A citation-based method for searching scientific literature

Sheeba Rasheedi, Ming-Chieh Shun, Erik Serrao, Gregory A Sowd, Juan Qian, Caili Hao, Twishasri Dasgupta, Alan N Engelman, Jacek Skowronski. J Biol Chem 2016
Times Cited: 34







List of co-cited articles
648 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A critical role for alternative polyadenylation factor CPSF6 in targeting HIV-1 integration to transcriptionally active chromatin.
Gregory A Sowd, Erik Serrao, Hao Wang, Weifeng Wang, Hind J Fadel, Eric M Poeschla, Alan N Engelman. Proc Natl Acad Sci U S A 2016
125
82

Flexible use of nuclear import pathways by HIV-1.
KyeongEun Lee, Zandrea Ambrose, Thomas D Martin, Ilker Oztop, Alok Mulky, John G Julias, Nick Vandegraaff, Joerg G Baumann, Rui Wang, Wendy Yuen,[...]. Cell Host Microbe 2010
302
73

HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency.
Torsten Schaller, Karen E Ocwieja, Jane Rasaiyaah, Amanda J Price, Troy L Brady, Shoshannah L Roth, Stéphane Hué, Adam J Fletcher, KyeongEun Lee, Vineet N KewalRamani,[...]. PLoS Pathog 2011
316
64

CPSF6 defines a conserved capsid interface that modulates HIV-1 replication.
Amanda J Price, Adam J Fletcher, Torsten Schaller, Tom Elliott, KyeongEun Lee, Vineet N KewalRamani, Jason W Chin, Greg J Towers, Leo C James. PLoS Pathog 2012
163
61

Direct Visualization of HIV-1 Replication Intermediates Shows that Capsid and CPSF6 Modulate HIV-1 Intra-nuclear Invasion and Integration.
Christopher R Chin, Jill M Perreira, George Savidis, Jocelyn M Portmann, Aaron M Aker, Eric M Feeley, Miles C Smith, Abraham L Brass. Cell Rep 2015
92
58

HIV integration targeting: a pathway involving Transportin-3 and the nuclear pore protein RanBP2.
Karen E Ocwieja, Troy L Brady, Keshet Ronen, Alyssa Huegel, Shoshannah L Roth, Torsten Schaller, Leo C James, Greg J Towers, John A T Young, Sumit K Chanda,[...]. PLoS Pathog 2011
164
52

Structural basis of HIV-1 capsid recognition by PF74 and CPSF6.
Akash Bhattacharya, Steven L Alam, Thomas Fricke, Kaneil Zadrozny, Jaroslaw Sedzicki, Alexander B Taylor, Borries Demeler, Owen Pornillos, Barbie K Ganser-Pornillos, Felipe Diaz-Griffero,[...]. Proc Natl Acad Sci U S A 2014
140
47

HIV-1 integration in the human genome favors active genes and local hotspots.
Astrid R W Schröder, Paul Shinn, Huaming Chen, Charles Berry, Joseph R Ecker, Frederic Bushman. Cell 2002
47

Nuclear architecture dictates HIV-1 integration site selection.
Bruna Marini, Attila Kertesz-Farkas, Hashim Ali, Bojana Lucic, Kamil Lisek, Lara Manganaro, Sandor Pongor, Roberto Luzzati, Alessandra Recchia, Fulvio Mavilio,[...]. Nature 2015
188
47

Nup153 and Nup98 bind the HIV-1 core and contribute to the early steps of HIV-1 replication.
Francesca Di Nunzio, Thomas Fricke, Annarita Miccio, Jose Carlos Valle-Casuso, Patricio Perez, Philippe Souque, Ermanno Rizzi, Marco Severgnini, Fulvio Mavilio, Pierre Charneau,[...]. Virology 2013
99
47

HIV-1 capsid: the multifaceted key player in HIV-1 infection.
Edward M Campbell, Thomas J Hope. Nat Rev Microbiol 2015
215
44


Differential effects of human immunodeficiency virus type 1 capsid and cellular factors nucleoporin 153 and LEDGF/p75 on the efficiency and specificity of viral DNA integration.
Yasuhiro Koh, Xiaolin Wu, Andrea L Ferris, Kenneth A Matreyek, Steven J Smith, KyeongEun Lee, Vineet N KewalRamani, Stephen H Hughes, Alan Engelman. J Virol 2013
85
44

