A citation-based method for searching scientific literature

Alexander Hirschi, William J Martin, Zigmund Luka, Lioudmila V Loukachevitch, Nicholas J Reiter. RNA 2016
Times Cited: 22







List of co-cited articles
310 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


TERRA-reinforced association of LSD1 with MRE11 promotes processing of uncapped telomeres.
Antonio Porro, Sascha Feuerhahn, Joachim Lingner. Cell Rep 2014
78
36

Histone demethylation mediated by the nuclear amine oxidase homolog LSD1.
Yujiang Shi, Fei Lan, Caitlin Matson, Peter Mulligan, Johnathan R Whetstine, Philip A Cole, Robert A Casero, Yang Shi. Cell 2004
31

Regulation of LSD1 histone demethylase activity by its associated factors.
Yu-Jiang Shi, Caitlin Matson, Fei Lan, Shigeki Iwase, Tadashi Baba, Yang Shi. Mol Cell 2005
597
27

Functional characterization of the TERRA transcriptome at damaged telomeres.
Antonio Porro, Sascha Feuerhahn, Julien Delafontaine, Harold Riethman, Jacques Rougemont, Joachim Lingner. Nat Commun 2014
139
27

Oxidative DNA damage is epigenetic by regulating gene transcription via base excision repair.
Aaron M Fleming, Yun Ding, Cynthia J Burrows. Proc Natl Acad Sci U S A 2017
164
27

Regulation of telomere length by G-quadruplex telomere DNA- and TERRA-binding protein TLS/FUS.
Kentaro Takahama, Asami Takada, Shota Tada, Mai Shimizu, Kazutoshi Sayama, Riki Kurokawa, Takanori Oyoshi. Chem Biol 2013
94
27

An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation.
Min Gyu Lee, Christopher Wynder, Neil Cooch, Ramin Shiekhattar. Nature 2005
546
22


p53 is regulated by the lysine demethylase LSD1.
Jing Huang, Roopsha Sengupta, Alexsandra B Espejo, Min Gyu Lee, Jean A Dorsey, Mario Richter, Susanne Opravil, Ramin Shiekhattar, Mark T Bedford, Thomas Jenuwein,[...]. Nature 2007
549
22

Targeting of Polycomb Repressive Complex 2 to RNA by Short Repeats of Consecutive Guanines.
Xueyin Wang, Karen J Goodrich, Anne R Gooding, Haroon Naeem, Stuart Archer, Richard D Paucek, Daniel T Youmans, Thomas R Cech, Chen Davidovich. Mol Cell 2017
99
22

Alternative splicing of the histone demethylase LSD1/KDM1 contributes to the modulation of neurite morphogenesis in the mammalian nervous system.
Cristina Zibetti, Antonio Adamo, Claudia Binda, Federico Forneris, Emanuela Toffolo, Chiara Verpelli, Enrico Ginelli, Andrea Mattevi, Carlo Sala, Elena Battaglioli. J Neurosci 2010
106
18

Structural basis for the inhibition of the LSD1 histone demethylase by the antidepressant trans-2-phenylcyclopropylamine.
Maojun Yang, Jeffrey C Culhane, Lawrence M Szewczuk, Pegah Jalili, Haydn L Ball, Mischa Machius, Philip A Cole, Hongtao Yu. Biochemistry 2007
153
18

The SNAG domain of Snail1 functions as a molecular hook for recruiting lysine-specific demethylase 1.
Yiwei Lin, Yadi Wu, Junlin Li, Chenfang Dong, Xiaofeng Ye, Young-In Chi, B Mark Evers, Binhua P Zhou. EMBO J 2010
244
18

Molecular mimicry and ligand recognition in binding and catalysis by the histone demethylase LSD1-CoREST complex.
Riccardo Baron, Claudia Binda, Marcello Tortorici, J Andrew McCammon, Andrea Mattevi. Structure 2011
64
18

A specific LSD1/KDM1A isoform regulates neuronal differentiation through H3K9 demethylation.
Benoit Laurent, Lv Ruitu, Jernej Murn, Kristina Hempel, Ryan Ferrao, Yang Xiang, Shichong Liu, Benjamin A Garcia, Hao Wu, Feizhen Wu,[...]. Mol Cell 2015
153
18

Long noncoding RNA as modular scaffold of histone modification complexes.
Miao-Chih Tsai, Ohad Manor, Yue Wan, Nima Mosammaparast, Jordon K Wang, Fei Lan, Yang Shi, Eran Segal, Howard Y Chang. Science 2010
18

Structural basis of LSD1-CoREST selectivity in histone H3 recognition.
Federico Forneris, Claudia Binda, Antonio Adamo, Elena Battaglioli, Andrea Mattevi. J Biol Chem 2007
162
18

