A citation-based method for searching scientific literature

Alexa Burger, Helen Lindsay, Anastasia Felker, Christopher Hess, Carolin Anders, Elena Chiavacci, Jonas Zaugg, Lukas M Weber, Raul Catena, Martin Jinek, Mark D Robinson, Christian Mosimann. Development 2016
Times Cited: 154







List of co-cited articles
682 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system.
Li-En Jao, Susan R Wente, Wenbiao Chen. Proc Natl Acad Sci U S A 2013
773
34

Efficient genome editing in zebrafish using a CRISPR-Cas system.
Woong Y Hwang, Yanfang Fu, Deepak Reyon, Morgan L Maeder, Shengdar Q Tsai, Jeffry D Sander, Randall T Peterson, J-R Joanna Yeh, J Keith Joung. Nat Biotechnol 2013
30

A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.
Martin Jinek, Krzysztof Chylinski, Ines Fonfara, Michael Hauer, Jennifer A Doudna, Emmanuelle Charpentier. Science 2012
28

Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs.
James A Gagnon, Eivind Valen, Summer B Thyme, Peng Huang, Laila Akhmetova, Andrea Pauli, Tessa G Montague, Steven Zimmerman, Constance Richter, Alexander F Schier. PLoS One 2014
504
27

A Rapid Method for Directed Gene Knockout for Screening in G0 Zebrafish.
Roland S Wu, Ian I Lam, Hilary Clay, Daniel N Duong, Rahul C Deo, Shaun R Coughlin. Dev Cell 2018
127
27

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo.
Miguel A Moreno-Mateos, Charles E Vejnar, Jean-Denis Beaudoin, Juan P Fernandez, Emily K Mis, Mustafa K Khokha, Antonio J Giraldez. Nat Methods 2015
570
22

Rapid reverse genetic screening using CRISPR in zebrafish.
Arish N Shah, Crystal F Davey, Alex C Whitebirch, Adam C Miller, Cecilia B Moens. Nat Methods 2015
196
22

Multiplex genome engineering using CRISPR/Cas systems.
Le Cong, F Ann Ran, David Cox, Shuailiang Lin, Robert Barretto, Naomi Habib, Patrick D Hsu, Xuebing Wu, Wenyan Jiang, Luciano A Marraffini,[...]. Science 2013
20

High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.
Gaurav K Varshney, Wuhong Pei, Matthew C LaFave, Jennifer Idol, Lisha Xu, Viviana Gallardo, Blake Carrington, Kevin Bishop, MaryPat Jones, Mingyu Li,[...]. Genome Res 2015
276
19

RNA-guided human genome engineering via Cas9.
Prashant Mali, Luhan Yang, Kevin M Esvelt, John Aach, Marc Guell, James E DiCarlo, Julie E Norville, George M Church. Science 2013
16

Stages of embryonic development of the zebrafish.
C B Kimmel, W W Ballard, S R Kimmel, B Ullmann, T F Schilling. Dev Dyn 1995
15

Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins.
Sojung Kim, Daesik Kim, Seung Woo Cho, Jungeun Kim, Jin-Soo Kim. Genome Res 2014
956
14

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
14

Genetic compensation triggered by mutant mRNA degradation.
Mohamed A El-Brolosy, Zacharias Kontarakis, Andrea Rossi, Carsten Kuenne, Stefan Günther, Nana Fukuda, Khrievono Kikhi, Giulia L M Boezio, Carter M Takacs, Shih-Lei Lai,[...]. Nature 2019
395
14

Highly Efficient CRISPR-Cas9-Based Methods for Generating Deletion Mutations and F0 Embryos that Lack Gene Function in Zebrafish.
Kazuyuki Hoshijima, Michael J Jurynec, Dana Klatt Shaw, Ashley M Jacobi, Mark A Behlke, David Jonah Grunwald. Dev Cell 2019
84
16

Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos.
Nannan Chang, Changhong Sun, Lu Gao, Dan Zhu, Xiufei Xu, Xiaojun Zhu, Jing-Wei Xiong, Jianzhong Jeff Xi. Cell Res 2013
526
11

