A citation-based method for searching scientific literature

Denise J Cai, Daniel Aharoni, Tristan Shuman, Justin Shobe, Jeremy Biane, Weilin Song, Brandon Wei, Michael Veshkini, Mimi La-Vu, Jerry Lou, Sergio E Flores, Isaac Kim, Yoshitake Sano, Miou Zhou, Karsten Baumgaertel, Ayal Lavi, Masakazu Kamata, Mark Tuszynski, Mark Mayford, Peyman Golshani, Alcino J Silva. Nature 2016
Times Cited: 308







List of co-cited articles
1092 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
432
27

Optogenetic stimulation of a hippocampal engram activates fear memory recall.
Xu Liu, Steve Ramirez, Petti T Pang, Corey B Puryear, Arvind Govindarajan, Karl Deisseroth, Susumu Tonegawa. Nature 2012
688
26

Long-term dynamics of CA1 hippocampal place codes.
Yaniv Ziv, Laurie D Burns, Eric D Cocker, Elizabeth O Hamel, Kunal K Ghosh, Lacey J Kitch, Abbas El Gamal, Mark J Schnitzer. Nat Neurosci 2013
413
22

Competition between engrams influences fear memory formation and recall.
Asim J Rashid, Chen Yan, Valentina Mercaldo, Hwa-Lin Liz Hsiang, Sungmo Park, Christina J Cole, Antonietta De Cristofaro, Julia Yu, Charu Ramakrishnan, Soo Yeun Lee,[...]. Science 2016
128
21

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
19

Neurons are recruited to a memory trace based on relative neuronal excitability immediately before training.
Adelaide P Yiu, Valentina Mercaldo, Chen Yan, Blake Richards, Asim J Rashid, Hwa-Lin Liz Hsiang, Jessica Pressey, Vivek Mahadevan, Matthew M Tran, Steven A Kushner,[...]. Neuron 2014
187
18

Hippocampal memory traces are differentially modulated by experience, time, and adult neurogenesis.
Christine A Denny, Mazen A Kheirbek, Eva L Alba, Kenji F Tanaka, Rebecca A Brachman, Kimberly B Laughman, Nicole K Tomm, Gergely F Turi, Attila Losonczy, René Hen. Neuron 2014
233
18

Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data.
Pengcheng Zhou, Shanna L Resendez, Jose Rodriguez-Romaguera, Jessica C Jimenez, Shay Q Neufeld, Andrea Giovannucci, Johannes Friedrich, Eftychios A Pnevmatikakis, Garret D Stuber, Rene Hen,[...]. Elife 2018
127
18

Engram Cell Excitability State Determines the Efficacy of Memory Retrieval.
Michele Pignatelli, Tomás J Ryan, Dheeraj S Roy, Chanel Lovett, Lillian M Smith, Shruti Muralidhar, Susumu Tonegawa. Neuron 2019
56
30

Neuronal competition and selection during memory formation.
Jin-Hee Han, Steven A Kushner, Adelaide P Yiu, Christy J Cole, Anna Matynia, Robert A Brown, Rachael L Neve, John F Guzowski, Alcino J Silva, Sheena A Josselyn. Science 2007
374
16

Finding the engram.
Sheena A Josselyn, Stefan Köhler, Paul W Frankland. Nat Rev Neurosci 2015
205
16


Selective erasure of a fear memory.
Jin-Hee Han, Steven A Kushner, Adelaide P Yiu, Hwa-Lin Liz Hsiang, Thorsten Buch, Ari Waisman, Bruno Bontempi, Rachael L Neve, Paul W Frankland, Sheena A Josselyn. Science 2009
316
15

Localization of a stable neural correlate of associative memory.
Leon G Reijmers, Brian L Perkins, Naoki Matsuo, Mark Mayford. Science 2007
404
15

Neuronal Allocation to a Hippocampal Engram.
Sungmo Park, Emily E Kramer, Valentina Mercaldo, Asim J Rashid, Nathan Insel, Paul W Frankland, Sheena A Josselyn. Neuropsychopharmacology 2016
65
23

