A citation-based method for searching scientific literature

Deepa Hammaker, John W Whitaker, Keisuke Maeshima, David L Boyle, Anna-Karin H Ekwall, Wei Wang, Gary S Firestein. Arthritis Rheumatol 2016
Times Cited: 31







List of co-cited articles
271 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The Rheumatoid Arthritis Risk Gene LBH Regulates Growth in Fibroblast-like Synoviocytes.
Anna-Karin H Ekwall, John W Whitaker, Deepa Hammaker, William D Bugbee, Wei Wang, Gary S Firestein. Arthritis Rheumatol 2015
40
38

DNA Methylome Signature in Synoviocytes From Patients With Early Rheumatoid Arthritis Compared to Synoviocytes From Patients With Longstanding Rheumatoid Arthritis.
Rizi Ai, John W Whitaker, David L Boyle, Paul Peter Tak, Danielle M Gerlag, Wei Wang, Gary S Firestein. Arthritis Rheumatol 2015
52
35


Synovial fibroblasts spread rheumatoid arthritis to unaffected joints.
Stephanie Lefèvre, Anette Knedla, Christoph Tennie, Andreas Kampmann, Christina Wunrau, Robert Dinser, Adelheid Korb, Eva-Maria Schnäker, Ingo H Tarner, Paul D Robbins,[...]. Nat Med 2009
394
32

DNA methylome signature in rheumatoid arthritis.
Kazuhisa Nakano, John W Whitaker, David L Boyle, Wei Wang, Gary S Firestein. Ann Rheum Dis 2013
230
32

Genetics of rheumatoid arthritis contributes to biology and drug discovery.
Yukinori Okada, Di Wu, Gosia Trynka, Towfique Raj, Chikashi Terao, Katsunori Ikari, Yuta Kochi, Koichiro Ohmura, Akari Suzuki, Shinji Yoshida,[...]. Nature 2014
29

An imprinted rheumatoid arthritis methylome signature reflects pathogenic phenotype.
John W Whitaker, Robert Shoemaker, David L Boyle, Josh Hillman, David Anderson, Wei Wang, Gary S Firestein. Genome Med 2013
78
29

Regulation of DNA methylation in rheumatoid arthritis synoviocytes.
Kazuhisa Nakano, David L Boyle, Gary S Firestein. J Immunol 2013
89
25

Joint-specific DNA methylation and transcriptome signatures in rheumatoid arthritis identify distinct pathogenic processes.
Rizi Ai, Deepa Hammaker, David L Boyle, Rachel Morgan, Alice M Walsh, Shicai Fan, Gary S Firestein, Wei Wang. Nat Commun 2016
78
25

Integrative omics analysis of rheumatoid arthritis identifies non-obvious therapeutic targets.
John W Whitaker, David L Boyle, Beatrix Bartok, Scott T Ball, Steffen Gay, Wei Wang, Gary S Firestein. PLoS One 2015
36
25

Fibroblast-like synoviocytes: key effector cells in rheumatoid arthritis.
Beatrix Bartok, Gary S Firestein. Immunol Rev 2010
25

Abnormal PTPN11 enhancer methylation promotes rheumatoid arthritis fibroblast-like synoviocyte aggressiveness and joint inflammation.
Keisuke Maeshima, Stephanie M Stanford, Deepa Hammaker, Cristiano Sacchetti, Li-Fan Zeng, Rizi Ai, Vida Zhang, David L Boyle, German R Aleman Muench, Gen-Sheng Feng,[...]. JCI Insight 2016
29
24

Epigenetically-driven anatomical diversity of synovial fibroblasts guides joint-specific fibroblast functions.
Mojca Frank-Bertoncelj, Michelle Trenkmann, Kerstin Klein, Emmanuel Karouzakis, Hubert Rehrauer, Anna Bratus, Christoph Kolling, Maria Armaka, Andrew Filer, Beat A Michel,[...]. Nat Commun 2017
85
22

