A citation-based method for searching scientific literature

Ballachanda N Devaiah, Chanelle Case-Borden, Anne Gegonne, Chih Hao Hsu, Qingrong Chen, Daoud Meerzaman, Anup Dey, Keiko Ozato, Dinah S Singer. Nat Struct Mol Biol 2016
Times Cited: 171







List of co-cited articles
1034 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Selective inhibition of BET bromodomains.
Panagis Filippakopoulos, Jun Qi, Sarah Picaud, Yao Shen, William B Smith, Oleg Fedorov, Elizabeth M Morse, Tracey Keates, Tyler T Hickman, Ildiko Felletar,[...]. Nature 2010
36

The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription.
Moon Kyoo Jang, Kazuki Mochizuki, Meisheng Zhou, Ho-Sang Jeong, John N Brady, Keiko Ozato. Mol Cell 2005
865
25

BRD4 is an atypical kinase that phosphorylates serine2 of the RNA polymerase II carboxy-terminal domain.
Ballachanda N Devaiah, Brian A Lewis, Natasha Cherman, Michael C Hewitt, Brian K Albrecht, Pamela G Robey, Keiko Ozato, Robert J Sims, Dinah S Singer. Proc Natl Acad Sci U S A 2012
244
24

Suppression of inflammation by a synthetic histone mimic.
Edwige Nicodeme, Kate L Jeffrey, Uwe Schaefer, Soren Beinke, Scott Dewell, Chun-Wa Chung, Rohit Chandwani, Ivan Marazzi, Paul Wilson, Hervé Coste,[...]. Nature 2010
23

BRD4 and Cancer: going beyond transcriptional regulation.
Benedetta Donati, Eugenia Lorenzini, Alessia Ciarrocchi. Mol Cancer 2018
216
23

Brd4 coactivates transcriptional activation of NF-kappaB via specific binding to acetylated RelA.
Bo Huang, Xiao-Dong Yang, Ming-Ming Zhou, Keiko Ozato, Lin-Feng Chen. Mol Cell Biol 2009
402
21

Selective inhibition of tumor oncogenes by disruption of super-enhancers.
Jakob Lovén, Heather A Hoke, Charles Y Lin, Ashley Lau, David A Orlando, Christopher R Vakoc, James E Bradner, Tong Ihn Lee, Richard A Young. Cell 2013
21

Histone recognition and large-scale structural analysis of the human bromodomain family.
Panagis Filippakopoulos, Sarah Picaud, Maria Mangos, Tracy Keates, Jean-Philippe Lambert, Dalia Barsyte-Lovejoy, Ildiko Felletar, Rudolf Volkmer, Susanne Müller, Tony Pawson,[...]. Cell 2012
962
20

BET bromodomain inhibition as a therapeutic strategy to target c-Myc.
Jake E Delmore, Ghayas C Issa, Madeleine E Lemieux, Peter B Rahl, Junwei Shi, Hannah M Jacobs, Efstathios Kastritis, Timothy Gilpatrick, Ronald M Paranal, Jun Qi,[...]. Cell 2011
19


Structure and ligand of a histone acetyltransferase bromodomain.
C Dhalluin, J E Carlson, L Zeng, C He, A K Aggarwal, M M Zhou. Nature 1999
17

BRD4 mediates NF-κB-dependent epithelial-mesenchymal transition and pulmonary fibrosis via transcriptional elongation.
Bing Tian, Yingxin Zhao, Hong Sun, Yueqing Zhang, Jun Yang, Allan R Brasier. Am J Physiol Lung Cell Mol Physiol 2016
62
24

Bromodomain 4: a cellular Swiss army knife.
Ballachanda N Devaiah, Anne Gegonne, Dinah S Singer. J Leukoc Biol 2016
55
27

Recruitment of P-TEFb for stimulation of transcriptional elongation by the bromodomain protein Brd4.
Zhiyuan Yang, Jasper H N Yik, Ruichuan Chen, Nanhai He, Moon Kyoo Jang, Keiko Ozato, Qiang Zhou. Mol Cell 2005
788
15

Brd4 binds to active enhancers to control cell identity gene induction in adipogenesis and myogenesis.
Ji-Eun Lee, Young-Kwon Park, Sarah Park, Younghoon Jang, Nicholas Waring, Anup Dey, Keiko Ozato, Binbin Lai, Weiqun Peng, Kai Ge. Nat Commun 2017
99
15