Structural basis of histone demethylation by LSD1 revealed by suicide inactivation.
Maojun Yang, Jeffrey C Culhane, Lawrence M Szewczuk, Christian B Gocke, Chad A Brautigam, Diana R Tomchick, Mischa Machius, Philip A Cole, Hongtao Yu. Nat Struct Mol Biol 2007
124
18


Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends.
Claus M Azzalin, Patrick Reichenbach, Lela Khoriauli, Elena Giulotto, Joachim Lingner. Science 2007
829
18

The non-coding RNA TERRA is a natural ligand and direct inhibitor of human telomerase.
Sophie Redon, Patrick Reichenbach, Joachim Lingner. Nucleic Acids Res 2010
228
18

LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription.
Eric Metzger, Melanie Wissmann, Na Yin, Judith M Müller, Robert Schneider, Antoine H F M Peters, Thomas Günther, Reinhard Buettner, Roland Schüle. Nature 2005
18

Transcription regulation of CDKN1A (p21/CIP1/WAF1) by TRF2 is epigenetically controlled through the REST repressor complex.
Tabish Hussain, Dhurjhoti Saha, Gunjan Purohit, Anirban Kar, Anand Kishore Mukherjee, Shalu Sharma, Suman Sengupta, Parashar Dhapola, Basudeb Maji, Sreekanth Vedagopuram,[...]. Sci Rep 2017
30
18

Non-duplex G-Quadruplex Structures Emerge as Mediators of Epigenetic Modifications.
Ananda Kishore Mukherjee, Shalu Sharma, Shantanu Chowdhury. Trends Genet 2019
37
18

FANCJ coordinates two pathways that maintain epigenetic stability at G-quadruplex DNA.
Peter Sarkies, Pierre Murat, Lara G Phillips, K J Patel, Shankar Balasubramanian, Julian E Sale. Nucleic Acids Res 2012
143
18

Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide.
Rashi Halder, Kangkan Halder, Priyanka Sharma, Gaurav Garg, Shantanu Sengupta, Shantanu Chowdhury. Mol Biosyst 2010
49
18

DNA G-quadruplexes show strong interaction with DNA methyltransferases in vitro.
Simone L Cree, Rayleen Fredericks, Allison Miller, F Grant Pearce, Vyacheslav Filichev, Conan Fee, Martin A Kennedy. FEBS Lett 2016
18
22

Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species.
Anjali Verma, Kangkan Halder, Rashi Halder, Vinod Kumar Yadav, Pooja Rawal, Ram Krishna Thakur, Farhan Mohd, Abhay Sharma, Shantanu Chowdhury. J Med Chem 2008
141
18

RNA G-Quadruplexes in Biology: Principles and Molecular Mechanisms.
Marta M Fay, Shawn M Lyons, Pavel Ivanov. J Mol Biol 2017
174
18

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
18

Epigenetic suppression of human telomerase (hTERT) is mediated by the metastasis suppressor NME2 in a G-quadruplex-dependent fashion.
Dhurjhoti Saha, Ankita Singh, Tabish Hussain, Vivek Srivastava, Suman Sengupta, Anirban Kar, Parashar Dhapola, Vishnu Dhople, Ramesh Ummanni, Shantanu Chowdhury. J Biol Chem 2017
30
18

Shelterin-Mediated Telomere Protection.
Titia de Lange. Annu Rev Genet 2018
235
18

TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres.
Zhong Deng, Julie Norseen, Andreas Wiedmer, Harold Riethman, Paul M Lieberman. Mol Cell 2009
355
18

Whole genome experimental maps of DNA G-quadruplexes in multiple species.
Giovanni Marsico, Vicki S Chambers, Aleksandr B Sahakyan, Patrick McCauley, Jonathan M Boutell, Marco Di Antonio, Shankar Balasubramanian. Nucleic Acids Res 2019
107
18

Protein recognition by short peptide reversible inhibitors of the chromatin-modifying LSD1/CoREST lysine demethylase.
Marcello Tortorici, Maria Teresa Borrello, Maria Tardugno, Laurent R Chiarelli, Simona Pilotto, Giuseppe Ciossani, Nadeem A Vellore, Sarah G Bailey, Jonathan Cowan, Maria O'Connell,[...]. ACS Chem Biol 2013
39
13

Interplay among nucleosomal DNA, histone tails, and corepressor CoREST underlies LSD1-mediated H3 demethylation.
Simona Pilotto, Valentina Speranzini, Marcello Tortorici, Dominique Durand, Alexander Fish, Sergio Valente, Federico Forneris, Antonello Mai, Titia K Sixma, Patrice Vachette,[...]. Proc Natl Acad Sci U S A 2015
48
13

Crystal structure of the histone lysine specific demethylase LSD1 complexed with tetrahydrofolate.
Zigmund Luka, Svetlana Pakhomova, Lioudmila V Loukachevitch, M Wade Calcutt, Marcia E Newcomer, Conrad Wagner. Protein Sci 2014
31
13

