A citation-based method for searching scientific literature

Radhakrishnan Sabarinathan, Loris Mularoni, Jordi Deu-Pons, Abel Gonzalez-Perez, Núria López-Bigas. Nature 2016
Times Cited: 133







List of co-cited articles
883 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Differential DNA repair underlies mutation hotspots at active promoters in cancer genomes.
Dilmi Perera, Rebecca C Poulos, Anushi Shah, Dominik Beck, John E Pimanda, Jason W H Wong. Nature 2016
105
55

Signatures of mutational processes in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Samuel A J R Aparicio, Sam Behjati, Andrew V Biankin, Graham R Bignell, Niccolò Bolli, Ake Borg, Anne-Lise Børresen-Dale,[...]. Nature 2013
45

Mutational heterogeneity in cancer and the search for new cancer-associated genes.
Michael S Lawrence, Petar Stojanov, Paz Polak, Gregory V Kryukov, Kristian Cibulskis, Andrey Sivachenko, Scott L Carter, Chip Stewart, Craig H Mermel, Steven A Roberts,[...]. Nature 2013
37


Cell-of-origin chromatin organization shapes the mutational landscape of cancer.
Paz Polak, Rosa Karlić, Amnon Koren, Robert Thurman, Richard Sandstrom, Michael Lawrence, Alex Reynolds, Eric Rynes, Kristian Vlahoviček, John A Stamatoyannopoulos,[...]. Nature 2015
260
31


Highly recurrent TERT promoter mutations in human melanoma.
Franklin W Huang, Eran Hodis, Mary Jue Xu, Gregory V Kryukov, Lynda Chin, Levi A Garraway. Science 2013
25

CTCF/cohesin-binding sites are frequently mutated in cancer.
Riku Katainen, Kashyap Dave, Esa Pitkänen, Kimmo Palin, Teemu Kivioja, Niko Välimäki, Alexandra E Gylfe, Heikki Ristolainen, Ulrika A Hänninen, Tatiana Cajuso,[...]. Nat Genet 2015
219
23

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
23


Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair.
Paz Polak, Michael S Lawrence, Eric Haugen, Nina Stoletzki, Petar Stojanov, Robert E Thurman, Levi A Garraway, Sergei Mirkin, Gad Getz, John A Stamatoyannopoulos,[...]. Nat Biotechnol 2014
81
25

Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types.
Nils J Fredriksson, Lars Ny, Jonas A Nilsson, Erik Larsson. Nat Genet 2014
173
21

Genome-wide analysis of noncoding regulatory mutations in cancer.
Nils Weinhold, Anders Jacobsen, Nikolaus Schultz, Chris Sander, William Lee. Nat Genet 2014
300
19

TERT promoter mutations in familial and sporadic melanoma.
Susanne Horn, Adina Figl, P Sivaramakrishna Rachakonda, Christine Fischer, Antje Sucker, Andreas Gast, Stephanie Kadel, Iris Moll, Eduardo Nagore, Kari Hemminki,[...]. Science 2013
19

Recurrent somatic mutations in regulatory regions of human cancer genomes.
Collin Melton, Jason A Reuter, Damek V Spacek, Michael Snyder. Nat Genet 2015
152
18

ETS transcription factors induce a unique UV damage signature that drives recurrent mutagenesis in melanoma.
Peng Mao, Alexander J Brown, Shingo Esaki, Svetlana Lockwood, Gregory M K Poon, Michael J Smerdon, Steven A Roberts, John J Wyrick. Nat Commun 2018
34
50

Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution.
Jinchuan Hu, Sheera Adar, Christopher P Selby, Jason D Lieb, Aziz Sancar. Genes Dev 2015
122
16

Landscape of somatic mutations in 560 breast cancer whole-genome sequences.
Serena Nik-Zainal, Helen Davies, Johan Staaf, Manasa Ramakrishna, Dominik Glodzik, Xueqing Zou, Inigo Martincorena, Ludmil B Alexandrov, Sancha Martin, David C Wedge,[...]. Nature 2016
908
16

Reduced mutation rate in exons due to differential mismatch repair.
Joan Frigola, Radhakrishnan Sabarinathan, Loris Mularoni, Ferran Muiños, Abel Gonzalez-Perez, Núria López-Bigas. Nat Genet 2017
54
29

Genome-wide kinetics of DNA excision repair in relation to chromatin state and mutagenesis.
Sheera Adar, Jinchuan Hu, Jason D Lieb, Aziz Sancar. Proc Natl Acad Sci U S A 2016
77
19

Chromosomal landscape of UV damage formation and repair at single-nucleotide resolution.
Peng Mao, Michael J Smerdon, Steven A Roberts, John J Wyrick. Proc Natl Acad Sci U S A 2016
65
23

Transcription restores DNA repair to heterochromatin, determining regional mutation rates in cancer genomes.
Christina L Zheng, Nicholas J Wang, Jongsuk Chung, Homayoun Moslehi, J Zachary Sanborn, Joseph S Hur, Eric A Collisson, Swapna S Vemula, Agne Naujokas, Kami E Chiotti,[...]. Cell Rep 2014
59
25

OncodriveFML: a general framework to identify coding and non-coding regions with cancer driver mutations.
Loris Mularoni, Radhakrishnan Sabarinathan, Jordi Deu-Pons, Abel Gonzalez-Perez, Núria López-Bigas. Genome Biol 2016
91
16



Functional Mutations Form at CTCF-Cohesin Binding Sites in Melanoma Due to Uneven Nucleotide Excision Repair across the Motif.
Rebecca C Poulos, Julie A I Thoms, Yi Fang Guan, Ashwin Unnikrishnan, John E Pimanda, Jason W H Wong. Cell Rep 2016
26
57