Comprehensive epigenetic landscape of rheumatoid arthritis fibroblast-like synoviocytes.
Rizi Ai, Teresina Laragione, Deepa Hammaker, David L Boyle, Andre Wildberg, Keisuke Maeshima, Emanuele Palescandolo, Vinod Krishna, David Pocalyko, John W Whitaker,[...]. Nat Commun 2018
74
22

Altered expression of microRNA-203 in rheumatoid arthritis synovial fibroblasts and its role in fibroblast activation.
Joanna Stanczyk, Caroline Ospelt, Emmanuel Karouzakis, Andrew Filer, Karim Raza, Christoph Kolling, Renate Gay, Christopher D Buckley, Paul P Tak, Steffen Gay,[...]. Arthritis Rheum 2011
230
19


Epigenome analysis reveals TBX5 as a novel transcription factor involved in the activation of rheumatoid arthritis synovial fibroblasts.
Emmanuel Karouzakis, Michelle Trenkmann, Renate E Gay, Beat A Michel, Steffen Gay, Michel Neidhart. J Immunol 2014
38
19

Inflammatory cytokines epigenetically regulate rheumatoid arthritis fibroblast-like synoviocyte activation by suppressing HDAC5 expression.
Chiara Angiolilli, Aleksander M Grabiec, Bradley S Ferguson, Caroline Ospelt, Beatriz Malvar Fernandez, Inge E van Es, Lisa G M van Baarsen, Steffen Gay, Timothy A McKinsey, Paul P Tak,[...]. Ann Rheum Dis 2016
53
19

DNA hypomethylation in rheumatoid arthritis synovial fibroblasts.
Emmanuel Karouzakis, Renate E Gay, Beat A Michel, Steffen Gay, Michel Neidhart. Arthritis Rheum 2009
200
19

Histone Methylation and STAT-3 Differentially Regulate Interleukin-6-Induced Matrix Metalloproteinase Gene Activation in Rheumatoid Arthritis Synovial Fibroblasts.
Yasuto Araki, Takuma Tsuzuki Wada, Yoshimi Aizaki, Kojiro Sato, Kazuhiro Yokota, Kenta Fujimoto, Yoon-Taek Kim, Hiromi Oda, Riki Kurokawa, Toshihide Mimura. Arthritis Rheumatol 2016
48
19

Genetic and epigenetic fine mapping of causal autoimmune disease variants.
Kyle Kai-How Farh, Alexander Marson, Jiang Zhu, Markus Kleinewietfeld, William J Housley, Samantha Beik, Noam Shoresh, Holly Whitton, Russell J H Ryan, Alexander A Shishkin,[...]. Nature 2015
19

The American Rheumatism Association 1987 revised criteria for the classification of rheumatoid arthritis.
F C Arnett, S M Edworthy, D A Bloch, D J McShane, J F Fries, N S Cooper, L A Healey, S R Kaplan, M H Liang, H S Luthra. Arthritis Rheum 1988
19

Regulation of the Cell Cycle and Inflammatory Arthritis by the Transcription Cofactor LBH Gene.
Shinji Matsuda, Deepa Hammaker, Katharyn Topolewski, Karoline J Briegel, David L Boyle, Steven Dowdy, Wei Wang, Gary S Firestein. J Immunol 2017
14
42

Analysis of early changes in DNA methylation in synovial fibroblasts of RA patients before diagnosis.
Emmanuel Karouzakis, Karim Raza, Christoph Kolling, Christopher D Buckley, Steffen Gay, Andrew Filer, Caroline Ospelt. Sci Rep 2018
35
19

Expression and function of histone deacetylases in rheumatoid arthritis synovial fibroblasts.
Marika Horiuchi, Akio Morinobu, Takaaki Chin, Yoshitada Sakai, Masahiro Kurosaka, Shunichi Kumagai. J Rheumatol 2009
76
16

Rheumatoid synovial fibroblasts differentiate into distinct subsets in the presence of cytokines and cartilage.
Adam P Croft, Amy J Naylor, Jennifer L Marshall, Debbie L Hardie, Birgit Zimmermann, Jason Turner, Guillaume Desanti, Holly Adams, Adrian I Yemm, Ulf Müller-Ladner,[...]. Arthritis Res Ther 2016
63
16