The Brd4 extraterminal domain confers transcription activation independent of pTEFb by recruiting multiple proteins, including NSD3.
Shaila Rahman, Mathew E Sowa, Matthias Ottinger, Jennifer A Smith, Yang Shi, J Wade Harper, Peter M Howley. Mol Cell Biol 2011
339
15

NF-κB directs dynamic super enhancer formation in inflammation and atherogenesis.
Jonathan D Brown, Charles Y Lin, Qiong Duan, Gabriel Griffin, Alexander Federation, Ronald M Paranal, Steven Bair, Gail Newton, Andrew Lichtman, Andrew Kung,[...]. Mol Cell 2014
381
14

Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia.
Mark A Dawson, Rab K Prinjha, Antje Dittmann, George Giotopoulos, Marcus Bantscheff, Wai-In Chan, Samuel C Robson, Chun-wa Chung, Carsten Hopf, Mikhail M Savitski,[...]. Nature 2011
14


BRD4 assists elongation of both coding and enhancer RNAs by interacting with acetylated histones.
Tomohiko Kanno, Yuka Kanno, Gary LeRoy, Eric Campos, Hong-Wei Sun, Stephen R Brooks, Golnaz Vahedi, Tom D Heightman, Benjamin A Garcia, Danny Reinberg,[...]. Nat Struct Mol Biol 2014
182
14

RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia.
Johannes Zuber, Junwei Shi, Eric Wang, Amy R Rappaport, Harald Herrmann, Edward A Sison, Daniel Magoon, Jun Qi, Katharina Blatt, Mark Wunderlich,[...]. Nature 2011
12

Targeting MYC dependence in cancer by inhibiting BET bromodomains.
Jennifer A Mertz, Andrew R Conery, Barbara M Bryant, Peter Sandy, Srividya Balasubramanian, Deanna A Mele, Louise Bergeron, Robert J Sims. Proc Natl Acad Sci U S A 2011
805
12

BET bromodomains mediate transcriptional pause release in heart failure.
Priti Anand, Jonathan D Brown, Charles Y Lin, Jun Qi, Rongli Zhang, Pedro Calderon Artero, M Amer Alaiti, Jace Bullard, Kareem Alazem, Kenneth B Margulies,[...]. Cell 2013
246
12

Selective inhibition of the BD2 bromodomain of BET proteins in prostate cancer.
Emily J Faivre, Keith F McDaniel, Daniel H Albert, Srinivasa R Mantena, Joshua P Plotnik, Denise Wilcox, Lu Zhang, Mai H Bui, George S Sheppard, Le Wang,[...]. Nature 2020
146
12

Conserved P-TEFb-interacting domain of BRD4 inhibits HIV transcription.
Dwayne A Bisgrove, Tokameh Mahmoudi, Peter Henklein, Eric Verdin. Proc Natl Acad Sci U S A 2007
264
12


The double bromodomain protein Brd4 binds to acetylated chromatin during interphase and mitosis.
Anup Dey, Farideh Chitsaz, Asim Abbasi, Tom Misteli, Keiko Ozato. Proc Natl Acad Sci U S A 2003
465
12

Selective targeting of BD1 and BD2 of the BET proteins in cancer and immunoinflammation.
Omer Gilan, Inmaculada Rioja, Kathy Knezevic, Matthew J Bell, Miriam M Yeung, Nicola R Harker, Enid Y N Lam, Chun-Wa Chung, Paul Bamborough, Massimo Petretich,[...]. Science 2020
151
12

BRD4 Couples NF-κB/RelA with Airway Inflammation and the IRF-RIG-I Amplification Loop in Respiratory Syncytial Virus Infection.
Bing Tian, Jun Yang, Yingxin Zhao, Teodora Ivanciuc, Hong Sun, Roberto P Garofalo, Allan R Brasier. J Virol 2017
51
21

Selective Antagonists of the Bronchiolar Epithelial NF-κB-Bromodomain-Containing Protein 4 Pathway in Viral-Induced Airway Inflammation.
Bing Tian, Zhiqing Liu, Jun Yang, Hong Sun, Yingxin Zhao, Maki Wakamiya, Haiying Chen, Erik Rytting, Jia Zhou, Allan R Brasier. Cell Rep 2018
30
36

Drug Discovery Targeting Bromodomain-Containing Protein 4.
Zhiqing Liu, Pingyuan Wang, Haiying Chen, Eric A Wold, Bing Tian, Allan R Brasier, Jia Zhou. J Med Chem 2017
161
11