CREB regulates excitability and the allocation of memory to subsets of neurons in the amygdala.
Yu Zhou, Jaejoon Won, Mikael Guzman Karlsson, Miou Zhou, Thomas Rogerson, Jayaprakash Balaji, Rachael Neve, Panayiota Poirazi, Alcino J Silva. Nat Neurosci 2009
293
15

Interregional synaptic maps among engram cells underlie memory formation.
Jun-Hyeok Choi, Su-Eon Sim, Ji-Il Kim, Dong Il Choi, Jihae Oh, Sanghyun Ye, Jaehyun Lee, TaeHyun Kim, Hyoung-Gon Ko, Chae-Seok Lim,[...]. Science 2018
96
15

Creating a false memory in the hippocampus.
Steve Ramirez, Xu Liu, Pei-Ann Lin, Junghyup Suh, Michele Pignatelli, Roger L Redondo, Tomás J Ryan, Susumu Tonegawa. Science 2013
375
14

Engrams and circuits crucial for systems consolidation of a memory.
Takashi Kitamura, Sachie K Ogawa, Dheeraj S Roy, Teruhiro Okuyama, Mark D Morrissey, Lillian M Smith, Roger L Redondo, Susumu Tonegawa. Science 2017
288
14

Memory. Engram cells retain memory under retrograde amnesia.
Tomás J Ryan, Dheeraj S Roy, Michele Pignatelli, Autumn Arons, Susumu Tonegawa. Science 2015
254
14

Memory engrams: Recalling the past and imagining the future.
Sheena A Josselyn, Susumu Tonegawa. Science 2020
99
14

Memory Engram Cells Have Come of Age.
Susumu Tonegawa, Xu Liu, Steve Ramirez, Roger Redondo. Neuron 2015
210
13

The hippocampal engram maps experience but not place.
Kazumasa Z Tanaka, Hongshen He, Anupratap Tomar, Kazue Niisato, Arthur J Y Huang, Thomas J McHugh. Science 2018
60
21

Permanent genetic access to transiently active neurons via TRAP: targeted recombination in active populations.
Casey J Guenthner, Kazunari Miyamichi, Helen H Yang, H Craig Heller, Liqun Luo. Neuron 2013
226
12

Synapse-specific representation of the identity of overlapping memory engrams.
Kareem Abdou, Mohammad Shehata, Kiriko Choko, Hirofumi Nishizono, Mina Matsuo, Shin-Ichi Muramatsu, Kaoru Inokuchi. Science 2018
49
24

Hippocampal ensemble dynamics timestamp events in long-term memory.
Alon Rubin, Nitzan Geva, Liron Sheintuch, Yaniv Ziv. Elife 2015
91
13

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
298
12

Overlapping memory trace indispensable for linking, but not recalling, individual memories.
Jun Yokose, Reiko Okubo-Suzuki, Masanori Nomoto, Noriaki Ohkawa, Hirofumi Nishizono, Akinobu Suzuki, Mina Matsuo, Shuhei Tsujimura, Yukari Takahashi, Masashi Nagase,[...]. Science 2017
44
22

Cortical representations are reinstated by the hippocampus during memory retrieval.
Kazumasa Z Tanaka, Aleksandr Pevzner, Anahita B Hamidi, Yuki Nakazawa, Jalina Graham, Brian J Wiltgen. Neuron 2014
180
10

Direct reactivation of a coherent neocortical memory of context.
Kiriana K Cowansage, Tristan Shuman, Blythe C Dillingham, Allene Chang, Peyman Golshani, Mark Mayford. Neuron 2014
166
10

High-speed, miniaturized fluorescence microscopy in freely moving mice.
Benjamin A Flusberg, Axel Nimmerjahn, Eric D Cocker, Eran A Mukamel, Robert P J Barretto, Tony H Ko, Laurie D Burns, Juergen C Jung, Mark J Schnitzer. Nat Methods 2008
212
10

NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.
Eftychios A Pnevmatikakis, Andrea Giovannucci. J Neurosci Methods 2017
141
10

Reactivation of neural ensembles during the retrieval of recent and remote memory.
Kaycie K Tayler, Kazumasa Z Tanaka, Leon G Reijmers, Brian J Wiltgen. Curr Biol 2013
136
9

