A citation-based method for searching scientific literature

Kelly M Bakulski, Jason I Feinberg, Shan V Andrews, Jack Yang, Shannon Brown, Stephanie L McKenney, Frank Witter, Jeremy Walston, Andrew P Feinberg, M Daniele Fallin. Epigenetics 2016
Times Cited: 176







List of co-cited articles
685 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
52

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
47

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray.
Yi-an Chen, Mathieu Lemire, Sanaa Choufani, Darci T Butcher, Daria Grafodatskaya, Brent W Zanke, Steven Gallinger, Thomas J Hudson, Rosanna Weksberg. Epigenetics 2013
877
26

DNA Methylation in Newborns and Maternal Smoking in Pregnancy: Genome-wide Consortium Meta-analysis.
Bonnie R Joubert, Janine F Felix, Paul Yousefi, Kelly M Bakulski, Allan C Just, Carrie Breton, Sarah E Reese, Christina A Markunas, Rebecca C Richmond, Cheng-Jian Xu,[...]. Am J Hum Genet 2016
437
25

Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility.
Lovisa E Reinius, Nathalie Acevedo, Maaike Joerink, Göran Pershagen, Sven-Erik Dahlén, Dario Greco, Cilla Söderhäll, Annika Scheynius, Juha Kere. PLoS One 2012
655
24

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A Kibbe, Lifang Hou, Simon M Lin. BMC Bioinformatics 2010
20

De novo identification of differentially methylated regions in the human genome.
Timothy J Peters, Michael J Buckley, Aaron L Statham, Ruth Pidsley, Katherine Samaras, Reginald V Lord, Susan J Clark, Peter L Molloy. Epigenetics Chromatin 2015
412
18

missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.
Belinda Phipson, Jovana Maksimovic, Alicia Oshlack. Bioinformatics 2016
291
18

Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
16

High density DNA methylation array with single CpG site resolution.
Marina Bibikova, Bret Barnes, Chan Tsan, Vincent Ho, Brandy Klotzle, Jennie M Le, David Delano, Lu Zhang, Gary P Schroth, Kevin L Gunderson,[...]. Genomics 2011
16

Cohort Profile: Pregnancy And Childhood Epigenetics (PACE) Consortium.
Janine F Felix, Bonnie R Joubert, Andrea A Baccarelli, Gemma C Sharp, Catarina Almqvist, Isabella Annesi-Maesano, Hasan Arshad, Nour Baïz, Marian J Bakermans-Kranenburg, Kelly M Bakulski,[...]. Int J Epidemiol 2018
60
25

Cell type specific DNA methylation in cord blood: A 450K-reference data set and cell count-based validation of estimated cell type composition.
Kristina Gervin, Christian Magnus Page, Hans Christian D Aass, Michelle A Jansen, Heidi Elisabeth Fjeldstad, Bettina Kulle Andreassen, Liesbeth Duijts, Joyce B van Meurs, Menno C van Zelm, Vincent W Jaddoe,[...]. Epigenetics 2016
45
33

The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey. Bioinformatics 2012
15

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
15

Maternal plasma folate impacts differential DNA methylation in an epigenome-wide meta-analysis of newborns.
Bonnie R Joubert, Herman T den Dekker, Janine F Felix, Jon Bohlin, Symen Ligthart, Emma Beckett, Henning Tiemeier, Joyce B van Meurs, Andre G Uitterlinden, Albert Hofman,[...]. Nat Commun 2016
145
14

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.
Ruth Pidsley, Elena Zotenko, Timothy J Peters, Mitchell G Lawrence, Gail P Risbridger, Peter Molloy, Susan Van Djik, Beverly Muhlhausler, Clare Stirzaker, Susan J Clark. Genome Biol 2016
457
14

Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight.
Leanne K Küpers, Claire Monnereau, Gemma C Sharp, Paul Yousefi, Lucas A Salas, Akram Ghantous, Christian M Page, Sarah E Reese, Allen J Wilcox, Darina Czamara,[...]. Nat Commun 2019
70
20

