A citation-based method for searching scientific literature

Barbara Treutlein, Qian Yi Lee, J Gray Camp, Moritz Mall, Winston Koh, Seyed Ali Mohammad Shariati, Sopheak Sim, Norma F Neff, Jan M Skotheim, Marius Wernig, Stephen R Quake. Nature 2016
Times Cited: 239







List of co-cited articles
921 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Direct conversion of fibroblasts to functional neurons by defined factors.
Thomas Vierbuchen, Austin Ostermeier, Zhiping P Pang, Yuko Kokubu, Thomas C Südhof, Marius Wernig. Nature 2010
32

Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons.
Orly L Wapinski, Thomas Vierbuchen, Kun Qu, Qian Yi Lee, Soham Chanda, Daniel R Fuentes, Paul G Giresi, Yi Han Ng, Samuele Marro, Norma F Neff,[...]. Cell 2013
362
28


Generation of induced neuronal cells by the single reprogramming factor ASCL1.
Soham Chanda, Cheen Euong Ang, Jonathan Davila, ChangHui Pak, Moritz Mall, Qian Yi Lee, Henrik Ahlenius, Seung Woo Jung, Thomas C Südhof, Marius Wernig. Stem Cell Reports 2014
217
19


Induction of human neuronal cells by defined transcription factors.
Zhiping P Pang, Nan Yang, Thomas Vierbuchen, Austin Ostermeier, Daniel R Fuentes, Troy Q Yang, Ami Citri, Vittorio Sebastiano, Samuele Marro, Thomas C Südhof,[...]. Nature 2011
839
17


Myt1l safeguards neuronal identity by actively repressing many non-neuronal fates.
Moritz Mall, Michael S Kareta, Soham Chanda, Henrik Ahlenius, Nicholas Perotti, Bo Zhou, Sarah D Grieder, Xuecai Ge, Sienna Drake, Cheen Euong Ang,[...]. Nature 2017
110
16

Rapid Chromatin Switch in the Direct Reprogramming of Fibroblasts to Neurons.
Orly L Wapinski, Qian Yi Lee, Albert C Chen, Rui Li, M Ryan Corces, Cheen Euong Ang, Barbara Treutlein, Chaomei Xiang, Valérie Baubet, Fabian Patrik Suchy,[...]. Cell Rep 2017
69
23

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
15

Identification and Successful Negotiation of a Metabolic Checkpoint in Direct Neuronal Reprogramming.
Sergio Gascón, Elisa Murenu, Giacomo Masserdotti, Felipe Ortega, Gianluca L Russo, David Petrik, Aditi Deshpande, Christophe Heinrich, Marisa Karow, Stephen P Robertson,[...]. Cell Stem Cell 2016
194
15

Direct reprogramming of fibroblasts into functional cardiomyocytes by defined factors.
Masaki Ieda, Ji-Dong Fu, Paul Delgado-Olguin, Vasanth Vedantham, Yohei Hayashi, Benoit G Bruneau, Deepak Srivastava. Cell 2010
15

Small-Molecule-Driven Direct Reprogramming of Mouse Fibroblasts into Functional Neurons.
Xiang Li, Xiaohan Zuo, Junzhan Jing, Yantao Ma, Jiaming Wang, Defang Liu, Jialiang Zhu, Xiaomin Du, Liang Xiong, Yuanyuan Du,[...]. Cell Stem Cell 2015
245
15

Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons.
Chongyuan Luo, Qian Yi Lee, Orly Wapinski, Rosa Castanon, Joseph R Nery, Moritz Mall, Michael S Kareta, Sean M Cullen, Margaret A Goodell, Howard Y Chang,[...]. Elife 2019
40
35

Transcriptional Mechanisms of Proneural Factors and REST in Regulating Neuronal Reprogramming of Astrocytes.
Giacomo Masserdotti, Sébastien Gillotin, Bernd Sutor, Daniela Drechsel, Martin Irmler, Helle F Jørgensen, Steffen Sass, Fabian J Theis, Johannes Beckers, Benedikt Berninger,[...]. Cell Stem Cell 2015
111
13

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
13

Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda, Shinya Yamanaka. Cell 2007
13

