A citation-based method for searching scientific literature

Akatsuki Saito, Damien Ferhadian, Gregory A Sowd, Erik Serrao, Jiong Shi, Upul D Halambage, Samantha Teng, Juan Soto, Mohammad Adnan Siddiqui, Alan N Engelman, Christopher Aiken, Masahiro Yamashita. J Virol 2016
Times Cited: 49







List of co-cited articles
566 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Host cofactors and pharmacologic ligands share an essential interface in HIV-1 capsid that is lost upon disassembly.
Amanda J Price, David A Jacques, William A McEwan, Adam J Fletcher, Sebastian Essig, Jason W Chin, Upul D Halambage, Christopher Aiken, Leo C James. PLoS Pathog 2014
157
71

Structural basis of HIV-1 capsid recognition by PF74 and CPSF6.
Akash Bhattacharya, Steven L Alam, Thomas Fricke, Kaneil Zadrozny, Jaroslaw Sedzicki, Alexander B Taylor, Borries Demeler, Owen Pornillos, Barbie K Ganser-Pornillos, Felipe Diaz-Griffero,[...]. Proc Natl Acad Sci U S A 2014
140
67

Small-molecule inhibition of human immunodeficiency virus type 1 infection by virus capsid destabilization.
Jiong Shi, Jing Zhou, Vaibhav B Shah, Christopher Aiken, Kevin Whitby. J Virol 2011
167
63

HIV-1 capsid: the multifaceted key player in HIV-1 infection.
Edward M Campbell, Thomas J Hope. Nat Rev Microbiol 2015
215
61

Flexible use of nuclear import pathways by HIV-1.
KyeongEun Lee, Zandrea Ambrose, Thomas D Martin, Ilker Oztop, Alok Mulky, John G Julias, Nick Vandegraaff, Joerg G Baumann, Rui Wang, Wendy Yuen,[...]. Cell Host Microbe 2010
302
55

HIV capsid is a tractable target for small molecule therapeutic intervention.
Wade S Blair, Chris Pickford, Stephen L Irving, David G Brown, Marie Anderson, Richard Bazin, Joan Cao, Giuseppe Ciaramella, Jason Isaacson, Lynn Jackson,[...]. PLoS Pathog 2010
184
53

HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency.
Torsten Schaller, Karen E Ocwieja, Jane Rasaiyaah, Amanda J Price, Troy L Brady, Shoshannah L Roth, Stéphane Hué, Adam J Fletcher, KyeongEun Lee, Vineet N KewalRamani,[...]. PLoS Pathog 2011
316
53


HIV-1 evades innate immune recognition through specific cofactor recruitment.
Jane Rasaiyaah, Choon Ping Tan, Adam J Fletcher, Amanda J Price, Caroline Blondeau, Laura Hilditch, David A Jacques, David L Selwood, Leo C James, Mahdad Noursadeghi,[...]. Nature 2013
295
48

CPSF6 defines a conserved capsid interface that modulates HIV-1 replication.
Amanda J Price, Adam J Fletcher, Torsten Schaller, Tom Elliott, KyeongEun Lee, Vineet N KewalRamani, Jason W Chin, Greg J Towers, Leo C James. PLoS Pathog 2012
163
48

Quantitative microscopy of functional HIV post-entry complexes reveals association of replication with the viral capsid.
Ke Peng, Walter Muranyi, Bärbel Glass, Vibor Laketa, Stephen R Yant, Luong Tsai, Tomas Cihlar, Barbara Müller, Hans-Georg Kräusslich. Elife 2014
119
42

Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication.
Brett M Forshey, Uta von Schwedler, Wesley I Sundquist, Christopher Aiken. J Virol 2002
384
40

Complementary assays reveal a relationship between HIV-1 uncoating and reverse transcription.
Amy E Hulme, Omar Perez, Thomas J Hope. Proc Natl Acad Sci U S A 2011
176
40


A critical role for alternative polyadenylation factor CPSF6 in targeting HIV-1 integration to transcriptionally active chromatin.
Gregory A Sowd, Erik Serrao, Hao Wang, Weifeng Wang, Hind J Fadel, Eric M Poeschla, Alan N Engelman. Proc Natl Acad Sci U S A 2016
125
36

