A citation-based method for searching scientific literature

Isis Ricaño-Ponce, Daria V Zhernakova, Patrick Deelen, Oscar Luo, Xingwang Li, Aaron Isaacs, Juha Karjalainen, Jennifer Di Tommaso, Zuzanna Agnieszka Borek, Maria M Zorro, Javier Gutierrez-Achury, Andre G Uitterlinden, Albert Hofman, Joyce van Meurs, Mihai G Netea, Iris H Jonkers, Sebo Withoff, Cornelia M van Duijn, Yang Li, Yijun Ruan, Lude Franke, Cisca Wijmenga, Vinod Kumar. J Autoimmun 2016
Times Cited: 45







List of co-cited articles
443 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genetic and epigenetic fine mapping of causal autoimmune disease variants.
Kyle Kai-How Farh, Alexander Marson, Jiang Zhu, Markus Kleinewietfeld, William J Housley, Samantha Beik, Noam Shoresh, Holly Whitton, Russell J H Ryan, Alexander A Shishkin,[...]. Nature 2015
31

Multiple common variants for celiac disease influencing immune gene expression.
Patrick C A Dubois, Gosia Trynka, Lude Franke, Karen A Hunt, Jihane Romanos, Alessandra Curtotti, Alexandra Zhernakova, Graham A R Heap, Róza Adány, Arpo Aromaa,[...]. Nat Genet 2010
651
28

Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.
Gosia Trynka, Karen A Hunt, Nicholas A Bockett, Jihane Romanos, Vanisha Mistry, Agata Szperl, Sjoerd F Bakker, Maria Teresa Bardella, Leena Bhaw-Rosun, Gemma Castillejo,[...]. Nat Genet 2011
502
28

Human disease-associated genetic variation impacts large intergenic non-coding RNA expression.
Vinod Kumar, Harm-Jan Westra, Juha Karjalainen, Daria V Zhernakova, Tõnu Esko, Barbara Hrdlickova, Rodrigo Almeida, Alexandra Zhernakova, Eva Reinmaa, Urmo Võsa,[...]. PLoS Genet 2013
200
22

Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity.
Barbara Hrdlickova, Vinod Kumar, Kartiek Kanduri, Daria V Zhernakova, Subhash Tripathi, Juha Karjalainen, Riikka J Lund, Yang Li, Ubaid Ullah, Rutger Modderman,[...]. Genome Med 2014
77
22

Expression analysis in intestinal mucosa reveals complex relations among genes under the association peaks in celiac disease.
Leticia Plaza-Izurieta, Nora Fernandez-Jimenez, Iñaki Irastorza, Amaia Jauregi-Miguel, Irati Romero-Garmendia, Juan Carlos Vitoria, Jose Ramon Bilbao. Eur J Hum Genet 2015
28
32

Systematic annotation of celiac disease loci refines pathological pathways and suggests a genetic explanation for increased interferon-gamma levels.
Vinod Kumar, Javier Gutierrez-Achury, Kartiek Kanduri, Rodrigo Almeida, Barbara Hrdlickova, Daria V Zhernakova, Harm-Jan Westra, Juha Karjalainen, Isis Ricaño-Ponce, Yang Li,[...]. Hum Mol Genet 2015
47
20

Coregulation and modulation of NFκB-related genes in celiac disease: uncovered aspects of gut mucosal inflammation.
Nora Fernandez-Jimenez, Ainara Castellanos-Rubio, Leticia Plaza-Izurieta, Iñaki Irastorza, Xabier Elcoroaristizabal, Amaia Jauregi-Miguel, Tamara Lopez-Euba, Carlos Tutau, Marian M de Pancorbo, Juan Carlos Vitoria,[...]. Hum Mol Genet 2014
59
20

A long noncoding RNA associated with susceptibility to celiac disease.
Ainara Castellanos-Rubio, Nora Fernandez-Jimenez, Radomir Kratchmarov, Xiaobing Luo, Govind Bhagat, Peter H R Green, Robert Schneider, Megerditch Kiledjian, Jose Ramon Bilbao, Sankar Ghosh. Science 2016
153
17