Direct pericyte-to-neuron reprogramming via unfolding of a neural stem cell-like program.
Marisa Karow, J Gray Camp, Sven Falk, Tobias Gerber, Abhijeet Pataskar, Malgorzata Gac-Santel, Jorge Kageyama, Agnieska Brazovskaja, Angela Garding, Wenqiang Fan,[...]. Nat Neurosci 2018
51
25

Direct Conversion of Normal and Alzheimer's Disease Human Fibroblasts into Neuronal Cells by Small Molecules.
Wenxiang Hu, Binlong Qiu, Wuqiang Guan, Qinying Wang, Min Wang, Wei Li, Longfei Gao, Lu Shen, Yin Huang, Gangcai Xie,[...]. Cell Stem Cell 2015
289
13

MicroRNAs Induce a Permissive Chromatin Environment that Enables Neuronal Subtype-Specific Reprogramming of Adult Human Fibroblasts.
Daniel G Abernathy, Woo Kyung Kim, Matthew J McCoy, Allison M Lake, Rebecca Ouwenga, Seong Won Lee, Xiaoyun Xing, Daofeng Li, Hyung Joo Lee, Robert O Heuckeroth,[...]. Cell Stem Cell 2017
71
16

Direct conversion of fibroblasts to neurons by reprogramming PTB-regulated microRNA circuits.
Yuanchao Xue, Kunfu Ouyang, Jie Huang, Yu Zhou, Hong Ouyang, Hairi Li, Gang Wang, Qijia Wu, Chaoliang Wei, Yanzhen Bi,[...]. Cell 2013
353
12

Single-cell mapping of lineage and identity in direct reprogramming.
Brent A Biddy, Wenjun Kong, Kenji Kamimoto, Chuner Guo, Sarah E Waye, Tao Sun, Samantha A Morris. Nature 2018
115
12

Generation of induced neurons via direct conversion in vivo.
Olof Torper, Ulrich Pfisterer, Daniel A Wolf, Maria Pereira, Shong Lau, Johan Jakobsson, Anders Björklund, Shane Grealish, Malin Parmar. Proc Natl Acad Sci U S A 2013
273
11

MicroRNA-mediated conversion of human fibroblasts to neurons.
Andrew S Yoo, Alfred X Sun, Li Li, Aleksandr Shcheglovitov, Thomas Portmann, Yulong Li, Chris Lee-Messer, Ricardo E Dolmetsch, Richard W Tsien, Gerald R Crabtree. Nature 2011
672
11

Maintenance of age in human neurons generated by microRNA-based neuronal conversion of fibroblasts.
Christine J Huh, Bo Zhang, Matheus B Victor, Sonika Dahiya, Luis Fz Batista, Steve Horvath, Andrew S Yoo. Elife 2016
99
11

Direct lineage conversion of terminally differentiated hepatocytes to functional neurons.
Samuele Marro, Zhiping P Pang, Nan Yang, Miao-Chih Tsai, Kun Qu, Howard Y Chang, Thomas C Südhof, Marius Wernig. Cell Stem Cell 2011
245
11

Direct conversion of human fibroblasts to dopaminergic neurons.
Ulrich Pfisterer, Agnete Kirkeby, Olof Torper, James Wood, Jenny Nelander, Audrey Dufour, Anders Björklund, Olle Lindvall, Johan Jakobsson, Malin Parmar. Proc Natl Acad Sci U S A 2011
536
11

Direct generation of functional dopaminergic neurons from mouse and human fibroblasts.
Massimiliano Caiazzo, Maria Teresa Dell'Anno, Elena Dvoretskova, Dejan Lazarevic, Stefano Taverna, Damiana Leo, Tatyana D Sotnikova, Andrea Menegon, Paola Roncaglia, Giorgia Colciago,[...]. Nature 2011
697
11

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
938
11

Heart repair by reprogramming non-myocytes with cardiac transcription factors.
Kunhua Song, Young-Jae Nam, Xiang Luo, Xiaoxia Qi, Wei Tan, Guo N Huang, Asha Acharya, Christopher L Smith, Michelle D Tallquist, Eric G Neilson,[...]. Nature 2012
790
10