Lysine-specific demethylase 1-selective inactivators: protein-targeted drug delivery mechanism.
Daisuke Ogasawara, Yukihiro Itoh, Hiroki Tsumoto, Taeko Kakizawa, Koshiki Mino, Kiyoshi Fukuhara, Hidehiko Nakagawa, Makoto Hasegawa, Ryuzo Sasaki, Tamio Mizukami,[...]. Angew Chem Int Ed Engl 2013
44
13

Human histone demethylase LSD1 reads the histone code.
Federico Forneris, Claudia Binda, Maria Antonietta Vanoni, Elena Battaglioli, Andrea Mattevi. J Biol Chem 2005
185
13

Identification of SNAIL1 Peptide-Based Irreversible Lysine-Specific Demethylase 1-Selective Inactivators.
Yukihiro Itoh, Keisuke Aihara, Paolo Mellini, Toshifumi Tojo, Yosuke Ota, Hiroki Tsumoto, Viswas Raja Solomon, Peng Zhan, Miki Suzuki, Daisuke Ogasawara,[...]. J Med Chem 2016
18
16

GFI1 proteins orchestrate the emergence of haematopoietic stem cells through recruitment of LSD1.
Roshana Thambyrajah, Milena Mazan, Rahima Patel, Victoria Moignard, Monika Stefanska, Elli Marinopoulou, Yaoyong Li, Christophe Lancrin, Thomas Clapes, Tarik Möröy,[...]. Nat Cell Biol 2016
111
13

Pan-histone demethylase inhibitors simultaneously targeting Jumonji C and lysine-specific demethylases display high anticancer activities.
Dante Rotili, Stefano Tomassi, Mariarosaria Conte, Rosaria Benedetti, Marcello Tortorici, Giuseppe Ciossani, Sergio Valente, Biagina Marrocco, Donatella Labella, Ettore Novellino,[...]. J Med Chem 2014
79
13

A novel mammalian flavin-dependent histone demethylase.
Aristotele Karytinos, Federico Forneris, Antonella Profumo, Giuseppe Ciossani, Elena Battaglioli, Claudia Binda, Andrea Mattevi. J Biol Chem 2009
178
13

Enhancer decommissioning by LSD1 during embryonic stem cell differentiation.
Warren A Whyte, Steve Bilodeau, David A Orlando, Heather A Hoke, Garrett M Frampton, Charles T Foster, Shaun M Cowley, Richard A Young. Nature 2012
387
13

A DNA Hypomethylation Signature Predicts Antitumor Activity of LSD1 Inhibitors in SCLC.
Helai P Mohammad, Kimberly N Smitheman, Chandrashekhar D Kamat, David Soong, Kelly E Federowicz, Glenn S Van Aller, Jess L Schneck, Jeffrey D Carson, Yan Liu, Michael Butticello,[...]. Cancer Cell 2015
273
13

Inhibition of the LSD1 (KDM1A) demethylase reactivates the all-trans-retinoic acid differentiation pathway in acute myeloid leukemia.
Tino Schenk, Weihsu Claire Chen, Stefanie Göllner, Louise Howell, Liqing Jin, Katja Hebestreit, Hans-Ulrich Klein, Andreea C Popescu, Alan Burnett, Ken Mills,[...]. Nat Med 2012
448
13

LSD1n is an H4K20 demethylase regulating memory formation via transcriptional elongation control.
Jianxun Wang, Francesca Telese, Yuliang Tan, Wenbo Li, Chunyu Jin, Xin He, Harihar Basnet, Qi Ma, Daria Merkurjev, Xiaoyan Zhu,[...]. Nat Neurosci 2015
83
13

Biochemical, structural, and biological evaluation of tranylcypromine derivatives as inhibitors of histone demethylases LSD1 and LSD2.
Claudia Binda, Sergio Valente, Mauro Romanenghi, Simona Pilotto, Roberto Cirilli, Aristotele Karytinos, Giuseppe Ciossani, Oronza A Botrugno, Federico Forneris, Maria Tardugno,[...]. J Am Chem Soc 2010
185
13

Pharmacological Inhibition of the Histone Lysine Demethylase KDM1A Suppresses the Growth of Multiple Acute Myeloid Leukemia Subtypes.
John P McGrath, Kaylyn E Williamson, Srividya Balasubramanian, Shobu Odate, Shilpi Arora, Charlie Hatton, Thomas M Edwards, Thomas O'Brien, Steven Magnuson, David Stokoe,[...]. Cancer Res 2016
66
13

Histone demethylation catalysed by LSD1 is a flavin-dependent oxidative process.
Federico Forneris, Claudia Binda, Maria Antonietta Vanoni, Andrea Mattevi, Elena Battaglioli. FEBS Lett 2005
195
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.