High-resolution in situ hybridization to whole-mount zebrafish embryos.
Christine Thisse, Bernard Thisse. Nat Protoc 2008
11

Development and applications of CRISPR-Cas9 for genome engineering.
Patrick D Hsu, Eric S Lander, Feng Zhang. Cell 2014
10

A CRISPR/Cas9 vector system for tissue-specific gene disruption in zebrafish.
Julien Ablain, Ellen M Durand, Song Yang, Yi Zhou, Leonard I Zon. Dev Cell 2015
224
10

CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering.
Kornel Labun, Tessa G Montague, James A Gagnon, Summer B Thyme, Eivind Valen. Nucleic Acids Res 2016
461
10

Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery.
Steven Lin, Brett T Staahl, Ravi K Alla, Jennifer A Doudna. Elife 2014
668
10

Reverse genetic screening reveals poor correlation between morpholino-induced and mutant phenotypes in zebrafish.
F O Kok, M Shin, C-W Ni, A Gupta, A S Grosse, A van Impel, B C Kirchmaier, J Peterson-Maduro, G Kourkoulis, I Male,[...]. Dev Cell 2015
488
10

Easy quantitative assessment of genome editing by sequence trace decomposition.
Eva K Brinkman, Tao Chen, Mario Amendola, Bas van Steensel. Nucleic Acids Res 2014
10

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
10

Chemically modified guide RNAs enhance CRISPR-Cas genome editing in human primary cells.
Ayal Hendel, Rasmus O Bak, Joseph T Clark, Andrew B Kennedy, Daniel E Ryan, Subhadeep Roy, Israel Steinfeld, Benjamin D Lunstad, Robert J Kaiser, Alec B Wilkens,[...]. Nat Biotechnol 2015
566
9

Genome editing. The new frontier of genome engineering with CRISPR-Cas9.
Jennifer A Doudna, Emmanuelle Charpentier. Science 2014
9

Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage.
Alexis C Komor, Yongjoo B Kim, Michael S Packer, John A Zuris, David R Liu. Nature 2016
9

Efficient CRISPR/Cas9 genome editing with low off-target effects in zebrafish.
Alexander Hruscha, Peter Krawitz, Alexandra Rechenberg, Verena Heinrich, Jochen Hecht, Christian Haass, Bettina Schmid. Development 2013
310
9

Precise and efficient genome editing in zebrafish using the CRISPR/Cas9 system.
Uwe Irion, Jana Krauss, Christiane Nüsslein-Volhard. Development 2014
189
9

DNA targeting specificity of RNA-guided Cas9 nucleases.
Patrick D Hsu, David A Scott, Joshua A Weinstein, F Ann Ran, Silvana Konermann, Vineeta Agarwala, Yinqing Li, Eli J Fine, Xuebing Wu, Ophir Shalem,[...]. Nat Biotechnol 2013
8

Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system.
Andrew R Bassett, Charlotte Tibbit, Chris P Ponting, Ji-Long Liu. Cell Rep 2013
505
8

mpeg1 promoter transgenes direct macrophage-lineage expression in zebrafish.
Felix Ellett, Luke Pase, John W Hayman, Alex Andrianopoulos, Graham J Lieschke. Blood 2011
563
8

Genetic compensation induced by deleterious mutations but not gene knockdowns.
Andrea Rossi, Zacharias Kontarakis, Claudia Gerri, Hendrik Nolte, Soraya Hölper, Marcus Krüger, Didier Y R Stainier. Nature 2015
709
8

CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing.
Miguel A Moreno-Mateos, Juan P Fernandez, Romain Rouet, Charles E Vejnar, Maura A Lane, Emily Mis, Mustafa K Khokha, Jennifer A Doudna, Antonio J Giraldez. Nat Commun 2017
134
8

CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity.
Blake Carrington, Gaurav K Varshney, Shawn M Burgess, Raman Sood. Nucleic Acids Res 2015
70
11

The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs.
Kristen M Kwan, Esther Fujimoto, Clemens Grabher, Benjamin D Mangum, Melissa E Hardy, Douglas S Campbell, John M Parant, H Joseph Yost, John P Kanki, Chi-Bin Chien. Dev Dyn 2007
8

