A citation-based method for searching scientific literature

Hansi Weissensteiner, Dominic Pacher, Anita Kloss-Brandstätter, Lukas Forer, Günther Specht, Hans-Jürgen Bandelt, Florian Kronenberg, Antonio Salas, Sebastian Schönherr. Nucleic Acids Res 2016
Times Cited: 317







List of co-cited articles
699 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.
R M Andrews, I Kubacka, P F Chinnery, R N Lightowlers, D M Turnbull, N Howell. Nat Genet 1999
42

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
39



mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters.
Hákon Jónsson, Aurélien Ginolhac, Mikkel Schubert, Philip L F Johnson, Ludovic Orlando. Bioinformatics 2013
498
27

Fast model-based estimation of ancestry in unrelated individuals.
David H Alexander, John Novembre, Kenneth Lange. Genome Res 2009
27

Ancient admixture in human history.
Nick Patterson, Priya Moorjani, Yontao Luo, Swapan Mallick, Nadin Rohland, Yiping Zhan, Teri Genschoreck, Teresa Webster, David Reich. Genetics 2012
910
27

Population structure and eigenanalysis.
Nick Patterson, Alkes L Price, David Reich. PLoS Genet 2006
24

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
23

Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA.
Gabriel Renaud, Viviane Slon, Ana T Duggan, Janet Kelso. Genome Biol 2015
145
22

Massive migration from the steppe was a source for Indo-European languages in Europe.
Wolfgang Haak, Iosif Lazaridis, Nick Patterson, Nadin Rohland, Swapan Mallick, Bastien Llamas, Guido Brandt, Susanne Nordenfelt, Eadaoin Harney, Kristin Stewardson,[...]. Nature 2015
546
21

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.
Jesse Dabney, Michael Knapp, Isabelle Glocke, Marie-Theres Gansauge, Antje Weihmann, Birgit Nickel, Cristina Valdiosera, Nuria García, Svante Pääbo, Juan-Luis Arsuaga,[...]. Proc Natl Acad Sci U S A 2013
495
21

A revised timescale for human evolution based on ancient mitochondrial genomes.
Qiaomei Fu, Alissa Mittnik, Philip L F Johnson, Kirsten Bos, Martina Lari, Ruth Bollongino, Chengkai Sun, Liane Giemsch, Ralf Schmitz, Joachim Burger,[...]. Curr Biol 2013
262
20

PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
20

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
19


ANGSD: Analysis of Next Generation Sequencing Data.
Thorfinn Sand Korneliussen, Anders Albrechtsen, Rasmus Nielsen. BMC Bioinformatics 2014
791
19

Genome-wide patterns of selection in 230 ancient Eurasians.
Iain Mathieson, Iosif Lazaridis, Nadin Rohland, Swapan Mallick, Nick Patterson, Songül Alpaslan Roodenberg, Eadaoin Harney, Kristin Stewardson, Daniel Fernandes, Mario Novak,[...]. Nature 2015
487
18

Second-generation PLINK: rising to the challenge of larger and richer datasets.
Christopher C Chang, Carson C Chow, Laurent Cam Tellier, Shashaank Vattikuti, Shaun M Purcell, James J Lee. Gigascience 2015
17

Genomic insights into the origin of farming in the ancient Near East.
Iosif Lazaridis, Dani Nadel, Gary Rollefson, Deborah C Merrett, Nadin Rohland, Swapan Mallick, Daniel Fernandes, Mario Novak, Beatriz Gamarra, Kendra Sirak,[...]. Nature 2016
308
17

The genetic history of Ice Age Europe.
Qiaomei Fu, Cosimo Posth, Mateja Hajdinjak, Martin Petr, Swapan Mallick, Daniel Fernandes, Anja Furtwängler, Wolfgang Haak, Matthias Meyer, Alissa Mittnik,[...]. Nature 2016
295
16

