A citation-based method for searching scientific literature

Michal Krzyszton, Monika Zakrzewska-Placzek, Michal Koper, Joanna Kufel. Enzymes 2012
Times Cited: 4







List of co-cited articles
16 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes.
Kira Glover-Cutter, Soojin Kim, Joaquin Espinosa, David L Bentley. Nat Struct Mol Biol 2008
236
50


The many pathways of RNA degradation.
Jonathan Houseley, David Tollervey. Cell 2009
669
50

A link between mRNA turnover and RNA interference in Arabidopsis.
S Gazzani, T Lawrenson, C Woodward, D Headon, R Sablowski. Science 2004
211
50

The 5' → 3' exoribonuclease XRN1/Pacman and its functions in cellular processes and development.
Christopher Iain Jones, Maria Vasilyevna Zabolotskaya, Sarah Faith Newbury. Wiley Interdiscip Rev RNA 2012
70
50

AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets.
Frédéric F Souret, James P Kastenmayer, Pamela J Green. Mol Cell 2004
241
50


Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors.
Isabelle Gy, Virginie Gasciolli, Dominique Lauressergues, Jean-Benoit Morel, Julie Gombert, Florence Proux, Caroline Proux, Hervé Vaucheret, Allison C Mallory. Plant Cell 2007
193
50

Unravelling the means to an end: RNA polymerase II transcription termination.
Jason N Kuehner, Erika L Pearson, Claire Moore. Nat Rev Mol Cell Biol 2011
174
50

The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.
Minkyu Kim, Nevan J Krogan, Lidia Vasiljeva, Oliver J Rando, Eduard Nedea, Jack F Greenblatt, Stephen Buratowski. Nature 2004
358
50

The enzymes and control of eukaryotic mRNA turnover.
Roy Parker, Haiwei Song. Nat Struct Mol Biol 2004
612
50



Transcription termination by nuclear RNA polymerases.
Patricia Richard, James L Manley. Genes Dev 2009
226
50

mRNA decapping factors and the exonuclease Xrn2 function in widespread premature termination of RNA polymerase II transcription.
Kris Brannan, Hyunmin Kim, Benjamin Erickson, Kira Glover-Cutter, Soojin Kim, Nova Fong, Lauren Kiemele, Kirk Hansen, Richard Davis, Jens Lykke-Andersen,[...]. Mol Cell 2012
141
50


The yeast rapid tRNA decay pathway primarily monitors the structural integrity of the acceptor and T-stems of mature tRNA.
Joseph M Whipple, Elizabeth A Lane, Irina Chernyakov, Sonia D'Silva, Eric M Phizicky. Genes Dev 2011
83
25

Nuclear pre-mRNA decapping and 5' degradation in yeast require the Lsm2-8p complex.
Joanna Kufel, Cecile Bousquet-Antonelli, Jean D Beggs, David Tollervey. Mol Cell Biol 2004
51
25


The 5' end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site.
Y Henry, H Wood, J P Morrissey, E Petfalski, S Kearsey, D Tollervey. EMBO J 1994
259
25

Staufen- and FMRP-containing neuronal RNPs are structurally and functionally related to somatic P bodies.
Scott A Barbee, Patricia S Estes, Anne-Marie Cziko, Jens Hillebrand, Rene A Luedeman, Jeff M Coller, Nick Johnson, Iris C Howlett, Cuiyun Geng, Ryu Ueda,[...]. Neuron 2006
264
25


A novel class of bacteria-induced small RNAs in Arabidopsis.
Surekha Katiyar-Agarwal, Shang Gao, Adam Vivian-Smith, Hailing Jin. Genes Dev 2007
208
25

Cloning and characterization of human Sep1 (hSEP1) gene and cytoplasmic localization of its product.
Y Sato, A Shimamoto, T Shobuike, M Sugimoto, H Ikeda, S Kuroda, Y Furuichi. DNA Res 1998
5
25

Cutting the nonsense: the degradation of PTC-containing mRNAs.
Pamela Nicholson, Oliver Mühlemann. Biochem Soc Trans 2010
83
25

DcpS can act in the 5'-3' mRNA decay pathway in addition to the 3'-5' pathway.
Erwin van Dijk, Hervé Le Hir, Bertrand Séraphin. Proc Natl Acad Sci U S A 2003
65
25