Maternal BMI at the start of pregnancy and offspring epigenome-wide DNA methylation: findings from the pregnancy and childhood epigenetics (PACE) consortium.
Gemma C Sharp, Lucas A Salas, Claire Monnereau, Catherine Allard, Paul Yousefi, Todd M Everson, Jon Bohlin, Zongli Xu, Rae-Chi Huang, Sarah E Reese,[...]. Hum Mol Genet 2017
107
13

Cohort Profile: the INMA--INfancia y Medio Ambiente--(Environment and Childhood) Project.
Mònica Guxens, Ferran Ballester, Mercedes Espada, Mariana F Fernández, Joan O Grimalt, Jesús Ibarluzea, Nicolás Olea, Marisa Rebagliato, Adonina Tardón, Maties Torrent,[...]. Int J Epidemiol 2012
382
12

Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values.
Brent S Pedersen, David A Schwartz, Ivana V Yang, Katerina J Kechris. Bioinformatics 2012
202
12

METAL: fast and efficient meta-analysis of genomewide association scans.
Cristen J Willer, Yun Li, Gonçalo R Abecasis. Bioinformatics 2010
12

Functional normalization of 450k methylation array data improves replication in large cancer studies.
Jean-Philippe Fortin, Aurélie Labbe, Mathieu Lemire, Brent W Zanke, Thomas J Hudson, Elana J Fertig, Celia Mt Greenwood, Kasper D Hansen. Genome Biol 2014
398
12


Systematic identification of genetic influences on methylation across the human life course.
Tom R Gaunt, Hashem A Shihab, Gibran Hemani, Josine L Min, Geoff Woodward, Oliver Lyttleton, Jie Zheng, Aparna Duggirala, Wendy L McArdle, Karen Ho,[...]. Genome Biol 2016
290
11

Longitudinal analysis of DNA methylation associated with birth weight and gestational age.
Andrew J Simpkin, Matthew Suderman, Tom R Gaunt, Oliver Lyttleton, Wendy L McArdle, Susan M Ring, Kate Tilling, George Davey Smith, Caroline L Relton. Hum Mol Genet 2015
83
13


The Generation R Study: design and cohort update 2017.
Marjolein N Kooijman, Claudia J Kruithof, Cornelia M van Duijn, Liesbeth Duijts, Oscar H Franco, Marinus H van IJzendoorn, Johan C de Jongste, Caroline C W Klaver, Aad van der Lugt, Johan P Mackenbach,[...]. Eur J Epidemiol 2016
393
11

Cohort Profile: the Avon Longitudinal Study of Parents and Children: ALSPAC mothers cohort.
Abigail Fraser, Corrie Macdonald-Wallis, Kate Tilling, Andy Boyd, Jean Golding, George Davey Smith, John Henderson, John Macleod, Lynn Molloy, Andy Ness,[...]. Int J Epidemiol 2013
11

450K epigenome-wide scan identifies differential DNA methylation in newborns related to maternal smoking during pregnancy.
Bonnie R Joubert, Siri E Håberg, Roy M Nilsen, Xuting Wang, Stein E Vollset, Susan K Murphy, Zhiqing Huang, Cathrine Hoyo, Øivind Midttun, Lea A Cupul-Uicab,[...]. Environ Health Perspect 2012
486
10

Prediction of gestational age based on genome-wide differentially methylated regions.
J Bohlin, S E Håberg, P Magnus, S E Reese, H K Gjessing, M C Magnus, C L Parr, C M Page, S J London, W Nystad. Genome Biol 2016
61
16

Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi.
Jean-Philippe Fortin, Timothy J Triche, Kasper D Hansen. Bioinformatics 2017
268
10

Low-level processing of Illumina Infinium DNA Methylation BeadArrays.
Timothy J Triche, Daniel J Weisenberger, David Van Den Berg, Peter W Laird, Kimberly D Siegmund. Nucleic Acids Res 2013
365
10

Cohort profile: project viva.
Emily Oken, Andrea A Baccarelli, Diane R Gold, Ken P Kleinman, Augusto A Litonjua, Dawn De Meo, Janet W Rich-Edwards, Sheryl L Rifas-Shiman, Sharon Sagiv, Elsie M Taveras,[...]. Int J Epidemiol 2015
207
10

