A citation-based method for searching scientific literature

Roberta Rocca, Giosuè Costa, Anna Artese, Lucia Parrotta, Francesco Ortuso, Elias Maccioni, Odra Pinato, Maria Laura Greco, Claudia Sissi, Stefano Alcaro, Simona Distinto, Federica Moraca. ChemMedChem 2016
Times Cited: 13







List of co-cited articles
78 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Identification and characterization of new DNA G-quadruplex binders selected by a combination of ligand and structure-based virtual screening approaches.
Stefano Alcaro, Caterina Musetti, Simona Distinto, Margherita Casatti, Giuseppe Zagotto, Anna Artese, Lucia Parrotta, Federica Moraca, Giosuè Costa, Francesco Ortuso,[...]. J Med Chem 2013
63
53

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
46

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?
Shankar Balasubramanian, Laurence H Hurley, Stephen Neidle. Nat Rev Drug Discov 2011
38


Identification of G-quadruplex DNA/RNA binders: Structure-based virtual screening and biophysical characterization.
Roberta Rocca, Federica Moraca, Giosuè Costa, Matteo Nadai, Matteo Scalabrin, Carmine Talarico, Simona Distinto, Elias Maccioni, Francesco Ortuso, Anna Artese,[...]. Biochim Biophys Acta Gen Subj 2017
21
38



Toward the Development of Specific G-Quadruplex Binders: Synthesis, Biophysical, and Biological Studies of New Hydrazone Derivatives.
Jussara Amato, Rita Morigi, Bruno Pagano, Alessia Pagano, Stephan Ohnmacht, Alessio De Magis, Yee-Peng Tiang, Giovanni Capranico, Alessandra Locatelli, Alessandra Graziadio,[...]. J Med Chem 2016
34
30

Exploring the chemical space of G-quadruplex binders: discovery of a novel chemotype targeting the human telomeric sequence.
Francesco Saverio Di Leva, Pasquale Zizza, Chiara Cingolani, Carmen D'Angelo, Bruno Pagano, Jussara Amato, Erica Salvati, Claudia Sissi, Odra Pinato, Luciana Marinelli,[...]. J Med Chem 2013
40
30

Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers.
Alberto Pérez, Iván Marchán, Daniel Svozil, Jiri Sponer, Thomas E Cheatham, Charles A Laughton, Modesto Orozco. Biophys J 2007
30


Structure-based virtual screening of novel natural alkaloid derivatives as potential binders of h-telo and c-myc DNA G-quadruplex conformations.
Roberta Rocca, Federica Moraca, Giosuè Costa, Stefano Alcaro, Simona Distinto, Elias Maccioni, Francesco Ortuso, Anna Artese, Lucia Parrotta. Molecules 2014
18
30

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
30

Ligand binding to telomeric G-quadruplex DNA investigated by funnel-metadynamics simulations.
Federica Moraca, Jussara Amato, Francesco Ortuso, Anna Artese, Bruno Pagano, Ettore Novellino, Stefano Alcaro, Michele Parrinello, Vittorio Limongelli. Proc Natl Acad Sci U S A 2017
60
30

In Silico Identification of Piperidinyl-amine Derivatives as Novel Dual Binders of Oncogene c-myc/c-Kit G-quadruplexes.
Roberta Rocca, Federica Moraca, Giosuè Costa, Carmine Talarico, Francesco Ortuso, Silvia Da Ros, Giulia Nicoletto, Claudia Sissi, Stefano Alcaro, Anna Artese. ACS Med Chem Lett 2018
13
30

The G-triplex DNA.
Vittorio Limongelli, Stefano De Tito, Linda Cerofolini, Marco Fragai, Bruno Pagano, Roberta Trotta, Sandro Cosconati, Luciana Marinelli, Ettore Novellino, Ivano Bertini,[...]. Angew Chem Int Ed Engl 2013
102
23


AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility.
Garrett M Morris, Ruth Huey, William Lindstrom, Michel F Sanner, Richard K Belew, David S Goodsell, Arthur J Olson. J Comput Chem 2009
23

Development and testing of a general amber force field.
Junmei Wang, Romain M Wolf, James W Caldwell, Peter A Kollman, David A Case. J Comput Chem 2004
23

Looking for efficient G-quadruplex ligands: evidence for selective stabilizing properties and telomere damage by drug-like molecules.
Bruno Pagano, Jussara Amato, Nunzia Iaccarino, Chiara Cingolani, Pasquale Zizza, Annamaria Biroccio, Ettore Novellino, Antonio Randazzo. ChemMedChem 2015
34
23


Targeting unimolecular G-quadruplex nucleic acids: a new paradigm for the drug discovery?
Lucia Parrotta, Francesco Ortuso, Federica Moraca, Roberta Rocca, Giosuè Costa, Stefano Alcaro, Anna Artese. Expert Opin Drug Discov 2014
20
23

Inhibition of telomerase by G-quartet DNA structures.
A M Zahler, J R Williamson, T R Cech, D M Prescott. Nature 1991
878
23

Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells.
Giulia Biffi, Marco Di Antonio, David Tannahill, Shankar Balasubramanian. Nat Chem 2014
336
23

Toward the design of new DNA G-quadruplex ligands through rational analysis of polymorphism and binding data.
Anna Artese, Giosuè Costa, Simona Distinto, Federica Moraca, Francesco Ortuso, Lucia Parrotta, Stefano Alcaro. Eur J Med Chem 2013
18
23

Mechanistic insight into ligand binding to G-quadruplex DNA.
Francesco Saverio Di Leva, Ettore Novellino, Andrea Cavalli, Michele Parrinello, Vittorio Limongelli. Nucleic Acids Res 2014
54
23



Small molecules targeting c-Myc oncogene: promising anti-cancer therapeutics.
Bing-Jia Chen, Yan-Ling Wu, Yoshimasa Tanaka, Wen Zhang. Int J Biol Sci 2014
144
23

Identification of a selective G-quadruplex DNA binder using a multistep virtual screening approach.
Jin-Qiang Hou, Shuo-Bin Chen, Li-Peng Zan, Tian-Miao Ou, Jia-Heng Tan, Leonard G Luyt, Zhi-Shu Huang. Chem Commun (Camb) 2015
16
23

Stabilization of G-quadruplex DNA and down-regulation of oncogene c-myc by quindoline derivatives.
Tian-Miao Ou, Yu-Jing Lu, Chi Zhang, Zhi-Shu Huang, Xiao-Dong Wang, Jia-Heng Tan, Yuan Chen, Dik-Lung Ma, Kwok-Yin Wong, Johnny Cheuk-On Tang,[...]. J Med Chem 2007
213
23

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
15

Circular dichroism of quadruplex structures.
Antonio Randazzo, Gian Piero Spada, Mateus Webba da Silva. Top Curr Chem 2013
127
15

Flexibility and structural conservation in a c-KIT G-quadruplex.
Dengguo Wei, Jarmila Husby, Stephen Neidle. Nucleic Acids Res 2015
42
15

Telomeric G-quadruplexes are a substrate and site of localization for human telomerase.
Aaron L Moye, Karina C Porter, Scott B Cohen, Tram Phan, Katherine G Zyner, Natsuki Sasaki, George O Lovrecz, Jennifer L Beck, Tracy M Bryan. Nat Commun 2015
127
15


G-quadruplexes from human telomeric DNA: how many conformations in PEG containing solutions?
Luigi Petraccone, Anna Malafronte, Jussara Amato, Concetta Giancola. J Phys Chem B 2012
35
15

G-triplex structure and formation propensity.
Linda Cerofolini, Jussara Amato, Andrea Giachetti, Vittorio Limongelli, Ettore Novellino, Michele Parrinello, Marco Fragai, Antonio Randazzo, Claudio Luchinat. Nucleic Acids Res 2014
47
15


Directory of useful decoys, enhanced (DUD-E): better ligands and decoys for better benchmarking.
Michael M Mysinger, Michael Carchia, John J Irwin, Brian K Shoichet. J Med Chem 2012
797
15

Crystal structure of parallel quadruplexes from human telomeric DNA.
Gary N Parkinson, Michael P H Lee, Stephen Neidle. Nature 2002
15

Selectivity in small molecule binding to human telomeric RNA and DNA quadruplexes.
Gavin Collie, Anthony P Reszka, Shozeb M Haider, Valérie Gabelica, Gary N Parkinson, Stephen Neidle. Chem Commun (Camb) 2009
52
15

Structural basis of DNA quadruplex recognition by an acridine drug.
Nancy H Campbell, Gary N Parkinson, Anthony P Reszka, Stephen Neidle. J Am Chem Soc 2008
216
15

Anticancer activity of CX-3543: a direct inhibitor of rRNA biogenesis.
Denis Drygin, Adam Siddiqui-Jain, Sean O'Brien, Michael Schwaebe, Amy Lin, Josh Bliesath, Caroline B Ho, Chris Proffitt, Katy Trent, Jeffrey P Whitten,[...]. Cancer Res 2009
333
15


Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
15

Automatic atom type and bond type perception in molecular mechanical calculations.
Junmei Wang, Wei Wang, Peter A Kollman, David A Case. J Mol Graph Model 2006
15

Spectroscopic, molecular modeling, and NMR-spectroscopic investigation of the binding mode of the natural alkaloids berberine and sanguinarine to human telomeric G-quadruplex DNA.
Irene Bessi, Carla Bazzicalupi, Christian Richter, Hendrik R A Jonker, Krishna Saxena, Claudia Sissi, Matteo Chioccioli, Sara Bianco, Anna Rita Bilia, Harald Schwalbe,[...]. ACS Chem Biol 2012
68
15


GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.
Sander Pronk, Szilárd Páll, Roland Schulz, Per Larsson, Pär Bjelkmar, Rossen Apostolov, Michael R Shirts, Jeremy C Smith, Peter M Kasson, David van der Spoel,[...]. Bioinformatics 2013
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.