Population genomics of Bronze Age Eurasia.
Morten E Allentoft, Martin Sikora, Karl-Göran Sjögren, Simon Rasmussen, Morten Rasmussen, Jesper Stenderup, Peter B Damgaard, Hannes Schroeder, Torbjörn Ahlström, Lasse Vinner,[...]. Nature 2015
462
15

The genomic history of southeastern Europe.
Iain Mathieson, Songül Alpaslan-Roodenberg, Cosimo Posth, Anna Szécsényi-Nagy, Nadin Rohland, Swapan Mallick, Iñigo Olalde, Nasreen Broomandkhoshbacht, Francesca Candilio, Olivia Cheronet,[...]. Nature 2018
156
14

Ancient human genomes suggest three ancestral populations for present-day Europeans.
Iosif Lazaridis, Nick Patterson, Alissa Mittnik, Gabriel Renaud, Swapan Mallick, Karola Kirsanow, Peter H Sudmant, Joshua G Schraiber, Sergi Castellano, Mark Lipson,[...]. Nature 2014
549
14

137 ancient human genomes from across the Eurasian steppes.
Peter de Barros Damgaard, Nina Marchi, Simon Rasmussen, Michaël Peyrot, Gabriel Renaud, Thorfinn Korneliussen, J Víctor Moreno-Mayar, Mikkel Winther Pedersen, Amy Goldberg, Emma Usmanova,[...]. Nature 2018
115
13

EAGER: efficient ancient genome reconstruction.
Alexander Peltzer, Günter Jäger, Alexander Herbig, Alexander Seitz, Christian Kniep, Johannes Krause, Kay Nieselt. Genome Biol 2016
132
13

The formation of human populations in South and Central Asia.
Vagheesh M Narasimhan, Nick Patterson, Priya Moorjani, Nadin Rohland, Rebecca Bernardos, Swapan Mallick, Iosif Lazaridis, Nathan Nakatsuka, Iñigo Olalde, Mark Lipson,[...]. Science 2019
99
13

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Swapan Mallick, Heng Li, Mark Lipson, Iain Mathieson, Melissa Gymrek, Fernando Racimo, Mengyao Zhao, Niru Chennagiri, Susanne Nordenfelt, Arti Tandon,[...]. Nature 2016
517
12

The first horse herders and the impact of early Bronze Age steppe expansions into Asia.
Peter de Barros Damgaard, Rui Martiniano, Jack Kamm, J Víctor Moreno-Mayar, Guus Kroonen, Michaël Peyrot, Gojko Barjamovic, Simon Rasmussen, Claus Zacho, Nurbol Baimukhanov,[...]. Science 2018
99
12

Estimating genetic kin relationships in prehistoric populations.
Jose Manuel Monroy Kuhn, Mattias Jakobsson, Torsten Günther. PLoS One 2018
64
18


AdapterRemoval v2: rapid adapter trimming, identification, and read merging.
Mikkel Schubert, Stinus Lindgreen, Ludovic Orlando. BMC Res Notes 2016
432
12

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform.
Martin Kircher, Susanna Sawyer, Matthias Meyer. Nucleic Acids Res 2012
536
11

The variant call format and VCFtools.
Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A Albers, Eric Banks, Mark A DePristo, Robert E Handsaker, Gerton Lunter, Gabor T Marth, Stephen T Sherry,[...]. Bioinformatics 2011
11

Genome flux and stasis in a five millennium transect of European prehistory.
Cristina Gamba, Eppie R Jones, Matthew D Teasdale, Russell L McLaughlin, Gloria Gonzalez-Fortes, Valeria Mattiangeli, László Domboróczki, Ivett Kővári, Ildikó Pap, Alexandra Anders,[...]. Nat Commun 2014
279
10

mtDNA Variation and Analysis Using Mitomap and Mitomaster.
Marie T Lott, Jeremy N Leipzig, Olga Derbeneva, H Michael Xie, Dimitra Chalkia, Mahdi Sarmady, Vincent Procaccio, Douglas C Wallace. Curr Protoc Bioinformatics 2013
238
10

