A citation-based method for searching scientific literature

Xiangrui Li, Paul S Morgan, John Ashburner, Jolinda Smith, Christopher Rorden. J Neurosci Methods 2016
Times Cited: 255







List of co-cited articles
437 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


FSL.
Mark Jenkinson, Christian F Beckmann, Timothy E J Behrens, Mark W Woolrich, Stephen M Smith. Neuroimage 2012
33

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.
Krzysztof J Gorgolewski, Tibor Auer, Vince D Calhoun, R Cameron Craddock, Samir Das, Eugene P Duff, Guillaume Flandin, Satrajit S Ghosh, Tristan Glatard, Yaroslav O Halchenko,[...]. Sci Data 2016
424
21


Advances in functional and structural MR image analysis and implementation as FSL.
Stephen M Smith, Mark Jenkinson, Mark W Woolrich, Christian F Beckmann, Timothy E J Behrens, Heidi Johansen-Berg, Peter R Bannister, Marilena De Luca, Ivana Drobnjak, David E Flitney,[...]. Neuroimage 2004
17

User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability.
Paul A Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C Gee, Guido Gerig. Neuroimage 2006
16

N4ITK: improved N3 bias correction.
Nicholas J Tustison, Brian B Avants, Philip A Cook, Yuanjie Zheng, Alexander Egan, Paul A Yushkevich, James C Gee. IEEE Trans Med Imaging 2010
12



MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites.
Oscar Esteban, Daniel Birman, Marie Schaer, Oluwasanmi O Koyejo, Russell A Poldrack, Krzysztof J Gorgolewski. PLoS One 2017
218
10

Fast robust automated brain extraction.
Stephen M Smith. Hum Brain Mapp 2002
10


FreeSurfer.
Bruce Fischl. Neuroimage 2012
10

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in python.
Krzysztof Gorgolewski, Christopher D Burns, Cindee Madison, Dav Clark, Yaroslav O Halchenko, Michael L Waskom, Satrajit S Ghosh. Front Neuroinform 2011
631
9



Improved optimization for the robust and accurate linear registration and motion correction of brain images.
Mark Jenkinson, Peter Bannister, Michael Brady, Stephen Smith. Neuroimage 2002
9

A reproducible evaluation of ANTs similarity metric performance in brain image registration.
Brian B Avants, Nicholas J Tustison, Gang Song, Philip A Cook, Arno Klein, James C Gee. Neuroimage 2011
8

An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest.
Rahul S Desikan, Florent Ségonne, Bruce Fischl, Brian T Quinn, Bradford C Dickerson, Deborah Blacker, Randy L Buckner, Anders M Dale, R Paul Maguire, Bradley T Hyman,[...]. Neuroimage 2006
8


Machine learning for neuroimaging with scikit-learn.
Alexandre Abraham, Fabian Pedregosa, Michael Eickenberg, Philippe Gervais, Andreas Mueller, Jean Kossaifi, Alexandre Gramfort, Bertrand Thirion, Gaël Varoquaux. Front Neuroinform 2014
510
8

fMRIPrep: a robust preprocessing pipeline for functional MRI.
Oscar Esteban, Christopher J Markiewicz, Ross W Blair, Craig A Moodie, A Ilkay Isik, Asier Erramuzpe, James D Kent, Mathias Goncalves, Elizabeth DuPre, Madeleine Snyder,[...]. Nat Methods 2019
561
8

MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation.
J-Donald Tournier, Robert Smith, David Raffelt, Rami Tabbara, Thijs Dhollander, Maximilian Pietsch, Daan Christiaens, Ben Jeurissen, Chun-Hung Yeh, Alan Connelly. Neuroimage 2019
552
7

The WU-Minn Human Connectome Project: an overview.
David C Van Essen, Stephen M Smith, Deanna M Barch, Timothy E J Behrens, Essa Yacoub, Kamil Ugurbil. Neuroimage 2013
7

A component based noise correction method (CompCor) for BOLD and perfusion based fMRI.
Yashar Behzadi, Khaled Restom, Joy Liau, Thomas T Liu. Neuroimage 2007
6

Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data.
Stephen M Smith, Mark Jenkinson, Heidi Johansen-Berg, Daniel Rueckert, Thomas E Nichols, Clare E Mackay, Kate E Watkins, Olga Ciccarelli, M Zaheer Cader, Paul M Matthews,[...]. Neuroimage 2006
6

Bayesian analysis of neuroimaging data in FSL.
Mark W Woolrich, Saad Jbabdi, Brian Patenaude, Michael Chappell, Salima Makni, Timothy Behrens, Christian Beckmann, Mark Jenkinson, Stephen M Smith. Neuroimage 2009
6

Radiomics: Images Are More than Pictures, They Are Data.
Robert J Gillies, Paul E Kinahan, Hedvig Hricak. Radiology 2016
6

Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion.
Jonathan D Power, Kelly A Barnes, Abraham Z Snyder, Bradley L Schlaggar, Steven E Petersen. Neuroimage 2012
6

