A citation-based method for searching scientific literature

Hansi Weissensteiner, Lukas Forer, Christian Fuchsberger, Bernd Schöpf, Anita Kloss-Brandstätter, Günther Specht, Florian Kronenberg, Sebastian Schönherr. Nucleic Acids Res 2016
Times Cited: 71







List of co-cited articles
525 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing.
Hansi Weissensteiner, Dominic Pacher, Anita Kloss-Brandstätter, Lukas Forer, Günther Specht, Hans-Jürgen Bandelt, Florian Kronenberg, Antonio Salas, Sebastian Schönherr. Nucleic Acids Res 2016
317
33

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing.
Claudia Calabrese, Domenico Simone, Maria Angela Diroma, Mariangela Santorsola, Cristiano Guttà, Giuseppe Gasparre, Ernesto Picardi, Graziano Pesole, Marcella Attimonelli. Bioinformatics 2014
108
29


Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.
R M Andrews, I Kubacka, P F Chinnery, R N Lightowlers, D M Turnbull, N Howell. Nat Genet 1999
23

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
19

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
18


mtDNA Variation and Analysis Using Mitomap and Mitomaster.
Marie T Lott, Jeremy N Leipzig, Olga Derbeneva, H Michael Xie, Dimitra Chalkia, Mahdi Sarmady, Vincent Procaccio, Douglas C Wallace. Curr Protoc Bioinformatics 2013
238
16

Mitochondrial DNA heteroplasmy in the emerging field of massively parallel sequencing.
Rebecca S Just, Jodi A Irwin, Walther Parson. Forensic Sci Int Genet 2015
72
16

MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis.
Yan Guo, Jiang Li, Chung-I Li, Yu Shyr, David C Samuels. Bioinformatics 2013
68
17

Extensive pathogenicity of mitochondrial heteroplasmy in healthy human individuals.
Kaixiong Ye, Jian Lu, Fei Ma, Alon Keinan, Zhenglong Gu. Proc Natl Acad Sci U S A 2014
138
16

The genomic landscape of polymorphic human nuclear mitochondrial insertions.
Gargi Dayama, Sarah B Emery, Jeffrey M Kidd, Ryan E Mills. Nucleic Acids Res 2014
86
16


Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes.
Mingkun Li, Anna Schönberg, Michael Schaefer, Roland Schroeder, Ivane Nasidze, Mark Stoneking. Am J Hum Genet 2010
199
15

Validation of Next-Generation Sequencing of Entire Mitochondrial Genomes and the Diversity of Mitochondrial DNA Mutations in Oral Squamous Cell Carcinoma.
Anita Kloss-Brandstätter, Hansi Weissensteiner, Gertraud Erhart, Georg Schäfer, Lukas Forer, Sebastian Schönherr, Dominic Pacher, Christof Seifarth, Andrea Stöckl, Liane Fendt,[...]. PLoS One 2015
23
39

Mitochondrial DNA mutations in human disease.
Robert W Taylor, Doug M Turnbull. Nat Rev Genet 2005
12

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
12

Heteroplasmic mitochondrial DNA mutations in normal and tumour cells.
Yiping He, Jian Wu, Devin C Dressman, Christine Iacobuzio-Donahue, Sanford D Markowitz, Victor E Velculescu, Luis A Diaz, Kenneth W Kinzler, Bert Vogelstein, Nickolas Papadopoulos. Nature 2010
369
12

Very low-level heteroplasmy mtDNA variations are inherited in humans.
Yan Guo, Chung-I Li, Quanhu Sheng, Jeanette F Winther, Qiuyin Cai, John D Boice, Yu Shyr. J Genet Genomics 2013
34
26

Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
12

Mitochondrial genetics.
Patrick Francis Chinnery, Gavin Hudson. Br Med Bull 2013
183
12


A "Copernican" reassessment of the human mitochondrial DNA tree from its root.
Doron M Behar, Mannis van Oven, Saharon Rosset, Mait Metspalu, Eva-Liis Loogväli, Nuno M Silva, Toomas Kivisild, Antonio Torroni, Richard Villems. Am J Hum Genet 2012
262
11


Automated inference of molecular mechanisms of disease from amino acid substitutions.
Biao Li, Vidhya G Krishnan, Matthew E Mort, Fuxiao Xin, Kishore K Kamati, David N Cooper, Sean D Mooney, Predrag Radivojac. Bioinformatics 2009
517
11

Mitochondrial threshold effects.
Rodrigue Rossignol, Benjamin Faustin, Christophe Rocher, Monique Malgat, Jean-Pierre Mazat, Thierry Letellier. Biochem J 2003
457
11

Comprehensive next-generation sequence analyses of the entire mitochondrial genome reveal new insights into the molecular diagnosis of mitochondrial DNA disorders.
Hong Cui, Fangyuan Li, David Chen, Guoli Wang, Cavatina K Truong, Gregory M Enns, Brett Graham, Margherita Milone, Megan L Landsverk, Jing Wang,[...]. Genet Med 2013
64
12


Mitochondrial DNA genetics and the heteroplasmy conundrum in evolution and disease.
Douglas C Wallace, Dimitra Chalkia. Cold Spring Harb Perspect Biol 2013
333
11

Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations.
Mingkun Li, Roland Schröder, Shengyu Ni, Burkhard Madea, Mark Stoneking. Proc Natl Acad Sci U S A 2015
106
11

Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier.
Daniel Navarro-Gomez, Jeremy Leipzig, Lishuang Shen, Marie Lott, Alphons P M Stassen, Douglas C Wallace, Janey L Wiggs, Marni J Falk, Mannis van Oven, Xiaowu Gai. Bioinformatics 2015
35
20

Assessing Mitochondrial DNA Variation and Copy Number in Lymphocytes of ~2,000 Sardinians Using Tailored Sequencing Analysis Tools.
Jun Ding, Carlo Sidore, Thomas J Butler, Mary Kate Wing, Yong Qian, Osorio Meirelles, Fabio Busonero, Lam C Tsoi, Andrea Maschio, Andrea Angius,[...]. PLoS Genet 2015
58
12

mit-o-matic: a comprehensive computational pipeline for clinical evaluation of mitochondrial variations from next-generation sequencing datasets.
Shamsudheen Karuthedath Vellarikkal, Heena Dhiman, Kandarp Joshi, Yasha Hasija, Sridhar Sivasubbu, Vinod Scaria. Hum Mutat 2015
19
36

Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer.
Young Seok Ju, Ludmil B Alexandrov, Moritz Gerstung, Inigo Martincorena, Serena Nik-Zainal, Manasa Ramakrishna, Helen R Davies, Elli Papaemmanuil, Gunes Gundem, Adam Shlien,[...]. Elife 2014
211
9

Human mitochondrial DNA: roles of inherited and somatic mutations.
Eric A Schon, Salvatore DiMauro, Michio Hirano. Nat Rev Genet 2012
420
9

Universal heteroplasmy of human mitochondrial DNA.
Brendan A I Payne, Ian J Wilson, Patrick Yu-Wai-Man, Jonathan Coxhead, David Deehan, Rita Horvath, Robert W Taylor, David C Samuels, Mauro Santibanez-Koref, Patrick F Chinnery. Hum Mol Genet 2013
234
9

Predicting the pathogenicity of novel variants in mitochondrial tRNA with MitoTIP.
Sanjay Sonney, Jeremy Leipzig, Marie T Lott, Shiping Zhang, Vincent Procaccio, Douglas C Wallace, Neal Sondheimer. PLoS Comput Biol 2017
39
17

Prevalence of nuclear and mitochondrial DNA mutations related to adult mitochondrial disease.
Gráinne S Gorman, Andrew M Schaefer, Yi Ng, Nicholas Gomez, Emma L Blakely, Charlotte L Alston, Catherine Feeney, Rita Horvath, Patrick Yu-Wai-Man, Patrick F Chinnery,[...]. Ann Neurol 2015
404
9

Comprehensive molecular characterization of mitochondrial genomes in human cancers.
Yuan Yuan, Young Seok Ju, Youngwook Kim, Jun Li, Yumeng Wang, Christopher J Yoon, Yang Yang, Inigo Martincorena, Chad J Creighton, John N Weinstein,[...]. Nat Genet 2020
71
9

Sequencing strategy for the whole mitochondrial genome resulting in high quality sequences.
Liane Fendt, Bettina Zimmermann, Martin Daniaux, Walther Parson. BMC Genomics 2009
53
11


Mitochondrial diseases.
Gráinne S Gorman, Patrick F Chinnery, Salvatore DiMauro, Michio Hirano, Yasutoshi Koga, Robert McFarland, Anu Suomalainen, David R Thorburn, Massimo Zeviani, Douglass M Turnbull. Nat Rev Dis Primers 2016
456
8


Investigation of heteroplasmy in the human mitochondrial DNA control region: a synthesis of observations from more than 5000 global population samples.
Jodi A Irwin, Jessica L Saunier, Harald Niederstätter, Katharine M Strouss, Kimberly A Sturk, Toni M Diegoli, Anita Brandstätter, Walther Parson, Thomas J Parsons. J Mol Evol 2009
105
8

HAPLOFIND: a new method for high-throughput mtDNA haplogroup assignment.
Dario Vianello, Federica Sevini, Gastone Castellani, Laura Lomartire, Miriam Capri, Claudio Franceschi. Hum Mutat 2013
93
7


Circos: an information aesthetic for comparative genomics.
Martin Krzywinski, Jacqueline Schein, Inanç Birol, Joseph Connors, Randy Gascoyne, Doug Horsman, Steven J Jones, Marco A Marra. Genome Res 2009
7

A mitochondrial bioenergetic etiology of disease.
Douglas C Wallace. J Clin Invest 2013
171
7

High-throughput sequencing in mitochondrial DNA research.
Fei Ye, David C Samuels, Travis Clark, Yan Guo. Mitochondrion 2014
53
9

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets.
Andreas Wilm, Pauline Poh Kim Aw, Denis Bertrand, Grace Hui Ting Yeo, Swee Hoe Ong, Chang Hua Wong, Chiea Chuen Khor, Rosemary Petric, Martin Lloyd Hibberd, Niranjan Nagarajan. Nucleic Acids Res 2012
536
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.