Capsid-CPSF6 Interaction Licenses Nuclear HIV-1 Trafficking to Sites of Viral DNA Integration.
Vasudevan Achuthan, Jill M Perreira, Gregory A Sowd, Maritza Puray-Chavez, William M McDougall, Adriana Paulucci-Holthauzen, Xiaolin Wu, Hind J Fadel, Eric M Poeschla, Asha S Multani,[...]. Cell Host Microbe 2018
78
44

Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication.
Renate König, Yingyao Zhou, Daniel Elleder, Tracy L Diamond, Ghislain M C Bonamy, Jeffrey T Irelan, Chih-Yuan Chiang, Buu P Tu, Paul D De Jesus, Caroline E Lilley,[...]. Cell 2008
719
38

Chromatin organization at the nuclear pore favours HIV replication.
Mickaël Lelek, Nicoletta Casartelli, Danilo Pellin, Ermanno Rizzi, Philippe Souque, Marco Severgnini, Clelia Di Serio, Thomas Fricke, Felipe Diaz-Griffero, Christophe Zimmer,[...]. Nat Commun 2015
83
38

A role for LEDGF/p75 in targeting HIV DNA integration.
Angela Ciuffi, Manuel Llano, Eric Poeschla, Christian Hoffmann, Jeremy Leipzig, Paul Shinn, Joseph R Ecker, Frederic Bushman. Nat Med 2005
442
38

Host cofactors and pharmacologic ligands share an essential interface in HIV-1 capsid that is lost upon disassembly.
Amanda J Price, David A Jacques, William A McEwan, Adam J Fletcher, Sebastian Essig, Jason W Chin, Upul D Halambage, Christopher Aiken, Leo C James. PLoS Pathog 2014
157
35

Quantitative microscopy of functional HIV post-entry complexes reveals association of replication with the viral capsid.
Ke Peng, Walter Muranyi, Bärbel Glass, Vibor Laketa, Stephen R Yant, Luong Tsai, Tomas Cihlar, Barbara Müller, Hans-Georg Kräusslich. Elife 2014
119
35

Identification of host proteins required for HIV infection through a functional genomic screen.
Abraham L Brass, Derek M Dykxhoorn, Yair Benita, Nan Yan, Alan Engelman, Ramnik J Xavier, Judy Lieberman, Stephen J Elledge. Science 2008
35

Human nucleoporins promote HIV-1 docking at the nuclear pore, nuclear import and integration.
Francesca Di Nunzio, Anne Danckaert, Thomas Fricke, Patricio Perez, Juliette Fernandez, Emmanuelle Perret, Pascal Roux, Spencer Shorte, Pierre Charneau, Felipe Diaz-Griffero,[...]. PLoS One 2012
109
35

Nuclear landscape of HIV-1 infection and integration.
Marina Lusic, Robert F Siliciano. Nat Rev Microbiol 2017
55
35

Human immunodeficiency virus type 1 Gag protein binds to cyclophilins A and B.
J Luban, K L Bossolt, E K Franke, G V Kalpana, S P Goff. Cell 1993
672
32


HIV-1 evades innate immune recognition through specific cofactor recruitment.
Jane Rasaiyaah, Choon Ping Tan, Adam J Fletcher, Amanda J Price, Caroline Blondeau, Laura Hilditch, David A Jacques, David L Selwood, Leo C James, Mahdad Noursadeghi,[...]. Nature 2013
295
32

HIV-1 integration landscape during latent and active infection.
Lillian B Cohn, Israel T Silva, Thiago Y Oliveira, Rafael A Rosales, Erica H Parrish, Gerald H Learn, Beatrice H Hahn, Julie L Czartoski, M Juliana McElrath, Clara Lehmann,[...]. Cell 2015
254
32

HIV-1 pre-integration complexes selectively target decondensed chromatin in the nuclear periphery.
Alberto Albanese, Daniele Arosio, Mariaelena Terreni, Anna Cereseto. PLoS One 2008
81
32

The ability of TNPO3-depleted cells to inhibit HIV-1 infection requires CPSF6.
Thomas Fricke, Jose Carlos Valle-Casuso, Tommy E White, Alberto Brandariz-Nuñez, William J Bosche, Natalia Reszka, Robert Gorelick, Felipe Diaz-Griffero. Retrovirology 2013
67
29