A framework for variation discovery and genotyping using next-generation DNA sequencing data.
Mark A DePristo, Eric Banks, Ryan Poplin, Kiran V Garimella, Jared R Maguire, Christopher Hartl, Anthony A Philippakis, Guillermo del Angel, Manuel A Rivas, Matt Hanna,[...]. Nat Genet 2011
10

Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
10

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing.
Claudia Calabrese, Domenico Simone, Maria Angela Diroma, Mariangela Santorsola, Cristiano Guttà, Giuseppe Gasparre, Ernesto Picardi, Graziano Pesole, Marcella Attimonelli. Bioinformatics 2014
108
9

Robust relationship inference in genome-wide association studies.
Ani Manichaikul, Josyf C Mychaleckyj, Stephen S Rich, Kathy Daly, Michèle Sale, Wei-Min Chen. Bioinformatics 2010
925
9


A high-coverage genome sequence from an archaic Denisovan individual.
Matthias Meyer, Martin Kircher, Marie-Theres Gansauge, Heng Li, Fernando Racimo, Swapan Mallick, Joshua G Schraiber, Flora Jay, Kay Prüfer, Cesare de Filippo,[...]. Science 2012
851
9

Ancient DNA indicates human population shifts and admixture in northern and southern China.
Melinda A Yang, Xuechun Fan, Bo Sun, Chungyu Chen, Jianfeng Lang, Ying-Chin Ko, Cheng-Hwa Tsang, Hunglin Chiu, Tianyi Wang, Qingchuan Bao,[...]. Science 2020
43
20

Multiplexed DNA sequence capture of mitochondrial genomes using PCR products.
Tomislav Maricic, Mark Whitten, Svante Pääbo. PLoS One 2010
294
9

mtDNA-Server: next-generation sequencing data analysis of human mitochondrial DNA in the cloud.
Hansi Weissensteiner, Lukas Forer, Christian Fuchsberger, Bernd Schöpf, Anita Kloss-Brandstätter, Günther Specht, Florian Kronenberg, Sebastian Schönherr. Nucleic Acids Res 2016
71
12

Inference of population structure using dense haplotype data.
Daniel John Lawson, Garrett Hellenthal, Simon Myers, Daniel Falush. PLoS Genet 2012
499
9

A "Copernican" reassessment of the human mitochondrial DNA tree from its root.
Doron M Behar, Mannis van Oven, Saharon Rosset, Mait Metspalu, Eva-Liis Loogväli, Nuno M Silva, Toomas Kivisild, Antonio Torroni, Richard Villems. Am J Hum Genet 2012
262
9

From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.
Geraldine A Van der Auwera, Mauricio O Carneiro, Christopher Hartl, Ryan Poplin, Guillermo Del Angel, Ami Levy-Moonshine, Tadeusz Jordan, Khalid Shakir, David Roazen, Joel Thibault,[...]. Curr Protoc Bioinformatics 2013
9

Ancient Genomes Reveal Yamnaya-Related Ancestry and a Potential Source of Indo-European Speakers in Iron Age Tianshan.
Chao Ning, Chuan-Chao Wang, Shizhu Gao, Yang Yang, Xue Zhang, Xiyan Wu, Fan Zhang, Zhongzhi Nie, Yunpeng Tang, Martine Robbeets,[...]. Curr Biol 2019
20
45

A Dynamic 6,000-Year Genetic History of Eurasia's Eastern Steppe.
Choongwon Jeong, Ke Wang, Shevan Wilkin, William Timothy Treal Taylor, Bryan K Miller, Jan H Bemmann, Raphaela Stahl, Chelsea Chiovelli, Florian Knolle, Sodnom Ulziibayar,[...]. Cell 2020
25
36


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.