A citation-based method for searching scientific literature

Nathan P Lord, Rebecca L Plimpton, Camilla R Sharkey, Anton Suvorov, Jonathan P Lelito, Barry M Willardson, Seth M Bybee. BMC Evol Biol 2016
Times Cited: 23







List of co-cited articles
213 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The evolution of color vision in insects.
A D Briscoe, L Chittka. Annu Rev Entomol 2001
573
69

Extraordinary diversity of visual opsin genes in dragonflies.
Ryo Futahashi, Ryouka Kawahara-Miki, Michiyo Kinoshita, Kazutoshi Yoshitake, Shunsuke Yajima, Kentaro Arikawa, Takema Fukatsu. Proc Natl Acad Sci U S A 2015
92
56

Overcoming the loss of blue sensitivity through opsin duplication in the largest animal group, beetles.
Camilla R Sharkey, M Stanley Fujimoto, Nathan P Lord, Seunggwan Shin, Duane D McKenna, Anton Suvorov, Gavin J Martin, Seth M Bybee. Sci Rep 2017
55
43

Shedding new light on opsin evolution.
Megan L Porter, Joseph R Blasic, Michael J Bok, Evan G Cameron, Thomas Pringle, Thomas W Cronin, Phyllis R Robinson. Proc Biol Sci 2012
160
34

Laboratory and field response of the emerald ash borer (Coleoptera: Buprestidae), to selected regions of the electromagnetic spectrum.
Damon J Crook, Joseph A Francese, Kelley E Zylstra, Ivich Fraser, Alan J Sawyer, David W Bartels, David R Lance, Victor C Mastro. J Econ Entomol 2009
41
34

The Dynamic Evolutionary History of Pancrustacean Eyes and Opsins.
Miriam J Henze, Todd H Oakley. Integr Comp Biol 2015
57
34

Conservation, Duplication, and Divergence of Five Opsin Genes in Insect Evolution.
Roberto Feuda, Ferdinand Marlétaz, Michael A Bentley, Peter W H Holland. Genome Biol Evol 2016
40
34


Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Daniel I Speiser, M Sabrina Pankey, Alexander K Zaharoff, Barbara A Battelle, Heather D Bracken-Grissom, Jesse W Breinholt, Seth M Bybee, Thomas W Cronin, Anders Garm, Annie R Lindgren,[...]. BMC Bioinformatics 2014
44
30

The opsins.
Akihisa Terakita. Genome Biol 2005
330
30

Evolution of Insect Color Vision: From Spectral Sensitivity to Visual Ecology.
Casper J van der Kooi, Doekele G Stavenga, Kentaro Arikawa, Gregor Belušič, Almut Kelber. Annu Rev Entomol 2021
53
30

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
26

Positive selection of a duplicated UV-sensitive visual pigment coincides with wing pigment evolution in Heliconius butterflies.
Adriana D Briscoe, Seth M Bybee, Gary D Bernard, Furong Yuan, Marilou P Sison-Mangus, Robert D Reed, Andrew D Warren, Jorge Llorente-Bousquets, Chuan-Chin Chiao. Proc Natl Acad Sci U S A 2010
91
26

Gene duplication is an evolutionary mechanism for expanding spectral diversity in the long-wavelength photopigments of butterflies.
Francesca D Frentiu, Gary D Bernard, Marilou P Sison-Mangus, Andrew Van Zandt Brower, Adriana D Briscoe. Mol Biol Evol 2007
46
26


Optimization of trap color for emerald ash borer (Coleoptera: Buprestidae).
Joseph A Francese, Damon J Crook, Ivich Fraser, David R Lance, Alan J Sawyer, Victor C Mastro. J Econ Entomol 2010
40
26

Opsin transcripts of predatory diving beetles: a comparison of surface and subterranean photic niches.
Simon M Tierney, Steven J B Cooper, Kathleen M Saint, Terry Bertozzi, Josephine Hyde, William F Humphreys, Andrew D Austin. R Soc Open Sci 2015
22
22

Adaptive evolution of color vision as seen through the eyes of butterflies.
Francesca D Frentiu, Gary D Bernard, Cristina I Cuevas, Marilou P Sison-Mangus, Kathleen L Prudic, Adriana D Briscoe. Proc Natl Acad Sci U S A 2007
46
21

Evolution and mechanism of spectral tuning of blue-absorbing visual pigments in butterflies.
Motohiro Wakakuwa, Akihisa Terakita, Mitsumasa Koyanagi, Doekele G Stavenga, Yoshinori Shichida, Kentaro Arikawa. PLoS One 2010
23
21