Newly identified genetic risk variants for celiac disease related to the immune response.
Karen A Hunt, Alexandra Zhernakova, Graham Turner, Graham A R Heap, Lude Franke, Marcel Bruinenberg, Jihane Romanos, Lotte C Dinesen, Anthony W Ryan, Davinder Panesar,[...]. Nat Genet 2008
485
15

A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21.
David A van Heel, Lude Franke, Karen A Hunt, Rhian Gwilliam, Alexandra Zhernakova, Mike Inouye, Martin C Wapenaar, Martin C N M Barnardo, Graeme Bethel, Geoffrey K T Holmes,[...]. Nat Genet 2007
485
15

Understanding Celiac Disease by Genomics.
Sebo Withoff, Yang Li, Iris Jonkers, Cisca Wijmenga. Trends Genet 2016
47
13

Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.
Yun R Li, Jin Li, Sihai D Zhao, Jonathan P Bradfield, Frank D Mentch, S Melkorka Maggadottir, Cuiping Hou, Debra J Abrams, Diana Chang, Feng Gao,[...]. Nat Med 2015
140
13


Negligible impact of rare autoimmune-locus coding-region variants on missing heritability.
Karen A Hunt, Vanisha Mistry, Nicholas A Bockett, Tariq Ahmad, Maria Ban, Jonathan N Barker, Jeffrey C Barrett, Hannah Blackburn, Oliver Brand, Oliver Burren,[...]. Nature 2013
138
11

Systematic localization of common disease-associated variation in regulatory DNA.
Matthew T Maurano, Richard Humbert, Eric Rynes, Robert E Thurman, Eric Haugen, Hao Wang, Alex P Reynolds, Richard Sandstrom, Hongzhu Qu, Jennifer Brody,[...]. Science 2012
11

Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.
Javier Gutierrez-Achury, Maria Magdalena Zorro, Isis Ricaño-Ponce, Daria V Zhernakova, Dorothée Diogo, Soumya Raychaudhuri, Lude Franke, Gosia Trynka, Cisca Wijmenga, Alexandra Zhernakova. Hum Mol Genet 2016
18
27

Fine mapping in the MHC region accounts for 18% additional genetic risk for celiac disease.
Javier Gutierrez-Achury, Alexandra Zhernakova, Sara L Pulit, Gosia Trynka, Karen A Hunt, Jihane Romanos, Soumya Raychaudhuri, David A van Heel, Cisca Wijmenga, Paul I W de Bakker. Nat Genet 2015
93
11

Cohort profile: LifeLines DEEP, a prospective, general population cohort study in the northern Netherlands: study design and baseline characteristics.
Ettje F Tigchelaar, Alexandra Zhernakova, Jackie A M Dekens, Gerben Hermes, Agnieszka Baranska, Zlatan Mujagic, Morris A Swertz, Angélica M Muñoz, Patrick Deelen, Maria C Cénit,[...]. BMJ Open 2015
123
11

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters.
Biola M Javierre, Oliver S Burren, Steven P Wilder, Roman Kreuzhuber, Steven M Hill, Sven Sewitz, Jonathan Cairns, Steven W Wingett, Csilla Várnai, Michiel J Thiecke,[...]. Cell 2016
484
11


Identification of context-dependent expression quantitative trait loci in whole blood.
Daria V Zhernakova, Patrick Deelen, Martijn Vermaat, Maarten van Iterson, Michiel van Galen, Wibowo Arindrarto, Peter van 't Hof, Hailiang Mei, Freerk van Dijk, Harm-Jan Westra,[...]. Nat Genet 2017
204
11