Method for isolation of PCR-ready genomic DNA from zebrafish tissues.
Nathan D Meeker, Sarah A Hutchinson, Linh Ho, Nikolaus S Trede. Biotechniques 2007
237
8

Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases.
Yannick Doyon, Jasmine M McCammon, Jeffrey C Miller, Farhoud Faraji, Catherine Ngo, George E Katibah, Rainier Amora, Toby D Hocking, Lei Zhang, Edward J Rebar,[...]. Nat Biotechnol 2008
610
8

Efficient Multiple Genome Modifications Induced by the crRNAs, tracrRNA and Cas9 Protein Complex in Zebrafish.
Hirohito Kotani, Kiyohito Taimatsu, Rie Ohga, Satoshi Ota, Atsuo Kawahara. PLoS One 2015
59
13

Highly efficient gene knockout in mice and zebrafish with RNA-guided endonucleases.
Young Hoon Sung, Jong Min Kim, Hyun-Taek Kim, Jaehoon Lee, Jisun Jeon, Young Jin, Jung-Hwa Choi, Young Ho Ban, Sang-Jun Ha, Cheol-Hee Kim,[...]. Genome Res 2014
199
7

One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering.
Haoyi Wang, Hui Yang, Chikdu S Shivalila, Meelad M Dawlaty, Albert W Cheng, Feng Zhang, Rudolf Jaenisch. Cell 2013
7

Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system.
Bernd Zetsche, Jonathan S Gootenberg, Omar O Abudayyeh, Ian M Slaymaker, Kira S Makarova, Patrick Essletzbichler, Sara E Volz, Julia Joung, John van der Oost, Aviv Regev,[...]. Cell 2015
7

CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool.
Manuel Stemmer, Thomas Thumberger, Maria Del Sol Keyer, Joachim Wittbrodt, Juan L Mateo. PLoS One 2015
429
7

A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish.
Gaurav K Varshney, Blake Carrington, Wuhong Pei, Kevin Bishop, Zelin Chen, Chunxin Fan, Lisha Xu, Marypat Jones, Matthew C LaFave, Johan Ledin,[...]. Nat Protoc 2016
94
7

Evolved Cas9 variants with broad PAM compatibility and high DNA specificity.
Johnny H Hu, Shannon M Miller, Maarten H Geurts, Weixin Tang, Liwei Chen, Ning Sun, Christina M Zeina, Xue Gao, Holly A Rees, Zhi Lin,[...]. Nature 2018
708
7

Effective CRISPR/Cas9-based nucleotide editing in zebrafish to model human genetic cardiovascular disorders.
Federico Tessadori, Helen I Roessler, Sanne M C Savelberg, Sonja Chocron, Sarah M Kamel, Karen J Duran, Mieke M van Haelst, Gijs van Haaften, Jeroen Bakkers. Dis Model Mech 2018
44
15

A systematic genome-wide analysis of zebrafish protein-coding gene function.
Ross N W Kettleborough, Elisabeth M Busch-Nentwich, Steven A Harvey, Christopher M Dooley, Ewart de Bruijn, Freek van Eeden, Ian Sealy, Richard J White, Colin Herd, Isaac J Nijman,[...]. Nature 2013
381
7

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.
John G Doench, Nicolo Fusi, Meagan Sullender, Mudra Hegde, Emma W Vaimberg, Katherine F Donovan, Ian Smith, Zuzana Tothova, Craig Wilen, Robert Orchard,[...]. Nat Biotechnol 2016
7

A Rapid CRISPR/Cas-based Mutagenesis Assay in Zebrafish for Identification of Genes Involved in Thyroid Morphogenesis and Function.
A Trubiroha, P Gillotay, N Giusti, D Gacquer, F Libert, A Lefort, B Haerlingen, X De Deken, R Opitz, S Costagliola. Sci Rep 2018
25
28

Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases.
Xiangdong Meng, Marcus B Noyes, Lihua J Zhu, Nathan D Lawson, Scot A Wolfe. Nat Biotechnol 2008
540
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.