Fully integrated silicon probes for high-density recording of neural activity.
James J Jun, Nicholas A Steinmetz, Joshua H Siegle, Daniel J Denman, Marius Bauza, Brian Barbarits, Albert K Lee, Costas A Anastassiou, Alexandru Andrei, Çağatay Aydın,[...]. Nature 2017
451
9

Internally generated cell assembly sequences in the rat hippocampus.
Eva Pastalkova, Vladimir Itskov, Asohan Amarasingham, György Buzsáki. Science 2008
594
9

Orchestrated ensemble activities constitute a hippocampal memory engram.
Khaled Ghandour, Noriaki Ohkawa, Chi Chung Alan Fung, Hirotaka Asai, Yoshito Saitoh, Takashi Takekawa, Reiko Okubo-Suzuki, Shingo Soya, Hirofumi Nishizono, Mina Matsuo,[...]. Nat Commun 2019
30
30

The role of engram cells in the systems consolidation of memory.
Susumu Tonegawa, Mark D Morrissey, Takashi Kitamura. Nat Rev Neurosci 2018
99
9

Bidirectional switch of the valence associated with a hippocampal contextual memory engram.
Roger L Redondo, Joshua Kim, Autumn L Arons, Steve Ramirez, Xu Liu, Susumu Tonegawa. Nature 2014
215
9

Functional imaging of hippocampal place cells at cellular resolution during virtual navigation.
Daniel A Dombeck, Christopher D Harvey, Lin Tian, Loren L Looger, David W Tank. Nat Neurosci 2010
391
9


Behavioral time scale synaptic plasticity underlies CA1 place fields.
Katie C Bittner, Aaron D Milstein, Christine Grienberger, Sandro Romani, Jeffrey C Magee. Science 2017
142
9

Fast high-resolution miniature two-photon microscopy for brain imaging in freely behaving mice.
Weijian Zong, Runlong Wu, Mingli Li, Yanhui Hu, Yijun Li, Jinghang Li, Hao Rong, Haitao Wu, Yangyang Xu, Yang Lu,[...]. Nat Methods 2017
132
9

Fast online deconvolution of calcium imaging data.
Johannes Friedrich, Pengcheng Zhou, Liam Paninski. PLoS Comput Biol 2017
89
10

DeepLabCut: markerless pose estimation of user-defined body parts with deep learning.
Alexander Mathis, Pranav Mamidanna, Kevin M Cury, Taiga Abe, Venkatesh N Murthy, Mackenzie Weygandt Mathis, Matthias Bethge. Nat Neurosci 2018
412
9

Visualization of cortical, subcortical and deep brain neural circuit dynamics during naturalistic mammalian behavior with head-mounted microscopes and chronically implanted lenses.
Shanna L Resendez, Josh H Jennings, Randall L Ung, Vijay Mohan K Namboodiri, Zhe Charles Zhou, James M Otis, Hiroshi Nomura, Jenna A McHenry, Oksana Kosyk, Garret D Stuber. Nat Protoc 2016
112
9

Functionally Distinct Neuronal Ensembles within the Memory Engram.
Xiaochen Sun, Max J Bernstein, Meizhen Meng, Siyuan Rao, Andreas T Sørensen, Li Yao, Xiaohui Zhang, Polina O Anikeeva, Yingxi Lin. Cell 2020
30
30

Environment-specific expression of the immediate-early gene Arc in hippocampal neuronal ensembles.
J F Guzowski, B L McNaughton, C A Barnes, P F Worley. Nat Neurosci 1999
690
8

Labelling and optical erasure of synaptic memory traces in the motor cortex.
Akiko Hayashi-Takagi, Sho Yagishita, Mayumi Nakamura, Fukutoshi Shirai, Yi I Wu, Amanda L Loshbaugh, Brian Kuhlman, Klaus M Hahn, Haruo Kasai. Nature 2015
291
8

The hippocampus plays a selective role in the retrieval of detailed contextual memories.
Brian J Wiltgen, Miou Zhou, Ying Cai, J Balaji, Mikael Guzman Karlsson, Sherveen N Parivash, Weidong Li, Alcino J Silva. Curr Biol 2010
162
8

Ventral CA1 neurons store social memory.
Teruhiro Okuyama, Takashi Kitamura, Dheeraj S Roy, Shigeyoshi Itohara, Susumu Tonegawa. Science 2016
212
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.