Synovial fibroblasts of patients with rheumatoid arthritis attach to and invade normal human cartilage when engrafted into SCID mice.
U Müller-Ladner, J Kriegsmann, B N Franklin, S Matsumoto, T Geiler, R E Gay, S Gay. Am J Pathol 1996
474
16


Down-regulation of microRNA-34a* in rheumatoid arthritis synovial fibroblasts promotes apoptosis resistance.
Fabienne Niederer, Michelle Trenkmann, Caroline Ospelt, Emmanuel Karouzakis, Michel Neidhart, Joanna Stanczyk, Christoph Kolling, Renate E Gay, Michael Detmar, Steffen Gay,[...]. Arthritis Rheum 2012
104
16

Identification of novel markers in rheumatoid arthritis through integrated analysis of DNA methylation and microRNA expression.
Lorenzo de la Rica, José M Urquiza, David Gómez-Cabrero, Abul B M M K Islam, Nuria López-Bigas, Jesper Tegnér, René E M Toes, Esteban Ballestar. J Autoimmun 2013
118
16

Prolonged tumor necrosis factor α primes fibroblast-like synoviocytes in a gene-specific manner by altering chromatin.
Christopher Sohn, Angela Lee, Yu Qiao, Konstantinos Loupasakis, Lionel B Ivashkiv, George D Kalliolias. Arthritis Rheumatol 2015
46
16

Tumor necrosis factor α induces sustained signaling and a prolonged and unremitting inflammatory response in rheumatoid arthritis synovial fibroblasts.
Angela Lee, Yu Qiao, Galina Grigoriev, Janice Chen, Kyung-Hyun Park-Min, Sung Ho Park, Lionel B Ivashkiv, George D Kalliolias. Arthritis Rheum 2013
86
16

Histone deacetylase 3 regulates the inflammatory gene expression programme of rheumatoid arthritis fibroblast-like synoviocytes.
Chiara Angiolilli, Pawel A Kabala, Aleksander M Grabiec, Iris M Van Baarsen, Bradley S Ferguson, Samuel García, Beatriz Malvar Fernandez, Timothy A McKinsey, Paul P Tak, Gianluca Fossati,[...]. Ann Rheum Dis 2017
84
16

Rheumatoid Arthritis Naive T Cells Share Hypermethylation Sites With Synoviocytes.
Brooke Rhead, Calliope Holingue, Michael Cole, Xiaorong Shao, Hong L Quach, Diana Quach, Khooshbu Shah, Elizabeth Sinclair, John Graf, Thomas Link,[...]. Arthritis Rheumatol 2017
30
16

Immunopathogenesis of Rheumatoid Arthritis.
Gary S Firestein, Iain B McInnes. Immunity 2017
472
16

Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry.
Fan Zhang, Kevin Wei, Kamil Slowikowski, Chamith Y Fonseka, Deepak A Rao, Stephen Kelly, Susan M Goodman, Darren Tabechian, Laura B Hughes, Karen Salomon-Escoto,[...]. Nat Immunol 2019
402
16

Histone deacetylase/acetylase activity in total synovial tissue derived from rheumatoid arthritis and osteoarthritis patients.
Lars C Huber, Matthias Brock, Hossein Hemmatazad, Olivier T Giger, Falk Moritz, Michelle Trenkmann, Jörg H W Distler, Renate E Gay, Christoph Kolling, Holger Moch,[...]. Arthritis Rheum 2007
142
12

IL-6 and matrix metalloproteinase-1 are regulated by the cyclin-dependent kinase inhibitor p21 in synovial fibroblasts.
Harris Perlman, Kathleen Bradley, Hongtao Liu, Shawn Cole, Eli Shamiyeh, Roy C Smith, Kenneth Walsh, Stefano Fiore, Alisa E Koch, Gary S Firestein,[...]. J Immunol 2003
77
12