Systematic identification of trans eQTLs as putative drivers of known disease associations.
Harm-Jan Westra, Marjolein J Peters, Tõnu Esko, Hanieh Yaghootkar, Claudia Schurmann, Johannes Kettunen, Mark W Christiansen, Benjamin P Fairfax, Katharina Schramm, Joseph E Powell,[...]. Nat Genet 2013
11

Cytoplasmic Form of Carlr lncRNA Facilitates Inflammatory Gene Expression upon NF-κB Activation.
Ainara Castellanos-Rubio, Radomir Kratchmarov, Maialen Sebastian, Koldo Garcia-Etxebarria, Liher Garcia, Iñaki Irastorza, Sankar Ghosh. J Immunol 2017
21
23

Super-enhancers delineate disease-associated regulatory nodes in T cells.
Golnaz Vahedi, Yuka Kanno, Yasuko Furumoto, Kan Jiang, Stephen C J Parker, Michael R Erdos, Sean R Davis, Rahul Roychoudhuri, Nicholas P Restifo, Massimo Gadina,[...]. Nature 2015
237
8

Revisiting genome wide association studies (GWAS) in coeliac disease: replication study in Spanish population and expression analysis of candidate genes.
Leticia Plaza-Izurieta, Ainara Castellanos-Rubio, Iñaki Irastorza, Nora Fernández-Jimenez, Galder Gutierrez, Jose Ramon Bilbao. J Med Genet 2011
46
8

Genetics of rheumatoid arthritis contributes to biology and drug discovery.
Yukinori Okada, Di Wu, Gosia Trynka, Towfique Raj, Chikashi Terao, Katsunori Ikari, Yuta Kochi, Koichiro Ohmura, Akari Suzuki, Shinji Yoshida,[...]. Nature 2014
8

Coeliac disease-associated polymorphisms influence thymic gene expression.
S S Amundsen, M K Viken, L M Sollid, B A Lie. Genes Immun 2014
13
30

Common genetic variants modulate pathogen-sensing responses in human dendritic cells.
Mark N Lee, Chun Ye, Alexandra-Chloé Villani, Towfique Raj, Weibo Li, Thomas M Eisenhaure, Selina H Imboywa, Portia I Chipendo, F Ann Ran, Kamil Slowikowski,[...]. Science 2014
281
8

Mapping of immune-mediated disease genes.
Isis Ricaño-Ponce, Cisca Wijmenga. Annu Rev Genomics Hum Genet 2013
83
8

Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling.
G Trynka, A Zhernakova, J Romanos, L Franke, K A Hunt, G Turner, M Bruinenberg, G A Heap, M Platteel, A W Ryan,[...]. Gut 2009
143
8

Innate immune activity conditions the effect of regulatory variants upon monocyte gene expression.
Benjamin P Fairfax, Peter Humburg, Seiko Makino, Vivek Naranbhai, Daniel Wong, Evelyn Lau, Luke Jostins, Katharine Plant, Robert Andrews, Chris McGee,[...]. Science 2014
465
8

Inter-individual variability and genetic influences on cytokine responses to bacteria and fungi.
Yang Li, Marije Oosting, Patrick Deelen, Isis Ricaño-Ponce, Sanne Smeekens, Martin Jaeger, Vasiliki Matzaraki, Morris A Swertz, Ramnik J Xavier, Lude Franke,[...]. Nat Med 2016
105
8

Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.
Alexandra Zhernakova, Eli A Stahl, Gosia Trynka, Soumya Raychaudhuri, Eleanora A Festen, Lude Franke, Harm-Jan Westra, Rudolf S N Fehrmann, Fina A S Kurreeman, Brian Thomson,[...]. PLoS Genet 2011
262
8

Brief Report: IRF4 Newly Identified as a Common Susceptibility Locus for Systemic Sclerosis and Rheumatoid Arthritis in a Cross-Disease Meta-Analysis of Genome-Wide Association Studies.
Elena López-Isac, Jose-Ezequiel Martín, Shervin Assassi, Carmen P Simeón, Patricia Carreira, Norberto Ortego-Centeno, Mayka Freire, Emma Beltrán, Javier Narváez, Juan J Alegre-Sancho,[...]. Arthritis Rheumatol 2016
29
13