Transportin-SR2 imports HIV into the nucleus.
Frauke Christ, Wannes Thys, Jan De Rijck, Rik Gijsbers, Alberto Albanese, Daniele Arosio, Stephane Emiliani, Jean-Christophe Rain, Richard Benarous, Anna Cereseto,[...]. Curr Biol 2008
190
29

LEDGF/p75 functions downstream from preintegration complex formation to effect gene-specific HIV-1 integration.
Ming-Chieh Shun, Nidhanapati K Raghavendra, Nick Vandegraaff, Janet E Daigle, Siobhan Hughes, Paul Kellam, Peter Cherepanov, Alan Engelman. Genes Dev 2007
330
29

TNPO3 protects HIV-1 replication from CPSF6-mediated capsid stabilization in the host cell cytoplasm.
Alberto De Iaco, Federico Santoni, Anne Vannier, Michel Guipponi, Stylianos Antonarakis, Jeremy Luban. Retrovirology 2013
105
29

HIV-1 integrase forms stable tetramers and associates with LEDGF/p75 protein in human cells.
Peter Cherepanov, Goedele Maertens, Paul Proost, Bart Devreese, Jozef Van Beeumen, Yves Engelborghs, Erik De Clercq, Zeger Debyser. J Biol Chem 2003
506
29




HIV latency. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells.
F Maldarelli, X Wu, L Su, F R Simonetti, W Shao, S Hill, J Spindler, A L Ferris, J W Mellors, M F Kearney,[...]. Science 2014
486
26

Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy.
T W Chun, L Stuyver, S B Mizell, L A Ehler, J A Mican, M Baseler, A L Lloyd, M A Nowak, A S Fauci. Proc Natl Acad Sci U S A 1997
26

Latent infection of CD4+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy.
D Finzi, J Blankson, J D Siliciano, J B Margolick, K Chadwick, T Pierson, K Smith, J Lisziewicz, F Lori, C Flexner,[...]. Nat Med 1999
26

HIV latency. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection.
Thor A Wagner, Sherry McLaughlin, Kavita Garg, Charles Y K Cheung, Brendan B Larsen, Sheila Styrchak, Hannah C Huang, Paul T Edlefsen, James I Mullins, Lisa M Frenkel. Science 2014
390
26

Replication-competent noninduced proviruses in the latent reservoir increase barrier to HIV-1 cure.
Ya-Chi Ho, Liang Shan, Nina N Hosmane, Jeffrey Wang, Sarah B Laskey, Daniel I S Rosenbloom, Jun Lai, Joel N Blankson, Janet D Siliciano, Robert F Siliciano. Cell 2013
839
26

Single-cell imaging of HIV-1 provirus (SCIP).
Cristina Di Primio, Valentina Quercioli, Awatef Allouch, Rik Gijsbers, Frauke Christ, Zeger Debyser, Daniele Arosio, Anna Cereseto. Proc Natl Acad Sci U S A 2013
48
26

Capsid-CPSF6 Interaction Is Dispensable for HIV-1 Replication in Primary Cells but Is Selected during Virus Passage In Vivo.
Akatsuki Saito, Matthew S Henning, Erik Serrao, Brittany N Dubose, Samantha Teng, Jing Huang, Xiangming Li, Namiko Saito, Saumendra Prasad Roy, Mohammad Adnan Siddiqui,[...]. J Virol 2016
38
26


Capsid-Dependent Host Factors in HIV-1 Infection.
Masahiro Yamashita, Alan N Engelman. Trends Microbiol 2017
61
26


HIV Restriction Factors and Mechanisms of Evasion.
Michael H Malim, Paul D Bieniasz. Cold Spring Harb Perspect Med 2012
311
23

HIV capsid is a tractable target for small molecule therapeutic intervention.
Wade S Blair, Chris Pickford, Stephen L Irving, David G Brown, Marie Anderson, Richard Bazin, Joan Cao, Giuseppe Ciaramella, Jason Isaacson, Lynn Jackson,[...]. PLoS Pathog 2010
184
23


Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication.
Brett M Forshey, Uta von Schwedler, Wesley I Sundquist, Christopher Aiken. J Virol 2002
384
23


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.