A citation-based method for searching scientific literature

Lisa Traunmüller, Andrea M Gomez, Thi-Minh Nguyen, Peter Scheiffele. Science 2016
Times Cited: 70







List of co-cited articles
708 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


SAM68 regulates neuronal activity-dependent alternative splicing of neurexin-1.
Takatoshi Iijima, Karen Wu, Harald Witte, Yoko Hanno-Iijima, Timo Glatter, Stéphane Richard, Peter Scheiffele. Cell 2011
178
40

Presynaptic neurexin-3 alternative splicing trans-synaptically controls postsynaptic AMPA receptor trafficking.
Jason Aoto, David C Martinelli, Robert C Malenka, Katsuhiko Tabuchi, Thomas C Südhof. Cell 2013
173
32

The tissue-specific RNA binding protein T-STAR controls regional splicing patterns of neurexin pre-mRNAs in the brain.
Ingrid Ehrmann, Caroline Dalgliesh, Yilei Liu, Marina Danilenko, Moira Crosier, Lynn Overman, Helen M Arthur, Susan Lindsay, Gavin J Clowry, Julian P Venables,[...]. PLoS Genet 2013
57
36

Trans-synaptic interaction of GluRdelta2 and Neurexin through Cbln1 mediates synapse formation in the cerebellum.
Takeshi Uemura, Sung-Jin Lee, Misato Yasumura, Tomonori Takeuchi, Tomoyuki Yoshida, Moonjin Ra, Ryo Taguchi, Kenji Sakimura, Masayoshi Mishina. Cell 2010
310
25

The neurogenetics of alternative splicing.
Celine K Vuong, Douglas L Black, Sika Zheng. Nat Rev Neurosci 2016
127
25

Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing.
Barbara Treutlein, Ozgun Gokce, Stephen R Quake, Thomas C Südhof. Proc Natl Acad Sci U S A 2014
157
24

Neuronal cell type-specific alternative splicing is regulated by the KH domain protein SLM1.
Takatoshi Iijima, Yoko Iijima, Harald Witte, Peter Scheiffele. J Cell Biol 2014
53
32

An alternative splicing switch shapes neurexin repertoires in principal neurons versus interneurons in the mouse hippocampus.
Thi-Minh Nguyen, Dietmar Schreiner, Le Xiao, Lisa Traunmüller, Caroline Bornmann, Peter Scheiffele. Elife 2016
42
40


A splice code for trans-synaptic cell adhesion mediated by binding of neuroligin 1 to alpha- and beta-neurexins.
Antony A Boucard, Alexander A Chubykin, Davide Comoletti, Palmer Taylor, Thomas C Südhof. Neuron 2005
333
21



Targeted combinatorial alternative splicing generates brain region-specific repertoires of neurexins.
Dietmar Schreiner, Thi-Minh Nguyen, Giancarlo Russo, Steffen Heber, Andrea Patrignani, Erik Ahrné, Peter Scheiffele. Neuron 2014
104
21

Single-Cell mRNA Profiling Reveals Cell-Type-Specific Expression of Neurexin Isoforms.
Marc V Fuccillo, Csaba Földy, Özgün Gökce, Patrick E Rothwell, Gordon L Sun, Robert C Malenka, Thomas C Südhof. Neuron 2015
85
21

Alternative isoform regulation in human tissue transcriptomes.
Eric T Wang, Rickard Sandberg, Shujun Luo, Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F Kingsmore, Gary P Schroth, Christopher B Burge. Nature 2008
21


Alpha-neurexins couple Ca2+ channels to synaptic vesicle exocytosis.
Markus Missler, Weiqi Zhang, Astrid Rohlmann, Gunnar Kattenstroth, Robert E Hammer, Kurt Gottmann, Thomas C Südhof. Nature 2003
446
17


LRRTM2 functions as a neurexin ligand in promoting excitatory synapse formation.
Jaewon Ko, Marc V Fuccillo, Robert C Malenka, Thomas C Südhof. Neuron 2009
245
17

LRRTMs and neuroligins bind neurexins with a differential code to cooperate in glutamate synapse development.
Tabrez J Siddiqui, Raika Pancaroglu, Yunhee Kang, Amanda Rooyakkers, Ann Marie Craig. J Neurosci 2010
191
17


Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.
Qun Pan, Ofer Shai, Leo J Lee, Brendan J Frey, Benjamin J Blencowe. Nat Genet 2008
17

The evolutionary landscape of alternative splicing in vertebrate species.
Nuno L Barbosa-Morais, Manuel Irimia, Qun Pan, Hui Y Xiong, Serge Gueroussov, Leo J Lee, Valentina Slobodeniuc, Claudia Kutter, Stephen Watt, Recep Colak,[...]. Science 2012
538
15

Activity-induced histone modifications govern Neurexin-1 mRNA splicing and memory preservation.
Xinlu Ding, Sanxiong Liu, Miaomiao Tian, Wenhao Zhang, Tao Zhu, Dongdong Li, Jiawei Wu, HaiTeng Deng, Yichang Jia, Wei Xie,[...]. Nat Neurosci 2017
46
23

Mouse neurexin-1alpha deletion causes correlated electrophysiological and behavioral changes consistent with cognitive impairments.
Mark R Etherton, Cory A Blaiss, Craig M Powell, Thomas C Südhof. Proc Natl Acad Sci U S A 2009
284
14

Neurexins induce differentiation of GABA and glutamate postsynaptic specializations via neuroligins.
Ethan R Graf, XueZhao Zhang, Shan-Xue Jin, Michael W Linhoff, Ann Marie Craig. Cell 2004
663
14


