A citation-based method for searching scientific literature

Ed Reznik, Martin L Miller, Yasin Şenbabaoğlu, Nadeem Riaz, Judy Sarungbam, Satish K Tickoo, Hikmat A Al-Ahmadie, William Lee, Venkatraman E Seshan, A Ari Hakimi, Chris Sander. Elife 2016
Times Cited: 199







List of co-cited articles
843 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer.
Young Seok Ju, Ludmil B Alexandrov, Moritz Gerstung, Inigo Martincorena, Serena Nik-Zainal, Manasa Ramakrishna, Helen R Davies, Elli Papaemmanuil, Gunes Gundem, Adam Shlien,[...]. Elife 2014
192
19

Mitochondria and cancer.
Douglas C Wallace. Nat Rev Cancer 2012
19

On the origin of cancer cells.
O WARBURG. Science 1956
16

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
15

Mitochondrial respiratory gene expression is suppressed in many cancers.
Ed Reznik, Qingguo Wang, Konnor La, Nikolaus Schultz, Chris Sander. Elife 2017
48
31

Heteroplasmic shifts in tumor mitochondrial genomes reveal tissue-specific signals of relaxed and positive selection.
Sneha Grandhi, Colleen Bosworth, Wesley Maddox, Cole Sensiba, Sara Akhavanfard, Ying Ni, Thomas LaFramboise. Hum Mol Genet 2017
23
47

Mitochondria and Cancer.
Sejal Vyas, Elma Zaganjor, Marcia C Haigis. Cell 2016
585
11

Reduced mitochondrial DNA copy number is correlated with tumor progression and prognosis in Chinese breast cancer patients.
Man Yu, Yunli Zhou, Yurong Shi, Liansheng Ning, Yi Yang, Xiyin Wei, Ning Zhang, Xishan Hao, Ruifang Niu. IUBMB Life 2007
171
11

mtDNA mutations increase tumorigenicity in prostate cancer.
John A Petros, Amanda K Baumann, Eduardo Ruiz-Pesini, Mahul B Amin, Carrie Qi Sun, John Hall, SoDug Lim, Muta M Issa, W Dana Flanders, Seyed H Hosseini,[...]. Proc Natl Acad Sci U S A 2005
586
10

Mitochondrial DNA mutations and mitochondrial DNA depletion in breast cancer.
Ling-Ming Tseng, Pen-Hui Yin, Chin-Wen Chi, Chih-Yi Hsu, Chew-Wun Wu, Liang-Ming Lee, Yau-Huei Wei, Hsin-Chen Lee. Genes Chromosomes Cancer 2006
188
10


Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
10

Number matters: control of mammalian mitochondrial DNA copy number.
Laura L Clay Montier, Janice J Deng, Yidong Bai. J Genet Genomics 2009
294
10

Spectrum of somatic mitochondrial mutations in five cancers.
Tatianna C Larman, Steven R DePalma, Angela G Hadjipanayis, Alexei Protopopov, Jianhua Zhang, Stacey B Gabriel, Lynda Chin, Christine E Seidman, Raju Kucherlapati, J G Seidman. Proc Natl Acad Sci U S A 2012
141
9

ROS-generating mitochondrial DNA mutations can regulate tumor cell metastasis.
Kaori Ishikawa, Keizo Takenaga, Miho Akimoto, Nobuko Koshikawa, Aya Yamaguchi, Hirotake Imanishi, Kazuto Nakada, Yoshio Honma, Jun-Ichi Hayashi. Science 2008
872
9

Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.
R M Andrews, I Kubacka, P F Chinnery, R N Lightowlers, D M Turnbull, N Howell. Nat Genet 1999
8

Understanding the Warburg effect: the metabolic requirements of cell proliferation.
Matthew G Vander Heiden, Lewis C Cantley, Craig B Thompson. Science 2009
8