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
8

10 Years of GWAS Discovery: Biology, Function, and Translation.
Peter M Visscher, Naomi R Wray, Qian Zhang, Pamela Sklar, Mark I McCarthy, Matthew A Brown, Jian Yang. Am J Hum Genet 2017
8

A long noncoding RNA mediates both activation and repression of immune response genes.
Susan Carpenter, Daniel Aiello, Maninjay K Atianand, Emiliano P Ricci, Pallavi Gandhi, Lisa L Hall, Meg Byron, Brian Monks, Meabh Henry-Bezy, Jeanne B Lawrence,[...]. Science 2013
668
8

Gene regulation in the immune system by long noncoding RNAs.
Y Grace Chen, Ansuman T Satpathy, Howard Y Chang. Nat Immunol 2017
391
8

Emerging role of long noncoding RNAs in autoimmune diseases.
Guo-Cui Wu, Hai-Feng Pan, Rui-Xue Leng, De-Guang Wang, Xiang-Pei Li, Xiao-Mei Li, Dong-Qing Ye. Autoimmun Rev 2015
173
8

Diagnostic criteria for multiple sclerosis: 2010 revisions to the McDonald criteria.
Chris H Polman, Stephen C Reingold, Brenda Banwell, Michel Clanet, Jeffrey A Cohen, Massimo Filippi, Kazuo Fujihara, Eva Havrdova, Michael Hutchinson, Ludwig Kappos,[...]. Ann Neurol 2011
8

Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.
Ashley H Beecham, Nikolaos A Patsopoulos, Dionysia K Xifara, Mary F Davis, Anu Kemppinen, Chris Cotsapas, Tejas S Shah, Chris Spencer, David Booth, An Goris,[...]. Nat Genet 2013
875
8

Immunochip meta-analysis in European and Argentinian populations identifies two novel genetic loci associated with celiac disease.
Isis Ricaño-Ponce, Javier Gutierrez-Achury, Ana Florencia Costa, Patrick Deelen, Alexander Kurilshikov, Maria Magdalena Zorro, Mathieu Platteel, Adriaan van der Graaf, Serena Sanna, Oscar Daffra,[...]. Eur J Hum Genet 2020
12
33

A meta-analysis of genome-wide association scans identifies IL18RAP, PTPN2, TAGAP, and PUS10 as shared risk loci for Crohn's disease and celiac disease.
Eleonora A M Festen, Philippe Goyette, Todd Green, Gabrielle Boucher, Claudine Beauchamp, Gosia Trynka, Patrick C Dubois, Caroline Lagacé, Pieter C F Stokkers, Daan W Hommes,[...]. PLoS Genet 2011
139
6

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
6

Capture Hi-C reveals novel candidate genes and complex long-range interactions with related autoimmune risk loci.
Paul Martin, Amanda McGovern, Gisela Orozco, Kate Duffus, Annie Yarwood, Stefan Schoenfelder, Nicholas J Cooper, Anne Barton, Chris Wallace, Peter Fraser,[...]. Nat Commun 2015
106
6

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
Jason D Buenrostro, Paul G Giresi, Lisa C Zaba, Howard Y Chang, William J Greenleaf. Nat Methods 2013
6

Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes.
Towfique Raj, Katie Rothamel, Sara Mostafavi, Chun Ye, Mark N Lee, Joseph M Replogle, Ting Feng, Michelle Lee, Natasha Asinovski, Irene Frohlich,[...]. Science 2014
318
6

An atlas of active enhancers across human cell types and tissues.
Robin Andersson, Claudia Gebhard, Irene Miguel-Escalada, Ilka Hoof, Jette Bornholdt, Mette Boyd, Yun Chen, Xiaobei Zhao, Christian Schmidl, Takahiro Suzuki,[...]. Nature 2014
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.