STRUCTURAL VIROLOGY. X-ray crystal structures of native HIV-1 capsid protein reveal conformational variability.
Anna T Gres, Karen A Kirby, Vineet N KewalRamani, John J Tanner, Owen Pornillos, Stefan G Sarafianos. Science 2015
130
36




Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Gongpu Zhao, Juan R Perilla, Ernest L Yufenyuy, Xin Meng, Bo Chen, Jiying Ning, Jinwoo Ahn, Angela M Gronenborn, Klaus Schulten, Christopher Aiken,[...]. Nature 2013
443
34

HIV-1 capsid is involved in post-nuclear entry steps.
Nan-Yu Chen, Lihong Zhou, Paul J Gane, Silvana Opp, Neil J Ball, Giuseppe Nicastro, Madeleine Zufferey, Cindy Buffone, Jeremy Luban, David Selwood,[...]. Retrovirology 2016
41
39

X-ray structures of the hexameric building block of the HIV capsid.
Owen Pornillos, Barbie K Ganser-Pornillos, Brian N Kelly, Yuanzi Hua, Frank G Whitby, C David Stout, Wesley I Sundquist, Christopher P Hill, Mark Yeager. Cell 2009
357
32

Capsid-CPSF6 Interaction Licenses Nuclear HIV-1 Trafficking to Sites of Viral DNA Integration.
Vasudevan Achuthan, Jill M Perreira, Gregory A Sowd, Maritza Puray-Chavez, William M McDougall, Adriana Paulucci-Holthauzen, Xiaolin Wu, Hind J Fadel, Eric M Poeschla, Asha S Multani,[...]. Cell Host Microbe 2018
78
32

HIV-1 nuclear import in macrophages is regulated by CPSF6-capsid interactions at the nuclear pore complex.
David Alejandro Bejarano, Ke Peng, Vibor Laketa, Kathleen Börner, K Laurence Jost, Bojana Lucic, Bärbel Glass, Marina Lusic, Barbara Müller, Hans-Georg Kräusslich. Elife 2019
77
32

Discovery of novel small-molecule HIV-1 replication inhibitors that stabilize capsid complexes.
Louie Lamorte, Steve Titolo, Christopher T Lemke, Nathalie Goudreau, Jean-François Mercier, Elizabeth Wardrop, Vaibhav B Shah, Uta K von Schwedler, Charles Langelier, Soma S R Banik,[...]. Antimicrob Agents Chemother 2013
72
30


Extreme genetic fragility of the HIV-1 capsid.
Suzannah J Rihn, Sam J Wilson, Nick J Loman, Mudathir Alim, Saskia E Bakker, David Bhella, Robert J Gifford, Frazer J Rixon, Paul D Bieniasz. PLoS Pathog 2013
120
30

Inositol phosphates are assembly co-factors for HIV-1.
Robert A Dick, Kaneil K Zadrozny, Chaoyi Xu, Florian K M Schur, Terri D Lyddon, Clifton L Ricana, Jonathan M Wagner, Juan R Perilla, Barbie K Ganser-Pornillos, Marc C Johnson,[...]. Nature 2018
87
30

HIV-1 assembly, budding, and maturation.
Wesley I Sundquist, Hans-Georg Kräusslich. Cold Spring Harb Perspect Med 2012
447
28

Direct Visualization of HIV-1 Replication Intermediates Shows that Capsid and CPSF6 Modulate HIV-1 Intra-nuclear Invasion and Integration.
Christopher R Chin, Jill M Perreira, George Savidis, Jocelyn M Portmann, Aaron M Aker, Eric M Feeley, Miles C Smith, Abraham L Brass. Cell Rep 2015
92
28

The host proteins transportin SR2/TNPO3 and cyclophilin A exert opposing effects on HIV-1 uncoating.
Vaibhav B Shah, Jiong Shi, David R Hout, Ilker Oztop, Lavanya Krishnan, Jinwoo Ahn, Matthew S Shotwell, Alan Engelman, Christopher Aiken. J Virol 2013
99
28