Mitochondrial DNA mutations and mitochondrial DNA depletion in gastric cancer.
Chew-Wun Wu, Pen-Hui Yin, Wen-Yi Hung, Anna Fen-Yau Li, Shu-Hui Li, Chin-Wen Chi, Yau-Huei Wei, Hsin-Chen Lee. Genes Chromosomes Cancer 2005
188
8

Simultaneous DNA and RNA Mapping of Somatic Mitochondrial Mutations across Diverse Human Cancers.
James B Stewart, Babak Alaei-Mahabadi, Radhakrishnan Sabarinathan, Tore Samuelsson, Jan Gorodkin, Claes M Gustafsson, Erik Larsson. PLoS Genet 2015
56
14

Mitochondrial DNA mutations in human disease.
Robert W Taylor, Doug M Turnbull. Nat Rev Genet 2005
8

Mitochondrial DNA content varies with pathological characteristics of breast cancer.
Ren-Kui Bai, Julia Chang, Kun-Tu Yeh, Mary Ann Lou, Jyh-Feng Lu, Duan-Jun Tan, Hao Liu, Lee-Jun C Wong. J Oncol 2011
43
18

Age-Related and Heteroplasmy-Related Variation in Human mtDNA Copy Number.
Manja Wachsmuth, Alexander Hübner, Mingkun Li, Burkhard Madea, Mark Stoneking. PLoS Genet 2016
68
11

Mitochondrial DNA copy number in peripheral blood cells declines with age and is associated with general health among elderly.
Jonas Mengel-From, Mikael Thinggaard, Christine Dalgård, Kirsten Ohm Kyvik, Kaare Christensen, Lene Christiansen. Hum Genet 2014
149
8

Mitochondrial mutations in cancer.
M Brandon, P Baldi, D C Wallace. Oncogene 2006
555
7

Mitochondria and Cancer.
Wei-Xing Zong, Joshua D Rabinowitz, Eileen White. Mol Cell 2016
332
7

Human mitochondrial DNA: roles of inherited and somatic mutations.
Eric A Schon, Salvatore DiMauro, Michio Hirano. Nat Rev Genet 2012
394
7

Association of decreased mitochondrial DNA content with the progression of colorectal cancer.
HaiHong Cui, Ping Huang, ZhiJing Wang, YunXin Zhang, ZhenHua Zhang, Wei Xu, XiaoPeng Wang, Ying Han, XiaoMing Guo. BMC Cancer 2013
45
15


The Genomic Landscape of Renal Oncocytoma Identifies a Metabolic Barrier to Tumorigenesis.
Shilpy Joshi, Denis Tolkunov, Hana Aviv, Abraham A Hakimi, Ming Yao, James J Hsieh, Shridar Ganesan, Chang S Chan, Eileen White. Cell Rep 2015
78
8

How do changes in the mtDNA and mitochondrial dysfunction influence cancer and cancer therapy? Challenges, opportunities and models.
M W van Gisbergen, A M Voets, M H W Starmans, I F M de Coo, R Yadak, R F Hoffmann, P C Boutros, H J M Smeets, L Dubois, P Lambin. Mutat Res Rev Mutat Res 2015
107
7

Mitochondrial copy number is associated with colorectal cancer risk.
Bharat Thyagarajan, Renwei Wang, Helene Barcelo, Woon-Puay Koh, Jian-Min Yuan. Cancer Epidemiol Biomarkers Prev 2012
64
10

Association of Mitochondrial DNA Copy Number With Cardiovascular Disease.
Foram N Ashar, Yiyi Zhang, Ryan J Longchamps, John Lane, Anna Moes, Megan L Grove, Josyf C Mychaleckyj, Kent D Taylor, Josef Coresh, Jerome I Rotter,[...]. JAMA Cardiol 2017
72
9

Oxidative Phosphorylation as an Emerging Target in Cancer Therapy.
Thomas M Ashton, W Gillies McKenna, Leoni A Kunz-Schughart, Geoff S Higgins. Clin Cancer Res 2018
197
7

