A citation-based method for searching scientific literature

Daria Gawron, Elvis Ndah, Kris Gevaert, Petra Van Damme. Mol Syst Biol 2016
Times Cited: 49







List of co-cited articles
418 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Selecting protein N-terminal peptides by combined fractional diagonal chromatography.
An Staes, Francis Impens, Petra Van Damme, Bart Ruttens, Marc Goethals, Hans Demol, Evy Timmerman, Joël Vandekerckhove, Kris Gevaert. Nat Protoc 2011
130
28

The Perseus computational platform for comprehensive analysis of (prote)omics data.
Stefka Tyanova, Tikira Temu, Pavel Sinitcyn, Arthur Carlson, Marco Y Hein, Tamar Geiger, Matthias Mann, Jürgen Cox. Nat Methods 2016
26

Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans.
Thomas Arnesen, Petra Van Damme, Bogdan Polevoda, Kenny Helsens, Rune Evjenth, Niklaas Colaert, Jan Erik Varhaug, Joël Vandekerckhove, Johan R Lillehaug, Fred Sherman,[...]. Proc Natl Acad Sci U S A 2009
369
22


PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.
Jeroen Crappé, Elvis Ndah, Alexander Koch, Sandra Steyaert, Daria Gawron, Sarah De Keulenaer, Ellen De Meester, Tim De Meyer, Wim Van Criekinge, Petra Van Damme,[...]. Nucleic Acids Res 2015
97
20

Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution.
Sooncheol Lee, Botao Liu, Soohyun Lee, Sheng-Xiong Huang, Ben Shen, Shu-Bing Qian. Proc Natl Acad Sci U S A 2012
387
20

Global quantification of mammalian gene expression control.
Björn Schwanhäusser, Dorothea Busse, Na Li, Gunnar Dittmar, Johannes Schuchhardt, Jana Wolf, Wei Chen, Matthias Selbach. Nature 2011
18


A review of COFRADIC techniques targeting protein N-terminal acetylation.
Petra Van Damme, Jozef Van Damme, Hans Demol, An Staes, Joël Vandekerckhove, Kris Gevaert. BMC Proc 2009
55
16

Proteoform: a single term describing protein complexity.
Lloyd M Smith, Neil L Kelleher. Nat Methods 2013
810
16

NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation.
Petra Van Damme, Kristine Hole, Ana Pimenta-Marques, Kenny Helsens, Joël Vandekerckhove, Rui G Martinho, Kris Gevaert, Thomas Arnesen. PLoS Genet 2011
124
16

The proteomics of N-terminal methionine cleavage.
Frédéric Frottin, Aude Martinez, Philippe Peynot, Sanghamitra Mitra, Richard C Holz, Carmela Giglione, Thierry Meinnel. Mol Cell Proteomics 2006
269
16

Control of protein quality and stoichiometries by N-terminal acetylation and the N-end rule pathway.
Anna Shemorry, Cheol-Sang Hwang, Alexander Varshavsky. Mol Cell 2013
200
16

Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster.
Sandra Goetze, Ermir Qeli, Christian Mosimann, An Staes, Bertran Gerrits, Bernd Roschitzki, Sonali Mohanty, Eva M Niederer, Endre Laczko, Evy Timmerman,[...]. PLoS Biol 2009
128
16

The N-end rule pathway and regulation by proteolysis.
Alexander Varshavsky. Protein Sci 2011
456
16

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
16

The N-terminal methionine of cellular proteins as a degradation signal.
Heon-Ki Kim, Ryu-Ryun Kim, Jang-Hyun Oh, Hanna Cho, Alexander Varshavsky, Cheol-Sang Hwang. Cell 2014
121
14

N-terminal acetylation of cellular proteins creates specific degradation signals.
Cheol-Sang Hwang, Anna Shemorry, Alexander Varshavsky. Science 2010
442
14

A quantitative spatial proteomics analysis of proteome turnover in human cells.
François-Michel Boisvert, Yasmeen Ahmad, Marek Gierliński, Fabien Charrière, Douglas Lamont, Michelle Scott, Geoff Barton, Angus I Lamond. Mol Cell Proteomics 2012
260
14

Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides.
Kris Gevaert, Marc Goethals, Lennart Martens, Jozef Van Damme, An Staes, Grégoire R Thomas, Joël Vandekerckhove. Nat Biotechnol 2003
451
14

Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products.
Oded Kleifeld, Alain Doucet, Ulrich auf dem Keller, Anna Prudova, Oliver Schilling, Rajesh K Kainthan, Amanda E Starr, Leonard J Foster, Jayachandran N Kizhakkedathu, Christopher M Overall. Nat Biotechnol 2010
376
14

Bioinformatics analysis of a Saccharomyces cerevisiae N-terminal proteome provides evidence of alternative translation initiation and post-translational N-terminal acetylation.
Kenny Helsens, Petra Van Damme, Sven Degroeve, Lennart Martens, Thomas Arnesen, Joël Vandekerckhove, Kris Gevaert. J Proteome Res 2011
42
16

Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.
Jürgen Cox, Marco Y Hein, Christian A Luber, Igor Paron, Nagarjuna Nagaraj, Matthias Mann. Mol Cell Proteomics 2014
14