ICA-AROMA: A robust ICA-based strategy for removing motion artifacts from fMRI data.
Raimon H R Pruim, Maarten Mennes, Daan van Rooij, Alberto Llera, Jan K Buitelaar, Christian F Beckmann. Neuroimage 2015
675
6

Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank.
Fidel Alfaro-Almagro, Mark Jenkinson, Neal K Bangerter, Jesper L R Andersson, Ludovica Griffanti, Gwenaëlle Douaud, Stamatios N Sotiropoulos, Saad Jbabdi, Moises Hernandez-Fernandez, Emmanuel Vallee,[...]. Neuroimage 2018
332
6

Computational Radiomics System to Decode the Radiographic Phenotype.
Joost J M van Griethuysen, Andriy Fedorov, Chintan Parmar, Ahmed Hosny, Nicole Aucoin, Vivek Narayan, Regina G H Beets-Tan, Jean-Christophe Fillion-Robin, Steve Pieper, Hugo J W L Aerts. Cancer Res 2017
6

The minimal preprocessing pipelines for the Human Connectome Project.
Matthew F Glasser, Stamatios N Sotiropoulos, J Anthony Wilson, Timothy S Coalson, Bruce Fischl, Jesper L Andersson, Junqian Xu, Saad Jbabdi, Matthew Webster, Jonathan R Polimeni,[...]. Neuroimage 2013
6

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.
Krzysztof J Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capotă, M Mallar Chakravarty, Nathan W Churchill, Alexander Li Cohen, R Cameron Craddock, Gabriel A Devenyi,[...]. PLoS Comput Biol 2017
109
6

Temporal autocorrelation in univariate linear modeling of FMRI data.
M W Woolrich, B D Ripley, M Brady, S M Smith. Neuroimage 2001
5

Symmetric atlasing and model based segmentation: an application to the hippocampus in older adults.
Günther Grabner, Andrew L Janke, Marc M Budge, David Smith, Jens Pruessner, D Louis Collins. Med Image Comput Comput Assist Interv 2006
296
5

Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.
Bruce Fischl, David H Salat, Evelina Busa, Marilyn Albert, Megan Dieterich, Christian Haselgrove, Andre van der Kouwe, Ron Killiany, David Kennedy, Shuna Klaveness,[...]. Neuron 2002
5


Permutation inference for the general linear model.
Anderson M Winkler, Gerard R Ridgway, Matthew A Webster, Stephen M Smith, Thomas E Nichols. Neuroimage 2014
5

Methods to detect, characterize, and remove motion artifact in resting state fMRI.
Jonathan D Power, Anish Mitra, Timothy O Laumann, Abraham Z Snyder, Bradley L Schlaggar, Steven E Petersen. Neuroimage 2014
5


A multi-modal parcellation of human cerebral cortex.
Matthew F Glasser, Timothy S Coalson, Emma C Robinson, Carl D Hacker, John Harwell, Essa Yacoub, Kamil Ugurbil, Jesper Andersson, Christian F Beckmann, Mark Jenkinson,[...]. Nature 2016
5

The organization of the human cerebral cortex estimated by intrinsic functional connectivity.
B T Thomas Yeo, Fenna M Krienen, Jorge Sepulcre, Mert R Sabuncu, Danial Lashkari, Marisa Hollinshead, Joshua L Roffman, Jordan W Smoller, Lilla Zöllei, Jonathan R Polimeni,[...]. J Neurophysiol 2011
5

Automatic denoising of functional MRI data: combining independent component analysis and hierarchical fusion of classifiers.
Gholamreza Salimi-Khorshidi, Gwenaëlle Douaud, Christian F Beckmann, Matthew F Glasser, Ludovica Griffanti, Stephen M Smith. Neuroimage 2014
856
4

Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?
T E J Behrens, H Johansen Berg, S Jbabdi, M F S Rushworth, M W Woolrich. Neuroimage 2007
4


Automatically parcellating the human cerebral cortex.
Bruce Fischl, André van der Kouwe, Christophe Destrieux, Eric Halgren, Florent Ségonne, David H Salat, Evelina Busa, Larry J Seidman, Jill Goldstein, David Kennedy,[...]. Cereb Cortex 2004
4

Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction.
Matteo Bastiani, Michiel Cottaar, Sean P Fitzgibbon, Sana Suri, Fidel Alfaro-Almagro, Stamatios N Sotiropoulos, Saad Jbabdi, Jesper L R Andersson. Neuroimage 2019
72
5

Gibbs-ringing artifact removal based on local subvoxel-shifts.
Elias Kellner, Bibek Dhital, Valerij G Kiselev, Marco Reisert. Magn Reson Med 2016
425
4

Denoising of diffusion MRI using random matrix theory.
Jelle Veraart, Dmitry S Novikov, Daan Christiaens, Benjamin Ades-Aron, Jan Sijbers, Els Fieremans. Neuroimage 2016
558
4

A technique for the deidentification of structural brain MR images.
Amanda Bischoff-Grethe, I Burak Ozyurt, Evelina Busa, Brian T Quinn, Christine Fennema-Notestine, Camellia P Clark, Shaunna Morris, Mark W Bondi, Terry L Jernigan, Anders M Dale,[...]. Hum Brain Mapp 2007
67
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.