Mitochondrial DNA genetics and the heteroplasmy conundrum in evolution and disease.
Douglas C Wallace, Dimitra Chalkia. Cold Spring Harb Perspect Biol 2013
308
6

Heteroplasmic mitochondrial DNA mutations in normal and tumour cells.
Yiping He, Jian Wu, Devin C Dressman, Christine Iacobuzio-Donahue, Sanford D Markowitz, Victor E Velculescu, Luis A Diaz, Kenneth W Kinzler, Bert Vogelstein, Nickolas Papadopoulos. Nature 2010
359
6


The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
6


Facile detection of mitochondrial DNA mutations in tumors and bodily fluids.
M S Fliss, H Usadel, O L Caballero, L Wu, M R Buta, S M Eleff, J Jen, D Sidransky. Science 2000
625
6


Mitochondrial DNA content in paired normal and cancerous breast tissue samples from patients with breast cancer.
Alex Xiu-Cheng Fan, Ramin Radpour, Mahdi Montazer Haghighi, Corina Kohler, Peng Xia, Sinuhe Hahn, Wolfgang Holzgreve, Xiao Yan Zhong. J Cancer Res Clin Oncol 2009
53
11

Mitochondrial DNA copy number is regulated in a tissue specific manner by DNA methylation of the nuclear-encoded DNA polymerase gamma A.
Richard D W Kelly, Arsalan Mahmud, Matthew McKenzie, Ian A Trounce, Justin C St John. Nucleic Acids Res 2012
106
6

Tissue-specific mtDNA abundance from exome data and its correlation with mitochondrial transcription, mass and respiratory activity.
Anna Maria D'Erchia, Anna Atlante, Gemma Gadaleta, Giulio Pavesi, Matteo Chiara, Caterina De Virgilio, Caterina Manzari, Francesca Mastropasqua, Gian Marco Prazzoli, Ernesto Picardi,[...]. Mitochondrion 2015
60
10

Metformin inhibits mitochondrial complex I of cancer cells to reduce tumorigenesis.
William W Wheaton, Samuel E Weinberg, Robert B Hamanaka, Saul Soberanes, Lucas B Sullivan, Elena Anso, Andrea Glasauer, Eric Dufour, Gokhan M Mutlu, Gr Scott Budigner,[...]. Elife 2014
521
6

The Warburg Effect: How Does it Benefit Cancer Cells?
Maria V Liberti, Jason W Locasale. Trends Biochem Sci 2016
6

Mitochondrial DNA quantity increases with histopathologic grade in premalignant and malignant head and neck lesions.
Michael M Kim, John D Clinger, Brett G Masayesva, Patrick K Ha, Marianna L Zahurak, William H Westra, Joseph A Califano. Clin Cancer Res 2004
119
6

Tumor-specific changes in mtDNA content in human cancer.
Elizabeth Mambo, Aditi Chatterjee, Mingzhao Xing, Giovanni Tallini, Bryan R Haugen, Sai-Ching J Yeung, Saraswati Sukumar, David Sidransky. Int J Cancer 2005
131
6

Precise determination of mitochondrial DNA copy number in human skeletal and cardiac muscle by a PCR-based assay: lack of change of copy number with age.
Francis J Miller, Franklin L Rosenfeldt, Chunfang Zhang, Anthony W Linnane, Phillip Nagley. Nucleic Acids Res 2003
212
6

Somatic mutations in the D-loop and decrease in the copy number of mitochondrial DNA in human hepatocellular carcinoma.
Hsin-Chen Lee, Shu-Hui Li, Jin-Ching Lin, Cheng-Chung Wu, Dah-Cherg Yeh, Yau-Huei Wei. Mutat Res 2004
197
6

Association of mitochondrial DNA levels with frailty and all-cause mortality.
Foram N Ashar, Anna Moes, Ann Z Moore, Megan L Grove, Paulo H M Chaves, Josef Coresh, Anne B Newman, Amy M Matteini, Karen Bandeen-Roche, Eric Boerwinkle,[...]. J Mol Med (Berl) 2015
81
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.