Andromeda: a peptide search engine integrated into the MaxQuant environment.
Jürgen Cox, Nadin Neuhauser, Annette Michalski, Richard A Scheltema, Jesper V Olsen, Matthias Mann. J Proteome Res 2011
14

WebLogo: a sequence logo generator.
Gavin E Crooks, Gary Hon, John-Marc Chandonia, Steven E Brenner. Genome Res 2004
14

Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes.
Nicholas T Ingolia, Gloria A Brar, Noam Stern-Ginossar, Michael S Harris, Gaëlle J S Talhouarne, Sarah E Jackson, Mark R Wills, Jonathan S Weissman. Cell Rep 2014
394
14

First Things First: Vital Protein Marks by N-Terminal Acetyltransferases.
Henriette Aksnes, Adrian Drazic, Michaël Marie, Thomas Arnesen. Trends Biochem Sci 2016
142
14


Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics.
Shao-En Ong, Blagoy Blagoev, Irina Kratchmarova, Dan Bach Kristensen, Hanno Steen, Akhilesh Pandey, Matthias Mann. Mol Cell Proteomics 2002
12

A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites.
Alexander Koch, Daria Gawron, Sandra Steyaert, Elvis Ndah, Jeroen Crappé, Sarah De Keulenaer, Ellen De Meester, Ming Ma, Ben Shen, Kris Gevaert,[...]. Proteomics 2014
56
12

Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources.
Gene-Wei Li, David Burkhardt, Carol Gross, Jonathan S Weissman. Cell 2014
746
12


Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini.
Sami Mahrus, Jonathan C Trinidad, David T Barkan, Andrej Sali, Alma L Burlingame, James A Wells. Cell 2008
336
12

Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC).
An Staes, Petra Van Damme, Kenny Helsens, Hans Demol, Joël Vandekerckhove, Kris Gevaert. Proteomics 2008
124
12

Improved visualization of protein consensus sequences by iceLogo.
Niklaas Colaert, Kenny Helsens, Lennart Martens, Joël Vandekerckhove, Kris Gevaert. Nat Methods 2009
501
12

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.
Ariel A Bazzini, Timothy G Johnstone, Romain Christiano, Sebastian D Mackowiak, Benedikt Obermayer, Elizabeth S Fleming, Charles E Vejnar, Miler T Lee, Nikolaus Rajewsky, Tobias C Walther,[...]. EMBO J 2014
398
12

Detecting actively translated open reading frames in ribosome profiling data.
Lorenzo Calviello, Neelanjan Mukherjee, Emanuel Wyler, Henrik Zauber, Antje Hirsekorn, Matthias Selbach, Markus Landthaler, Benedikt Obermayer, Uwe Ohler. Nat Methods 2016
215
12

Observation of dually decoded regions of the human genome using ribosome profiling data.
Audrey M Michel, Kingshuk Roy Choudhury, Andrew E Firth, Nicholas T Ingolia, John F Atkins, Pavel V Baranov. Genome Res 2012
129
12

GWIPS-viz: development of a ribo-seq genome browser.
Audrey M Michel, Gearoid Fox, Anmol M Kiran, Christof De Bo, Patrick B F O'Connor, Stephen M Heaphy, James P A Mullan, Claire A Donohue, Desmond G Higgins, Pavel V Baranov. Nucleic Acids Res 2014
153
12


Turnover of the human proteome: determination of protein intracellular stability by dynamic SILAC.
Mary K Doherty, Dean E Hammond, Michael J Clague, Simon J Gaskell, Robert J Beynon. J Proteome Res 2009
227
10

Biochemical and cellular analysis of Ogden syndrome reveals downstream Nt-acetylation defects.
Line M Myklebust, Petra Van Damme, Svein I Støve, Max J Dörfel, Angèle Abboud, Thomas V Kalvik, Cedric Grauffel, Veronique Jonckheere, Yiyang Wu, Jeffrey Swensen,[...]. Hum Mol Genet 2015
70
10

N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.
Petra Van Damme, Marta Lasa, Bogdan Polevoda, Cristina Gazquez, Alberto Elosegui-Artola, Duk Soo Kim, Elena De Juan-Pardo, Kimberly Demeyer, Kristine Hole, Esther Larrea,[...]. Proc Natl Acad Sci U S A 2012
128
10

Protein N-terminal acetyltransferases: when the start matters.
Kristian K Starheim, Kris Gevaert, Thomas Arnesen. Trends Biochem Sci 2012
197
10

Global protein stability profiling in mammalian cells.
Hsueh-Chi Sherry Yen, Qikai Xu, Danny M Chou, Zhenming Zhao, Stephen J Elledge. Science 2008
314
10

Systems-wide proteomic analysis in mammalian cells reveals conserved, functional protein turnover.
Sidney B Cambridge, Florian Gnad, Chuong Nguyen, Justo Lorenzo Bermejo, Marcus Krüger, Matthias Mann. J Proteome Res 2011
177
10

The proteome under translational control.
Daria Gawron, Kris Gevaert, Petra Van Damme. Proteomics 2014
33
15

Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-α-acetylation features.
Willy V Bienvenut, David Sumpton, Aude Martinez, Sergio Lilla, Christelle Espagne, Thierry Meinnel, Carmela Giglione. Mol Cell Proteomics 2012
113
10



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.