A citation-based method for searching scientific literature

Shanna L Resendez, Josh H Jennings, Randall L Ung, Vijay Mohan K Namboodiri, Zhe Charles Zhou, James M Otis, Hiroshi Nomura, Jenna A McHenry, Oksana Kosyk, Garret D Stuber. Nat Protoc 2016
Times Cited: 113







List of co-cited articles
791 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
45

Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
435
42

Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data.
Pengcheng Zhou, Shanna L Resendez, Jose Rodriguez-Romaguera, Jessica C Jimenez, Shay Q Neufeld, Andrea Giovannucci, Johannes Friedrich, Eftychios A Pnevmatikakis, Garret D Stuber, Rene Hen,[...]. Elife 2018
134
34

Long-term dynamics of CA1 hippocampal place codes.
Yaniv Ziv, Laurie D Burns, Eric D Cocker, Elizabeth O Hamel, Kunal K Ghosh, Lacey J Kitch, Abbas El Gamal, Mark J Schnitzer. Nat Neurosci 2013
424
29

Automated analysis of cellular signals from large-scale calcium imaging data.
Eran A Mukamel, Axel Nimmerjahn, Mark J Schnitzer. Neuron 2009
325
26

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
306
21

A shared neural ensemble links distinct contextual memories encoded close in time.
Denise J Cai, Daniel Aharoni, Tristan Shuman, Justin Shobe, Jeremy Biane, Weilin Song, Brandon Wei, Michael Veshkini, Mimi La-Vu, Jerry Lou,[...]. Nature 2016
315
21

Visualizing hypothalamic network dynamics for appetitive and consummatory behaviors.
Joshua H Jennings, Randall L Ung, Shanna L Resendez, Alice M Stamatakis, Johnathon G Taylor, Jonathan Huang, Katie Veleta, Pranish A Kantak, Megumi Aita, Kelson Shilling-Scrivo,[...]. Cell 2015
265
19

High-speed, miniaturized fluorescence microscopy in freely moving mice.
Benjamin A Flusberg, Axel Nimmerjahn, Eric D Cocker, Eran A Mukamel, Robert P J Barretto, Tony H Ko, Laurie D Burns, Juergen C Jung, Mark J Schnitzer. Nat Methods 2008
213
14

Natural neural projection dynamics underlying social behavior.
Lisa A Gunaydin, Logan Grosenick, Joel C Finkelstein, Isaac V Kauvar, Lief E Fenno, Avishek Adhikari, Stephan Lammel, Julie J Mirzabekov, Raag D Airan, Kelly A Zalocusky,[...]. Cell 2014
566
13

A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons.
D Gowanlock R Tervo, Bum-Yeol Hwang, Sarada Viswanathan, Thomas Gaj, Maria Lavzin, Kimberly D Ritola, Sarah Lindo, Susan Michael, Elena Kuleshova, David Ojala,[...]. Neuron 2016
421
13

Minimally invasive microendoscopy system for in vivo functional imaging of deep nuclei in the mouse brain.
Miriam E Bocarsly, Wan-Chen Jiang, Chen Wang, Joshua T Dudman, Na Ji, Yeka Aponte. Biomed Opt Express 2015
45
28

Simultaneous fast measurement of circuit dynamics at multiple sites across the mammalian brain.
Christina K Kim, Samuel J Yang, Nandini Pichamoorthy, Noah P Young, Isaac Kauvar, Joshua H Jennings, Talia N Lerner, Andre Berndt, Soo Yeun Lee, Charu Ramakrishnan,[...]. Nat Methods 2016
147
12



Construction of implantable optical fibers for long-term optogenetic manipulation of neural circuits.
Dennis R Sparta, Alice M Stamatakis, Jana L Phillips, Nanna Hovelsø, Ruud van Zessen, Garret D Stuber. Nat Protoc 2011
213
12

Prefrontal cortex output circuits guide reward seeking through divergent cue encoding.
James M Otis, Vijay M K Namboodiri, Ana M Matan, Elisa S Voets, Emily P Mohorn, Oksana Kosyk, Jenna A McHenry, J Elliott Robinson, Shanna L Resendez, Mark A Rossi,[...]. Nature 2017
161
12

Tracking the Same Neurons across Multiple Days in Ca2+ Imaging Data.
Liron Sheintuch, Alon Rubin, Noa Brande-Eilat, Nitzan Geva, Noa Sadeh, Or Pinchasof, Yaniv Ziv. Cell Rep 2017
54
22

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
359
12

Time-lapse imaging of disease progression in deep brain areas using fluorescence microendoscopy.
Robert P J Barretto, Tony H Ko, Juergen C Jung, Tammy J Wang, George Capps, Allison C Waters, Yaniv Ziv, Alessio Attardo, Lawrence Recht, Mark J Schnitzer. Nat Med 2011
136
11

Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat Neurosci 2016
263
11

Neural ensemble dynamics underlying a long-term associative memory.
Benjamin F Grewe, Jan Gründemann, Lacey J Kitch, Jerome A Lecoq, Jones G Parker, Jesse D Marshall, Margaret C Larkin, Pablo E Jercog, Francois Grenier, Jin Zhong Li,[...]. Nature 2017
124
11

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
192
11

In vivo mammalian brain imaging using one- and two-photon fluorescence microendoscopy.
Juergen C Jung, Amit D Mehta, Emre Aksay, Raymond Stepnoski, Mark J Schnitzer. J Neurophysiol 2004
201
10

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
565
10

Neurons for hunger and thirst transmit a negative-valence teaching signal.
J Nicholas Betley, Shengjin Xu, Zhen Fang Huang Cao, Rong Gong, Christopher J Magnus, Yang Yu, Scott M Sternson. Nature 2015
307
10

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
10

SIMA: Python software for analysis of dynamic fluorescence imaging data.
Patrick Kaifosh, Jeffrey D Zaremba, Nathan B Danielson, Attila Losonczy. Front Neuroinform 2014
74
12

Fast high-resolution miniature two-photon microscopy for brain imaging in freely behaving mice.
Weijian Zong, Runlong Wu, Mingli Li, Yanhui Hu, Yijun Li, Jinghang Li, Hao Rong, Haitao Wu, Yangyang Xu, Yang Lu,[...]. Nat Methods 2017
137
9

Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines.
Nicholas A Steinmetz, Christina Buetfering, Jerome Lecoq, Christian R Lee, Andrew J Peters, Elina A K Jacobs, Philip Coen, Douglas R Ollerenshaw, Matthew T Valley, Saskia E J de Vries,[...]. eNeuro 2017
89
10

NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.
Eftychios A Pnevmatikakis, Andrea Giovannucci. J Neurosci Methods 2017
148
9

In vivo multiphoton microscopy of deep brain tissue.
Michael J Levene, Daniel A Dombeck, Karl A Kasischke, Raymond P Molloy, Watt W Webb. J Neurophysiol 2004
258
8

Simultaneous cellular-resolution optical perturbation and imaging of place cell firing fields.
John Peter Rickgauer, Karl Deisseroth, David W Tank. Nat Neurosci 2014
173
8


Cellular level brain imaging in behaving mammals: an engineering approach.
Elizabeth J O Hamel, Benjamin F Grewe, Jones G Parker, Mark J Schnitzer. Neuron 2015
84
9

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
701
8


A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
8


The central amygdala controls learning in the lateral amygdala.
Kai Yu, Sandra Ahrens, Xian Zhang, Hillary Schiff, Charu Ramakrishnan, Lief Fenno, Karl Deisseroth, Fei Zhao, Min-Hua Luo, Ling Gong,[...]. Nat Neurosci 2017
82
9

Spatially Compact Neural Clusters in the Dorsal Striatum Encode Locomotion Relevant Information.
Giovanni Barbera, Bo Liang, Lifeng Zhang, Charles R Gerfen, Eugenio Culurciello, Rong Chen, Yun Li, Da-Ting Lin. Neuron 2016
114
8

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
8

Simultaneous Optogenetics and Cellular Resolution Calcium Imaging During Active Behavior Using a Miniaturized Microscope.
Alice M Stamatakis, Mike J Schachter, Srishti Gulati, Kevin T Zitelli, Sam Malanowski, Arash Tajik, Christopher Fritz, Mark Trulson, Stephani L Otte. Front Neurosci 2018
27
29

CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
101
8

Functional imaging of hippocampal place cells at cellular resolution during virtual navigation.
Daniel A Dombeck, Christopher D Harvey, Lin Tian, Loren L Looger, David W Tank. Nat Neurosci 2010
394
7

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
466
7

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.
Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, Karel Svoboda. Elife 2016
208
7

Deep tissue two-photon microscopy.
Fritjof Helmchen, Winfried Denk. Nat Methods 2005
7

Distinct Contribution of Adult-Born Hippocampal Granule Cells to Context Encoding.
Nathan B Danielson, Patrick Kaifosh, Jeffrey D Zaremba, Matthew Lovett-Barron, Joseph Tsai, Christine A Denny, Elizabeth M Balough, Alexander R Goldberg, Liam J Drew, René Hen,[...]. Neuron 2016
170
7

Multiphoton endoscopy.
Juergen C Jung, Mark J Schnitzer. Opt Lett 2003
168
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.