Evidence of red sensitive photoreceptors in Pygopleurus israelitus (Glaphyridae: Coleoptera) and its implications for beetle pollination in the southeast Mediterranean.
J Martínez-Harms, M Vorobyev, J Schorn, A Shmida, T Keasar, U Homberg, F Schmeling, R Menzel. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2012
25
21


Molecular logic behind the three-way stochastic choices that expand butterfly colour vision.
Michael Perry, Michiyo Kinoshita, Giuseppe Saldi, Lucy Huo, Kentaro Arikawa, Claude Desplan. Nature 2016
58
21


Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
17

Ultrafast approximation for phylogenetic bootstrap.
Bui Quang Minh, Minh Anh Thi Nguyen, Arndt von Haeseler. Mol Biol Evol 2013
17

Evolution and expression plasticity of opsin genes in a fig pollinator, Ceratosolen solmsi.
Bo Wang, Jin-Hua Xiao, Sheng-Nan Bian, Li-Ming Niu, Robert W Murphy, Da-Wei Huang. PLoS One 2013
19
21

Opsin evolution and expression in arthropod compound eyes and ocelli: insights from the cricket Gryllus bimaculatus.
Miriam J Henze, Kara Dannenhauer, Martin Kohler, Thomas Labhart, Matthias Gesemann. BMC Evol Biol 2012
44
17

Mechanisms, functions and ecology of colour vision in the honeybee.
N Hempel de Ibarra, M Vorobyev, R Menzel. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2014
81
17



Molecular basis for ultraviolet vision in invertebrates.
Ernesto Salcedo, Lijun Zheng, Meridee Phistry, Eve E Bagg, Steven G Britt. J Neurosci 2003
66
17

Phylogenomics resolves the timing and pattern of insect evolution.
Bernhard Misof, Shanlin Liu, Karen Meusemann, Ralph S Peters, Alexander Donath, Christoph Mayer, Paul B Frandsen, Jessica Ware, Tomáš Flouri, Rolf G Beutel,[...]. Science 2014
17

Transcriptome analysis and RNA interference of cockroach phototransduction indicate three opsins and suggest a major role for TRPL channels.
Andrew S French, Shannon Meisner, Hongxia Liu, Matti Weckström, Päivi H Torkkeli. Front Physiol 2015
31
17

The eyes and vision of butterflies.
Kentaro Arikawa. J Physiol 2017
25
17


Spectral tuning mediated by helix III in butterfly long wavelength-sensitive visual opsins revealed by heterologous action spectroscopy.
Tomoka Saito, Mitsumasa Koyanagi, Tomohiro Sugihara, Takashi Nagata, Kentaro Arikawa, Akihisa Terakita. Zoological Lett 2019
8
50

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
Stéphane Guindon, Jean-François Dufayard, Vincent Lefort, Maria Anisimova, Wim Hordijk, Olivier Gascuel. Syst Biol 2010
17


Crystal structure of squid rhodopsin.
Midori Murakami, Tsutomu Kouyama. Nature 2008
369
13


The genome of the model beetle and pest Tribolium castaneum.
Stephen Richards, Richard A Gibbs, George M Weinstock, Susan J Brown, Robin Denell, Richard W Beeman, Richard Gibbs, Richard W Beeman, Susan J Brown, Gregor Bucher,[...]. Nature 2008
912
13

Molecular characterization of crustacean visual pigments and the evolution of pancrustacean opsins.
Megan L Porter, Thomas W Cronin, David A McClellan, Keith A Crandall. Mol Biol Evol 2007
55
13




Animal colour vision--behavioural tests and physiological concepts.
Almut Kelber, Misha Vorobyev, Daniel Osorio. Biol Rev Camb Philos Soc 2003
393
13

Color discrimination with broadband photoreceptors.
Christopher Schnaitmann, Christian Garbers, Thomas Wachtler, Hiromu Tanimoto. Curr Biol 2013
86
13

Receptor noise as a determinant of colour thresholds.
M Vorobyev, D Osorio. Proc Biol Sci 1998
551
13

The evolution of complexity in the visual systems of stomatopods: insights from transcriptomics.
Megan L Porter, Daniel I Speiser, Alexander K Zaharoff, Roy L Caldwell, Thomas W Cronin, Todd H Oakley. Integr Comp Biol 2013
29
13

Spectral heterogeneity of honeybee ommatidia.
Motohiro Wakakuwa, Masumi Kurasawa, Martin Giurfa, Kentaro Arikawa. Naturwissenschaften 2005
84
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.