DNA methylation regulates the expression of CXCL12 in rheumatoid arthritis synovial fibroblasts.
E Karouzakis, Y Rengel, A Jüngel, C Kolling, R E Gay, B A Michel, P P Tak, S Gay, M Neidhart, C Ospelt. Genes Immun 2011
82
12

Presentation of arthritogenic peptide to antigen-specific T cells by fibroblast-like synoviocytes.
Chinh N Tran, Michael J Davis, Laura A Tesmer, Judith L Endres, Christopher D Motyl, Craig Smuda, Emily C Somers, Kevin C Chung, Andrew G Urquhart, Steven K Lundy,[...]. Arthritis Rheum 2007
70
12

DNA methylation: superior or subordinate in the epigenetic hierarchy?
Bilian Jin, Yajun Li, Keith D Robertson. Genes Cancer 2011
329
12

Safety and efficacy of an oral histone deacetylase inhibitor in systemic-onset juvenile idiopathic arthritis.
Jelena Vojinovic, Nemanja Damjanov, Carmine D'Urzo, Antonio Furlan, Gordana Susic, Srdjan Pasic, Nicola Iagaru, Mariana Stefan, Charles A Dinarello. Arthritis Rheum 2011
161
12

Increased activity and expression of histone deacetylase 1 in relation to tumor necrosis factor-alpha in synovial tissue of rheumatoid arthritis.
Tomoko Kawabata, Keiichiro Nishida, Koji Takasugi, Hiroko Ogawa, Kenei Sada, Yasutaka Kadota, Junko Inagaki, Satoshi Hirohata, Yoshifumi Ninomiya, Hirofumi Makino. Arthritis Res Ther 2010
103
12

A novel NF-κB/YY1/microRNA-10a regulatory circuit in fibroblast-like synoviocytes regulates inflammation in rheumatoid arthritis.
Nan Mu, Jintao Gu, Tonglie Huang, Cun Zhang, Zhen Shu, Meng Li, Qiang Hao, Weina Li, Wangqian Zhang, Jinkang Zhao,[...]. Sci Rep 2016
89
12

Protein tyrosine phosphatase expression profile of rheumatoid arthritis fibroblast-like synoviocytes: a novel role of SH2 domain-containing phosphatase 2 as a modulator of invasion and survival.
Stephanie M Stanford, Michael F Maestre, Amanda M Campbell, Beatrix Bartok, William B Kiosses, David L Boyle, Heather A Arnett, Tomas Mustelin, Gary S Firestein, Nunzio Bottini. Arthritis Rheum 2013
38
12

Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus.
Biola M Javierre, Agustin F Fernandez, Julia Richter, Fatima Al-Shahrour, J Ignacio Martin-Subero, Javier Rodriguez-Ubreva, Maria Berdasco, Mario F Fraga, Terrance P O'Hanlon, Lisa G Rider,[...]. Genome Res 2010
431
12

Cadherin-11 in synovial lining formation and pathology in arthritis.
David M Lee, Hans P Kiener, Sandeep K Agarwal, Erika H Noss, Gerald F M Watts, Osamu Chisaka, Masatoshi Takeichi, Michael B Brenner. Science 2007
277
12

DNA methylation at diagnosis is associated with response to disease-modifying drugs in early rheumatoid arthritis.
John R Glossop, Nicola B Nixon, Richard D Emes, Julius Sim, Jon C Packham, Derek L Mattey, William E Farrell, Anthony A Fryer. Epigenomics 2017
26
15

Assessment of global DNA methylation in peripheral blood cell subpopulations of early rheumatoid arthritis before and after methotrexate.
María C de Andres, Eva Perez-Pampin, Manuel Calaza, Francisco J Santaclara, Ignacio Ortea, Juan J Gomez-Reino, Antonio Gonzalez. Arthritis Res Ther 2015
82
12

Differential Methylation as a Biomarker of Response to Etanercept in Patients With Rheumatoid Arthritis.
Darren Plant, Amy Webster, Nisha Nair, James Oliver, Samantha L Smith, Steven Eyre, Kimme L Hyrich, Anthony G Wilson, Ann W Morgan, John D Isaacs,[...]. Arthritis Rheumatol 2016
43
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.