Loss of XRN4 function can trigger cosuppression in a sequence-dependent manner.
Makoto Hayashi, Chieko Nanba, Miyuki Saito, Maki Kondo, Atsushi Takeda, Yuichiro Watanabe, Mikio Nishimura. Plant Cell Physiol 2012
8
25


A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates.
V I Bashkirov, H Scherthan, J A Solinger, J M Buerstedde, W D Heyer. J Cell Biol 1997
262
25

Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms.
Tracy Nissan, Purusharth Rajyaguru, Meipei She, Haiwei Song, Roy Parker. Mol Cell 2010
147
25

P-bodies react to stress and nonsense.
Ivone Bruno, Miles F Wilkinson. Cell 2006
31
25

Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function.
Xiaoming Zhang, Jing Xia, Yifan E Lii, Blanca E Barrera-Figueroa, Xuefeng Zhou, Shang Gao, Lu Lu, Dongdong Niu, Zheng Chen, Christy Leung,[...]. Genome Biol 2012
76
25

P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.
Carolyn J Decker, Roy Parker. Cold Spring Harb Perspect Biol 2012
381
25

The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements.
Devi Mukherjee, Min Gao, J Patrick O'Connor, Reinout Raijmakers, Ger Pruijn, Carol S Lutz, Jeffrey Wilusz. EMBO J 2002
290
25

The human homolog of yeast SEP1 is a novel candidate tumor suppressor gene in osteogenic sarcoma.
Kunbo Zhang, Norbert Dion, Bruno Fuchs, Tim Damron, Steven Gitelis, Ronald Irwin, Mary O'Connor, Herbert Schwartz, Sean P Scully, Michael G Rock,[...]. Gene 2002
19
25

Identification of a quality-control mechanism for mRNA 5'-end capping.
Xinfu Jiao, Song Xiang, Chanseok Oh, Charles E Martin, Liang Tong, Megerditch Kiledjian. Nature 2010
108
25

Arabidopsis thaliana XRN2 is required for primary cleavage in the pre-ribosomal RNA.
Monika Zakrzewska-Placzek, Frederic F Souret, Grzegorz J Sobczyk, Pamela J Green, Joanna Kufel. Nucleic Acids Res 2010
72
25



The highways and byways of mRNA decay.
Nicole L Garneau, Jeffrey Wilusz, Carol J Wilusz. Nat Rev Mol Cell Biol 2007
863
25

Processing of the precursors to small nucleolar RNAs and rRNAs requires common components.
E Petfalski, T Dandekar, Y Henry, D Tollervey. Mol Cell Biol 1998
168
25

MicroRNA-directed cleavage of HOXB8 mRNA.
Soraya Yekta, I-Hung Shih, David P Bartel. Science 2004
25


Microprocessor, Setx, Xrn2, and Rrp6 co-operate to induce premature termination of transcription by RNAPII.
Alexandre Wagschal, Emilie Rousset, Poornima Basavarajaiah, Xavier Contreras, Alex Harwig, Sabine Laurent-Chabalier, Mirai Nakamura, Xin Chen, Ke Zhang, Oussama Meziane,[...]. Cell 2012
124
25

ETHYLENE-INSENSITIVE5 encodes a 5'-->3' exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2.
Gabriela Olmedo, Hongwei Guo, Brian D Gregory, Saeid D Nourizadeh, Laura Aguilar-Henonin, Hongjiang Li, Fengying An, Plinio Guzman, Joseph R Ecker. Proc Natl Acad Sci U S A 2006
103
25

TERRA: telomeric repeat-containing RNA.
Brian Luke, Joachim Lingner. EMBO J 2009
177
25

Origins and Mechanisms of miRNAs and siRNAs.
Richard W Carthew, Erik J Sontheimer. Cell 2009
25

Functional cloning of BRF1, a regulator of ARE-dependent mRNA turnover.
Georg Stoecklin, Marco Colombi, Ines Raineri, Sabrina Leuenberger, Michel Mallaun, Martin Schmidlin, Brigitte Gross, Min Lu, Toshio Kitamura, Christoph Moroni. EMBO J 2002
175
25




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.