Somatic and Germline Mutation Periodicity Follow the Orientation of the DNA Minor Groove around Nucleosomes.
Oriol Pich, Ferran Muiños, Radhakrishnan Sabarinathan, Iker Reyes-Salazar, Abel Gonzalez-Perez, Nuria Lopez-Bigas. Cell 2018
34
44

Lagging-strand replication shapes the mutational landscape of the genome.
Martin A M Reijns, Harriet Kemp, James Ding, Sophie Marion de Procé, Andrew P Jackson, Martin S Taylor. Nature 2015
126
14

Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair.
Nicholas J Haradhvala, Paz Polak, Petar Stojanov, Kyle R Covington, Eve Shinbrot, Julian M Hess, Esther Rheinbay, Jaegil Kim, Yosef E Maruvka, Lior Z Braunstein,[...]. Cell 2016
186
14

International network of cancer genome projects.
Thomas J Hudson, Warwick Anderson, Axel Artez, Anna D Barker, Cindy Bell, Rosa R Bernabé, M K Bhan, Fabien Calvo, Iiro Eerola, Daniela S Gerhard,[...]. Nature 2010
14

Universal Patterns of Selection in Cancer and Somatic Tissues.
Iñigo Martincorena, Keiran M Raine, Moritz Gerstung, Kevin J Dawson, Kerstin Haase, Peter Van Loo, Helen Davies, Michael R Stratton, Peter J Campbell. Cell 2017
349
14

Dynamic maps of UV damage formation and repair for the human genome.
Jinchuan Hu, Ogun Adebali, Sheera Adar, Aziz Sancar. Proc Natl Acad Sci U S A 2017
55
23

Recurrent promoter mutations in melanoma are defined by an extended context-specific mutational signature.
Nils Johan Fredriksson, Kerryn Elliott, Stefan Filges, Jimmy Van den Eynden, Anders Ståhlberg, Erik Larsson. PLoS Genet 2017
29
44

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing.
R Scott Hansen, Sean Thomas, Richard Sandstrom, Theresa K Canfield, Robert E Thurman, Molly Weaver, Michael O Dorschner, Stanley M Gartler, John A Stamatoyannopoulos. Proc Natl Acad Sci U S A 2010
327
12

The topography of mutational processes in breast cancer genomes.
Sandro Morganella, Ludmil B Alexandrov, Dominik Glodzik, Xueqing Zou, Helen Davies, Johan Staaf, Anieta M Sieuwerts, Arie B Brinkman, Sancha Martin, Manasa Ramakrishna,[...]. Nat Commun 2016
132
12

Mutational processes molding the genomes of 21 breast cancers.
Serena Nik-Zainal, Ludmil B Alexandrov, David C Wedge, Peter Van Loo, Christopher D Greenman, Keiran Raine, David Jones, Jonathan Hinton, John Marshall, Lucy A Stebbings,[...]. Cell 2012
12

Understanding nucleotide excision repair and its roles in cancer and ageing.
Jurgen A Marteijn, Hannes Lans, Wim Vermeulen, Jan H J Hoeijmakers. Nat Rev Mol Cell Biol 2014
498
12

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
12

Human mutation rate associated with DNA replication timing.
John A Stamatoyannopoulos, Ivan Adzhubei, Robert E Thurman, Gregory V Kryukov, Sergei M Mirkin, Shamil R Sunyaev. Nat Genet 2009
244
12

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
12

The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
11

LARVA: an integrative framework for large-scale analysis of recurrent variants in noncoding annotations.
Lucas Lochovsky, Jing Zhang, Yao Fu, Ekta Khurana, Mark Gerstein. Nucleic Acids Res 2015
37
29

Discovery and saturation analysis of cancer genes across 21 tumour types.
Michael S Lawrence, Petar Stojanov, Craig H Mermel, James T Robinson, Levi A Garraway, Todd R Golub, Matthew Meyerson, Stacey B Gabriel, Eric S Lander, Gad Getz. Nature 2014
11

Deciphering signatures of mutational processes operative in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Peter J Campbell, Michael R Stratton. Cell Rep 2013
563
11

Oncogene regulation. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element.
Marc R Mansour, Brian J Abraham, Lars Anders, Alla Berezovskaya, Alejandro Gutierrez, Adam D Durbin, Julia Etchin, Lee Lawton, Stephen E Sallan, Lewis B Silverman,[...]. Science 2014
372
11

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
11

Recurrent and functional regulatory mutations in breast cancer.
Esther Rheinbay, Prasanna Parasuraman, Jonna Grimsby, Grace Tiao, Jesse M Engreitz, Jaegil Kim, Michael S Lawrence, Amaro Taylor-Weiner, Sergio Rodriguez-Cuevas, Mara Rosenberg,[...]. Nature 2017
143
11

Mutational signatures associated with tobacco smoking in human cancer.
Ludmil B Alexandrov, Young Seok Ju, Kerstin Haase, Peter Van Loo, Iñigo Martincorena, Serena Nik-Zainal, Yasushi Totoki, Akihiro Fujimoto, Hidewaki Nakagawa, Tatsuhiro Shibata,[...]. Science 2016
399
11

The cancer genome.
Michael R Stratton, Peter J Campbell, P Andrew Futreal. Nature 2009
10

Cancer genome landscapes.
Bert Vogelstein, Nickolas Papadopoulos, Victor E Velculescu, Shibin Zhou, Luis A Diaz, Kenneth W Kinzler. Science 2013
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.