Cell-Type-Specific Alternative Splicing Governs Cell Fate in the Developing Cerebral Cortex.
Xiaochang Zhang, Ming Hui Chen, Xuebing Wu, Andrew Kodani, Jean Fan, Ryan Doan, Manabu Ozawa, Jacqueline Ma, Nobuaki Yoshida, Jeremy F Reiter,[...]. Cell 2016
128
14

A highly conserved program of neuronal microexons is misregulated in autistic brains.
Manuel Irimia, Robert J Weatheritt, Jonathan D Ellis, Neelroop N Parikshak, Thomas Gonatopoulos-Pournatzis, Mariana Babor, Mathieu Quesnel-Vallières, Javier Tapial, Bushra Raj, Dave O'Hanlon,[...]. Cell 2014
273
14


Misregulation of an Activity-Dependent Splicing Network as a Common Mechanism Underlying Autism Spectrum Disorders.
Mathieu Quesnel-Vallières, Zahra Dargaei, Manuel Irimia, Thomas Gonatopoulos-Pournatzis, Joanna Y Ip, Mingkun Wu, Timothy Sterne-Weiler, Shinichi Nakagawa, Melanie A Woodin, Benjamin J Blencowe,[...]. Mol Cell 2016
58
17

LRRTM2 interacts with Neurexin1 and regulates excitatory synapse formation.
Joris de Wit, Emily Sylwestrak, Matthew L O'Sullivan, Stefanie Otto, Katie Tiglio, Jeffrey N Savas, John R Yates, Davide Comoletti, Palmer Taylor, Anirvan Ghosh. Neuron 2009
260
12

Quantitative isoform-profiling of highly diversified recognition molecules.
Dietmar Schreiner, Jovan Simicevic, Erik Ahrné, Alexander Schmidt, Peter Scheiffele. Elife 2015
36
25

The splicing regulator Rbfox2 is required for both cerebellar development and mature motor function.
Lauren T Gehman, Pratap Meera, Peter Stoilov, Lily Shiue, Janelle E O'Brien, Miriam H Meisler, Manuel Ares, Thomas S Otis, Douglas L Black. Genes Dev 2012
132
12

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
12

A SLM2 Feedback Pathway Controls Cortical Network Activity and Mouse Behavior.
Ingrid Ehrmann, Matthew R Gazzara, Vittoria Pagliarini, Caroline Dalgliesh, Mahsa Kheirollahi-Chadegani, Yaobo Xu, Eleonora Cesari, Marina Danilenko, Marie Maclennan, Kate Lowdon,[...]. Cell Rep 2016
12
75

Landscape of ribosome-engaged transcript isoforms reveals extensive neuronal-cell-class-specific alternative splicing programs.
Elisabetta Furlanis, Lisa Traunmüller, Geoffrey Fucile, Peter Scheiffele. Nat Neurosci 2019
36
25

Distinct circuit-dependent functions of presynaptic neurexin-3 at GABAergic and glutamatergic synapses.
Jason Aoto, Csaba Földy, Silviana Maria Ciurea Ilcus, Katsuhiko Tabuchi, Thomas C Südhof. Nat Neurosci 2015
54
14


Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators.
Qinghong Yan, Sebastien M Weyn-Vanhentenryck, Jie Wu, Steven A Sloan, Ye Zhang, Kenian Chen, Jia Qian Wu, Ben A Barres, Chaolin Zhang. Proc Natl Acad Sci U S A 2015
80
11

Functional consequences of developmentally regulated alternative splicing.
Auinash Kalsotra, Thomas A Cooper. Nat Rev Genet 2011
408
11

The splicing regulator PTBP2 controls a program of embryonic splicing required for neuronal maturation.
Qin Li, Sika Zheng, Areum Han, Chia-Ho Lin, Peter Stoilov, Xiang-Dong Fu, Douglas L Black. Elife 2014
87
11

Regulation of alternative splicing by histone modifications.
Reini F Luco, Qun Pan, Kaoru Tominaga, Benjamin J Blencowe, Olivia M Pereira-Smith, Tom Misteli. Science 2010
683
11

Conditional Deletion of All Neurexins Defines Diversity of Essential Synaptic Organizer Functions for Neurexins.
Lulu Y Chen, Man Jiang, Bo Zhang, Ozgun Gokce, Thomas C Südhof. Neuron 2017
82
11

Regulation of Neuronal Differentiation, Function, and Plasticity by Alternative Splicing.
Elisabetta Furlanis, Peter Scheiffele. Annu Rev Cell Dev Biol 2018
43
18


Transsynaptic Modulation of Kainate Receptor Functions by C1q-like Proteins.
Keiko Matsuda, Timotheus Budisantoso, Nikolaos Mitakidis, Yuki Sugaya, Eriko Miura, Wataru Kakegawa, Miwako Yamasaki, Kohtarou Konno, Motokazu Uchigashima, Manabu Abe,[...]. Neuron 2016
84
10

The specific α-neurexin interactor calsyntenin-3 promotes excitatory and inhibitory synapse development.
Katherine L Pettem, Daisaku Yokomaku, Lin Luo, Michael W Linhoff, Tuhina Prasad, Steven A Connor, Tabrez J Siddiqui, Hiroshi Kawabe, Fang Chen, Ling Zhang,[...]. Neuron 2013
87
10


β-Neurexins Control Neural Circuits by Regulating Synaptic Endocannabinoid Signaling.
Garret R Anderson, Jason Aoto, Katsuhiko Tabuchi, Csaba Földy, Jason Covy, Ada Xin Yee, Dick Wu, Sung-Jin Lee, Lu Chen, Robert C Malenka,[...]. Cell 2015
73
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.