A citation-based method for searching scientific literature

Richard Yau, Michael Rape. Nat Cell Biol 2016
Times Cited: 517







List of co-cited articles
1240 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The ubiquitin code.
David Komander, Michael Rape. Annu Rev Biochem 2012
42

Ubiquitin modifications.
Kirby N Swatek, David Komander. Cell Res 2016
810
30

The ubiquitin system.
A Hershko, A Ciechanover. Annu Rev Biochem 1998
17

Breaking the chains: structure and function of the deubiquitinases.
David Komander, Michael J Clague, Sylvie Urbé. Nat Rev Mol Cell Biol 2009
16

Ubiquitin Ligases: Structure, Function, and Regulation.
Ning Zheng, Nitzan Shabek. Annu Rev Biochem 2017
522
15

Mechanisms of Deubiquitinase Specificity and Regulation.
Tycho E T Mevissen, David Komander. Annu Rev Biochem 2017
430
14

Principles of Ubiquitin-Dependent Signaling.
Eugene Oh, David Akopian, Michael Rape. Annu Rev Cell Dev Biol 2018
127
13

Breaking the chains: deubiquitylating enzyme specificity begets function.
Michael J Clague, Sylvie Urbé, David Komander. Nat Rev Mol Cell Biol 2019
259
13

Assembly and Function of Heterotypic Ubiquitin Chains in Cell-Cycle and Protein Quality Control.
Richard G Yau, Kerstin Doerner, Erick R Castellanos, Diane L Haakonsen, Achim Werner, Nan Wang, X William Yang, Nadia Martinez-Martin, Marissa L Matsumoto, Vishva M Dixit,[...]. Cell 2017
148
13

Systematic and quantitative assessment of the ubiquitin-modified proteome.
Woong Kim, Eric J Bennett, Edward L Huttlin, Ailan Guo, Jing Li, Anthony Possemato, Mathew E Sowa, Ramin Rad, John Rush, Michael J Comb,[...]. Mol Cell 2011
13

Ubiquitin chain diversity at a glance.
Masato Akutsu, Ivan Dikic, Anja Bremm. J Cell Sci 2016
261
12

The Ubiquitin Code in the Ubiquitin-Proteasome System and Autophagy.
Yong Tae Kwon, Aaron Ciechanover. Trends Biochem Sci 2017
314
12

Building ubiquitin chains: E2 enzymes at work.
Yihong Ye, Michael Rape. Nat Rev Mol Cell Biol 2009
642
12

Structural insights into the catalysis and regulation of E3 ubiquitin ligases.
Lori Buetow, Danny T Huang. Nat Rev Mol Cell Biol 2016
259
11

RING domain E3 ubiquitin ligases.
Raymond J Deshaies, Claudio A P Joazeiro. Annu Rev Biochem 2009
11

Enhanced protein degradation by branched ubiquitin chains.
Hermann-Josef Meyer, Michael Rape. Cell 2014
282
11



Ubiquitination in disease pathogenesis and treatment.
Doris Popovic, Domagoj Vucic, Ivan Dikic. Nat Med 2014
523
10

A ubiquitin ligase complex assembles linear polyubiquitin chains.
Takayoshi Kirisako, Kiyoko Kamei, Shigeo Murata, Michiko Kato, Hiromi Fukumoto, Masato Kanie, Soichi Sano, Fuminori Tokunaga, Keiji Tanaka, Kazuhiro Iwai. EMBO J 2006
526
9

The K48-K63 Branched Ubiquitin Chain Regulates NF-κB Signaling.
Fumiaki Ohtake, Yasushi Saeki, Satoshi Ishido, Jun Kanno, Keiji Tanaka. Mol Cell 2016
158
9


Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling.
Martin A Michel, Kirby N Swatek, Manuela K Hospenthal, David Komander. Mol Cell 2017
97
9


K29-selective ubiquitin binding domain reveals structural basis of specificity and heterotypic nature of k29 polyubiquitin.
Yosua Adi Kristariyanto, Syed Arif Abdul Rehman, David G Campbell, Nicholas A Morrice, Clare Johnson, Rachel Toth, Yogesh Kulathu. Mol Cell 2015
99
8

A proteomics approach to understanding protein ubiquitination.
Junmin Peng, Daniel Schwartz, Joshua E Elias, Carson C Thoreen, Dongmei Cheng, Gerald Marsischky, Jeroen Roelofs, Daniel Finley, Steven P Gygi. Nat Biotechnol 2003
8

Activity-based E3 ligase profiling uncovers an E3 ligase with esterification activity.
Kuan-Chuan Pao, Nicola T Wood, Axel Knebel, Karim Rafie, Mathew Stanley, Peter D Mabbitt, Ramasubramanian Sundaramoorthy, Kay Hofmann, Daan M F van Aalten, Satpal Virdee. Nature 2018
100
8

The myeloma drug lenalidomide promotes the cereblon-dependent destruction of Ikaros proteins.
Gang Lu, Richard E Middleton, Huahang Sun, MarkVic Naniong, Christopher J Ott, Constantine S Mitsiades, Kwok-Kin Wong, James E Bradner, William G Kaelin. Science 2014
840
8

Insights into ubiquitin chain architecture using Ub-clipping.
Kirby N Swatek, Joanne L Usher, Anja F Kueck, Christina Gladkova, Tycho E T Mevissen, Jonathan N Pruneda, Tim Skern, David Komander. Nature 2019
87
9

