1-associated genomic regions are deleted in somatic cells of the healthy human brain.
Jennifer A Erwin, Apuã C M Paquola, Tatjana Singer, Iryna Gallina, Mark Novotny, Carolina Quayle, Tracy A Bedrosian, Francisco I A Alves, Cheyenne R Butcher, Joseph R Herdy,[...]. Nat Neurosci 2016
101
9

Ubiquitous L1 mosaicism in hippocampal neurons.
Kyle R Upton, Daniel J Gerhardt, J Samuel Jesuadian, Sandra R Richardson, Francisco J Sánchez-Luque, Gabriela O Bodea, Adam D Ewing, Carmen Salvador-Palomeque, Marjo S van der Knaap, Paul M Brennan,[...]. Cell 2015
195
9


DNA ligase IV deficiency in mice leads to defective neurogenesis and embryonic lethality via the p53 pathway.
K M Frank, N E Sharpless, Y Gao, J M Sekiguchi, D O Ferguson, C Zhu, J P Manis, J Horner, R A DePinho, F W Alt. Mol Cell 2000
383
9



A Mechanism for Somatic Brain Mosaicism.
Irving L Weissman, Fred H Gage. Cell 2016
17
47

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
8

DNA Breaks and End Resection Measured Genome-wide by End Sequencing.
Andres Canela, Sriram Sridharan, Nicholas Sciascia, Anthony Tubbs, Paul Meltzer, Barry P Sleckman, André Nussenzweig. Mol Cell 2016
124
8

DSBCapture: in situ capture and sequencing of DNA breaks.
Stefanie V Lensing, Giovanni Marsico, Robert Hänsel-Hertsch, Enid Y Lam, David Tannahill, Shankar Balasubramanian. Nat Methods 2016
73
10

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
243
8

Replication stress induces sister-chromatid bridging at fragile site loci in mitosis.
Kok Lung Chan, Timea Palmai-Pallag, Songmin Ying, Ian D Hickson. Nat Cell Biol 2009
424
8

Common fragile site profiling in epithelial and erythroid cells reveals that most recurrent cancer deletions lie in fragile sites hosting large genes.
Benoît Le Tallec, Gaël Armel Millot, Marion Esther Blin, Olivier Brison, Bernard Dutrillaux, Michelle Debatisse. Cell Rep 2013
127
8

L1 retrotransposition in neurons is modulated by MeCP2.
Alysson R Muotri, Maria C N Marchetto, Nicole G Coufal, Ruth Oefner, Gene Yeo, Kinichi Nakashima, Fred H Gage. Nature 2010
416
8

Somatic mutation, genomic variation, and neurological disease.
Annapurna Poduri, Gilad D Evrony, Xuyu Cai, Christopher A Walsh. Science 2013
347
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.