BET domain co-regulators in obesity, inflammation and cancer.
Anna C Belkina, Gerald V Denis. Nat Rev Cancer 2012
468
11

BRD4 Inhibition Is Synthetic Lethal with PARP Inhibitors through the Induction of Homologous Recombination Deficiency.
Chaoyang Sun, Jun Yin, Yong Fang, Jian Chen, Kang Jin Jeong, Xiaohua Chen, Christopher P Vellano, Zhenlin Ju, Wei Zhao, Dong Zhang,[...]. Cancer Cell 2018
143
11

Bromodomains: a new target class for drug development.
Andrea G Cochran, Andrew R Conery, Robert J Sims. Nat Rev Drug Discov 2019
185
11

Targeting bromodomains: epigenetic readers of lysine acetylation.
Panagis Filippakopoulos, Stefan Knapp. Nat Rev Drug Discov 2014
828
11

Brd4 marks select genes on mitotic chromatin and directs postmitotic transcription.
Anup Dey, Akira Nishiyama, Tatiana Karpova, James McNally, Keiko Ozato. Mol Biol Cell 2009
221
11

Coactivator condensation at super-enhancers links phase separation and gene control.
Benjamin R Sabari, Alessandra Dall'Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, Brian J Abraham, Nancy M Hannett, Alicia V Zamudio, John C Manteiga,[...]. Science 2018
911
11

Synergistic action of master transcription factors controls epithelial-to-mesenchymal transition.
Hongyuan Chang, Yuwei Liu, Mengzhu Xue, Haiyue Liu, Shaowei Du, Liwen Zhang, Peng Wang. Nucleic Acids Res 2016
78
12

RVX-208, an inhibitor of BET transcriptional regulators with selectivity for the second bromodomain.
Sarah Picaud, Christopher Wells, Ildiko Felletar, Deborah Brotherton, Sarah Martin, Pavel Savitsky, Beatriz Diez-Dacal, Martin Philpott, Chas Bountra, Hannah Lingard,[...]. Proc Natl Acad Sci U S A 2013
284
10

Super-enhancers in the control of cell identity and disease.
Denes Hnisz, Brian J Abraham, Tong Ihn Lee, Ashley Lau, Violaine Saint-André, Alla A Sigova, Heather A Hoke, Richard A Young. Cell 2013
10

Growth and early postimplantation defects in mice deficient for the bromodomain-containing protein Brd4.
Denis Houzelstein, Simon L Bullock, Denise E Lynch, Elena F Grigorieva, Valerie A Wilson, Rosa S P Beddington. Mol Cell Biol 2002
213
10

Master transcription factors and mediator establish super-enhancers at key cell identity genes.
Warren A Whyte, David A Orlando, Denes Hnisz, Brian J Abraham, Charles Y Lin, Michael H Kagey, Peter B Rahl, Tong Ihn Lee, Richard A Young. Cell 2013
10

Bromodomain: an acetyl-lysine binding domain.
Lei Zeng, Ming Ming Zhou. FEBS Lett 2002
521
10

Distinct Roles of Brd2 and Brd4 in Potentiating the Transcriptional Program for Th17 Cell Differentiation.
Ka Lung Cheung, Fan Zhang, Anbalagan Jaganathan, Rajal Sharma, Qiang Zhang, Tsuyoshi Konuma, Tong Shen, June-Yong Lee, Chunyan Ren, Chih-Hung Chen,[...]. Mol Cell 2017
74
13

The bromodomain protein Brd4 insulates chromatin from DNA damage signalling.
Scott R Floyd, Michael E Pacold, Qiuying Huang, Scott M Clarke, Fred C Lam, Ian G Cannell, Bryan D Bryson, Jonathan Rameseder, Michael J Lee, Emily J Blake,[...]. Nature 2013
202
10

Small-molecule inhibition of BRDT for male contraception.
Martin M Matzuk, Michael R McKeown, Panagis Filippakopoulos, Qinglei Li, Lang Ma, Julio E Agno, Madeleine E Lemieux, Sarah Picaud, Richard N Yu, Jun Qi,[...]. Cell 2012
257
10

Phospho switch triggers Brd4 chromatin binding and activator recruitment for gene-specific targeting.
Shwu-Yuan Wu, A-Young Lee, Hsien-Tsung Lai, Hong Zhang, Cheng-Ming Chiang. Mol Cell 2013
204
10


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.