Cohort Profile: the 'children of the 90s'--the index offspring of the Avon Longitudinal Study of Parents and Children.
Andy Boyd, Jean Golding, John Macleod, Debbie A Lawlor, Abigail Fraser, John Henderson, Lynn Molloy, Andy Ness, Susan Ring, George Davey Smith. Int J Epidemiol 2013
10

BECon: a tool for interpreting DNA methylation findings from blood in the context of brain.
R D Edgar, M J Jones, M J Meaney, G Turecki, M S Kobor. Transl Psychiatry 2017
108
9

Epigenome-Wide Meta-Analysis of Methylation in Children Related to Prenatal NO2 Air Pollution Exposure.
Olena Gruzieva, Cheng-Jian Xu, Carrie V Breton, Isabella Annesi-Maesano, Josep M Antó, Charles Auffray, Stéphane Ballereau, Tom Bellander, Jean Bousquet, Mariona Bustamante,[...]. Environ Health Perspect 2017
124
9

An epigenetic clock for gestational age at birth based on blood methylation data.
Anna K Knight, Jeffrey M Craig, Christiane Theda, Marie Bækvad-Hansen, Jonas Bybjerg-Grauholm, Christine S Hansen, Mads V Hollegaard, David M Hougaard, Preben B Mortensen, Shantel M Weinsheimer,[...]. Genome Biol 2016
103
9

Recommendations for the design and analysis of epigenome-wide association studies.
Karin B Michels, Alexandra M Binder, Sarah Dedeurwaerder, Charles B Epstein, John M Greally, Ivo Gut, E Andres Houseman, Benedetta Izzi, Karl T Kelsey, Alexander Meissner,[...]. Nat Methods 2013
237
9

A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies.
Benjamin Lehne, Alexander W Drong, Marie Loh, Weihua Zhang, William R Scott, Sian-Tsung Tan, Uzma Afzal, James Scott, Marjo-Riitta Jarvelin, Paul Elliott,[...]. Genome Biol 2015
175
9


Data Resource Profile: Accessible Resource for Integrated Epigenomic Studies (ARIES).
Caroline L Relton, Tom Gaunt, Wendy McArdle, Karen Ho, Aparna Duggirala, Hashem Shihab, Geoff Woodward, Oliver Lyttleton, David M Evans, Wolf Reik,[...]. Int J Epidemiol 2015
135
9



A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.
Andrew E Teschendorff, Francesco Marabita, Matthias Lechner, Thomas Bartlett, Jesper Tegner, David Gomez-Cabrero, Stephan Beck. Bioinformatics 2013
813
8

Sex differences in DNA methylation assessed by 450 K BeadChip in newborns.
Paul Yousefi, Karen Huen, Veronica Davé, Lisa Barcellos, Brenda Eskenazi, Nina Holland. BMC Genomics 2015
91
8

Cohort Profile: Prediction and prevention of preeclampsia and intrauterine growth restriction (PREDO) study.
Polina Girchenko, Marius Lahti, Soile Tuovinen, Katri Savolainen, Jari Lahti, Elisabeth B Binder, Rebecca M Reynolds, Sonja Entringer, Claudia Buss, Pathik D Wadhwa,[...]. Int J Epidemiol 2017
46
17

Birth weight-for-gestational age is associated with DNA methylation at birth and in childhood.
Golareh Agha, Hanine Hajj, Sheryl L Rifas-Shiman, Allan C Just, Marie-France Hivert, Heather H Burris, Xihong Lin, Augusto A Litonjua, Emily Oken, Dawn L DeMeo,[...]. Clin Epigenetics 2016
42
16


DNA methylation mediates the effect of maternal smoking during pregnancy on birthweight of the offspring.
Leanne K Küpers, Xiaojing Xu, Soesma A Jankipersadsing, Ahmad Vaez, Sacha la Bastide-van Gemert, Salome Scholtens, Ilja M Nolte, Rebecca C Richmond, Caroline L Relton, Janine F Felix,[...]. Int J Epidemiol 2015
120
7

Nucleated red blood cells impact DNA methylation and expression analyses of cord blood hematopoietic cells.
Olivia M de Goede, Hamid R Razzaghian, E Magda Price, Meaghan J Jones, Michael S Kobor, Wendy P Robinson, Pascal M Lavoie. Clin Epigenetics 2015
38
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.