UBCH7 reactivity profile reveals parkin and HHARI to be RING/HECT hybrids.
Dawn M Wenzel, Alexei Lissounov, Peter S Brzovic, Rachel E Klevit. Nature 2011
355
8

A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
Sebastian A Wagner, Petra Beli, Brian T Weinert, Michael L Nielsen, Jürgen Cox, Matthias Mann, Chunaram Choudhary. Mol Cell Proteomics 2011
646
8

OTU deubiquitinases reveal mechanisms of linkage specificity and enable ubiquitin chain restriction analysis.
Tycho E T Mevissen, Manuela K Hospenthal, Paul P Geurink, Paul R Elliott, Masato Akutsu, Nadia Arnaudo, Reggy Ekkebus, Yogesh Kulathu, Tobias Wauer, Farid El Oualid,[...]. Cell 2013
340
8

Activation of the canonical IKK complex by K63/M1-linked hybrid ubiquitin chains.
Christoph H Emmerich, Alban Ordureau, Sam Strickson, J Simon C Arthur, Patrick G A Pedrioli, David Komander, Philip Cohen. Proc Natl Acad Sci U S A 2013
291
8

Involvement of linear polyubiquitylation of NEMO in NF-kappaB activation.
Fuminori Tokunaga, Shin-ichi Sakata, Yasushi Saeki, Yoshinori Satomi, Takayoshi Kirisako, Kiyoko Kamei, Tomoko Nakagawa, Michiko Kato, Shigeo Murata, Shoji Yamaoka,[...]. Nat Cell Biol 2009
701
8

K63 ubiquitylation triggers proteasomal degradation by seeding branched ubiquitin chains.
Fumiaki Ohtake, Hikaru Tsuchiya, Yasushi Saeki, Keiji Tanaka. Proc Natl Acad Sci U S A 2018
118
8

Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation.
Ping Xu, Duc M Duong, Nicholas T Seyfried, Dongmei Cheng, Yang Xie, Jessica Robert, John Rush, Mark Hochstrasser, Daniel Finley, Junmin Peng. Cell 2009
790
7

Recognition of the polyubiquitin proteolytic signal.
J S Thrower, L Hoffman, M Rechsteiner, C M Pickart. EMBO J 2000
7

Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex.
Lingyan Jin, Adam Williamson, Sudeep Banerjee, Isabelle Philipp, Michael Rape. Cell 2008
372
7

Structure and Function of the 26S Proteasome.
Jared A M Bard, Ellen A Goodall, Eric R Greene, Erik Jonsson, Ken C Dong, Andreas Martin. Annu Rev Biochem 2018
279
7


A novel ubiquitination factor, E4, is involved in multiubiquitin chain assembly.
M Koegl, T Hoppe, S Schlenker, H D Ulrich, T U Mayer, S Jentsch. Cell 1999
769
7

Lenalidomide causes selective degradation of IKZF1 and IKZF3 in multiple myeloma cells.
Jan Krönke, Namrata D Udeshi, Anupama Narla, Peter Grauman, Slater N Hurst, Marie McConkey, Tanya Svinkina, Dirk Heckl, Eamon Comer, Xiaoyu Li,[...]. Science 2014
923
7

Protacs: chimeric molecules that target proteins to the Skp1-Cullin-F box complex for ubiquitination and degradation.
K M Sakamoto, K B Kim, A Kumagai, F Mercurio, C M Crews, R J Deshaies. Proc Natl Acad Sci U S A 2001
774
7

SHARPIN forms a linear ubiquitin ligase complex regulating NF-κB activity and apoptosis.
Fumiyo Ikeda, Yonathan Lissanu Deribe, Sigrid S Skånland, Benjamin Stieglitz, Caroline Grabbe, Mirita Franz-Wachtel, Sjoerd J L van Wijk, Panchali Goswami, Vanja Nagy, Janos Terzic,[...]. Nature 2011
517
7

Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation.
Simin Rahighi, Fumiyo Ikeda, Masato Kawasaki, Masato Akutsu, Nobuhiro Suzuki, Ryuichi Kato, Tobias Kensche, Tamami Uejima, Stuart Bloor, David Komander,[...]. Cell 2009
533
7

OTULIN antagonizes LUBAC signaling by specifically hydrolyzing Met1-linked polyubiquitin.
Kirstin Keusekotten, Paul Ronald Elliott, Laura Glockner, Berthe Katrine Fiil, Rune Busk Damgaard, Yogesh Kulathu, Tobias Wauer, Manuela Kathrin Hospenthal, Mads Gyrd-Hansen, Daniel Krappmann,[...]. Cell 2013
295
7

Mechanisms underlying ubiquitination.
C M Pickart. Annu Rev Biochem 2001
7

A multiubiquitin chain is confined to specific lysine in a targeted short-lived protein.
V Chau, J W Tobias, A Bachmair, D Marriott, D J Ecker, D K Gonda, A Varshavsky. Science 1989
7

Post-translational regulation of ubiquitin signaling.
Lei Song, Zhao-Qing Luo. J Cell Biol 2019
86
8

Ubiquitin Chain Enrichment Middle-Down Mass Spectrometry Enables Characterization of Branched Ubiquitin Chains in Cellulo.
Sean O Crowe, Ambar S J B Rana, Kirandeep K Deol, Ying Ge, Eric R Strieter. Anal Chem 2017
29
24


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.