The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys.
Matthew Stremlau, Christopher M Owens, Michel J Perron, Michael Kiessling, Patrick Autissier, Joseph Sodroski. Nature 2004
28

Capsid-CPSF6 Interaction Is Dispensable for HIV-1 Replication in Primary Cells but Is Selected during Virus Passage In Vivo.
Akatsuki Saito, Matthew S Henning, Erik Serrao, Brittany N Dubose, Samantha Teng, Jing Huang, Xiangming Li, Namiko Saito, Saumendra Prasad Roy, Mohammad Adnan Siddiqui,[...]. J Virol 2016
38
36

HIV-1 uses dynamic capsid pores to import nucleotides and fuel encapsidated DNA synthesis.
David A Jacques, William A McEwan, Laura Hilditch, Amanda J Price, Greg J Towers, Leo C James. Nature 2016
109
28


Human nucleoporins promote HIV-1 docking at the nuclear pore, nuclear import and integration.
Francesca Di Nunzio, Anne Danckaert, Thomas Fricke, Patricio Perez, Juliette Fernandez, Emmanuelle Perret, Pascal Roux, Spencer Shorte, Pierre Charneau, Felipe Diaz-Griffero,[...]. PLoS One 2012
109
26

Evidence for biphasic uncoating during HIV-1 infection from a novel imaging assay.
Hongzhan Xu, Tamera Franks, Gregory Gibson, Kelly Huber, Nadia Rahm, Caterina Strambio De Castillia, Jeremy Luban, Christopher Aiken, Simon Watkins, Nicolas Sluis-Cremer,[...]. Retrovirology 2013
57
26

BI-2 destabilizes HIV-1 cores during infection and Prevents Binding of CPSF6 to the HIV-1 Capsid.
Thomas Fricke, Cindy Buffone, Silvana Opp, Jose Valle-Casuso, Felipe Diaz-Griffero. Retrovirology 2014
41
31

Time-Resolved Imaging of Single HIV-1 Uncoating In Vitro and in Living Cells.
Ashwanth C Francis, Mariana Marin, Jiong Shi, Christopher Aiken, Gregory B Melikyan. PLoS Pathog 2016
70
26

The structure and flexibility of conical HIV-1 capsids determined within intact virions.
Simone Mattei, Bärbel Glass, Wim J H Hagen, Hans-Georg Kräusslich, John A G Briggs. Science 2016
118
26

IP6 is an HIV pocket factor that prevents capsid collapse and promotes DNA synthesis.
Donna L Mallery, Chantal L Márquez, William A McEwan, Claire F Dickson, David A Jacques, Madhanagopal Anandapadamanaban, Katsiaryna Bichel, Gregory J Towers, Adolfo Saiardi, Till Böcking,[...]. Elife 2018
71
26

PF74 Reinforces the HIV-1 Capsid To Impair Reverse Transcription-Induced Uncoating.
Sanela Rankovic, Ruben Ramalho, Christopher Aiken, Itay Rousso. J Virol 2018
32
40

HIV-1 assembly, release and maturation.
Eric O Freed. Nat Rev Microbiol 2015
254
24

Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication.
Renate König, Yingyao Zhou, Daniel Elleder, Tracy L Diamond, Ghislain M C Bonamy, Jeffrey T Irelan, Chih-Yuan Chiang, Buu P Tu, Paul D De Jesus, Caroline E Lilley,[...]. Cell 2008
719
24

Identification of host proteins required for HIV infection through a functional genomic screen.
Abraham L Brass, Derek M Dykxhoorn, Yair Benita, Nan Yan, Alan Engelman, Ramnik J Xavier, Judy Lieberman, Stephen J Elledge. Science 2008
24



Specific incorporation of cyclophilin A into HIV-1 virions.
E K Franke, H E Yuan, J Luban. Nature 1994
613
24

Assembly and analysis of conical models for the HIV-1 core.
B K Ganser, S Li, V Y Klishko, J T Finch, W I Sundquist. Science 1999
456
24

Capsid-Dependent Host Factors in HIV-1 Infection.
Masahiro Yamashita, Alan N Engelman. Trends Microbiol 2017
61
24


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.