In vivo reprogramming of murine cardiac fibroblasts into induced cardiomyocytes.
Li Qian, Yu Huang, C Ian Spencer, Amy Foley, Vasanth Vedantham, Lei Liu, Simon J Conway, Ji-dong Fu, Deepak Srivastava. Nature 2012
907
10

Small molecules enable neurogenin 2 to efficiently convert human fibroblasts into cholinergic neurons.
Meng-Lu Liu, Tong Zang, Yuhua Zou, Joshua C Chang, Jay R Gibson, Kimberly M Huber, Chun-Li Zhang. Nat Commun 2013
230
10

Reversed graph embedding resolves complex single-cell trajectories.
Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A Pliner, Cole Trapnell. Nat Methods 2017
10

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
10

Directly Reprogrammed Human Neurons Retain Aging-Associated Transcriptomic Signatures and Reveal Age-Related Nucleocytoplasmic Defects.
Jerome Mertens, Apuã C M Paquola, Manching Ku, Emily Hatch, Lena Böhnke, Shauheen Ladjevardi, Sean McGrath, Benjamin Campbell, Hyungjun Lee, Joseph R Herdy,[...]. Cell Stem Cell 2015
366
10

Diverse reprogramming codes for neuronal identity.
Rachel Tsunemoto, Sohyon Lee, Attila Szűcs, Pavel Chubukov, Irina Sokolova, Joel W Blanchard, Kevin T Eade, Jacob Bruggemann, Chunlei Wu, Ali Torkamani,[...]. Nature 2018
70
14

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
10

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
10

Functional properties of neurons derived from in vitro reprogrammed postnatal astroglia.
Benedikt Berninger, Marcos R Costa, Ursula Koch, Timm Schroeder, Bernd Sutor, Benedikt Grothe, Magdalena Götz. J Neurosci 2007
266
9

Directing astroglia from the cerebral cortex into subtype specific functional neurons.
Christophe Heinrich, Robert Blum, Sergio Gascón, Giacomo Masserdotti, Pratibha Tripathi, Rodrigo Sánchez, Steffen Tiedt, Timm Schroeder, Magdalena Götz, Benedikt Berninger. PLoS Biol 2010
313
9

Ascl1 Converts Dorsal Midbrain Astrocytes into Functional Neurons In Vivo.
Yueguang Liu, Qinglong Miao, Jiacheng Yuan, Su'e Han, Panpan Zhang, Sanlan Li, Zhiping Rao, Wenlong Zhao, Qian Ye, Junlan Geng,[...]. J Neurosci 2015
136
9

CRISPR Activation Screens Systematically Identify Factors that Drive Neuronal Fate and Reprogramming.
Yanxia Liu, Chen Yu, Timothy Patrick Daley, Fangyuan Wang, William S Cao, Salil Bhate, Xueqiu Lin, Chris Still, Honglei Liu, Dehua Zhao,[...]. Cell Stem Cell 2018
95
9

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
9

Direct lineage reprogramming: strategies, mechanisms, and applications.
Jun Xu, Yuanyuan Du, Hongkui Deng. Cell Stem Cell 2015
247
9

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
9

Reversing a model of Parkinson's disease with in situ converted nigral neurons.
Hao Qian, Xinjiang Kang, Jing Hu, Dongyang Zhang, Zhengyu Liang, Fan Meng, Xuan Zhang, Yuanchao Xue, Roy Maimon, Steven F Dowdy,[...]. Nature 2020
136
9

Lineage Reprogramming of Astroglial Cells from Different Origins into Distinct Neuronal Subtypes.
Malek Chouchane, Ana Raquel Melo de Farias, Daniela Maria de Sousa Moura, Markus Michael Hilscher, Timm Schroeder, Richardson Naves Leão, Marcos Romualdo Costa. Stem Cell Reports 2017
33
24

Single-cell transcriptomics reconstructs fate conversion from fibroblast to cardiomyocyte.
Ziqing Liu, Li Wang, Joshua D Welch, Hong Ma, Yang Zhou, Haley Ruth Vaseghi, Shuo Yu, Joseph Blake Wall, Sahar Alimohamadi, Michael Zheng,[...]. Nature 2017
102
8

Direct neuronal reprogramming: learning from and for development.
Giacomo Masserdotti, Sergio Gascón, Magdalena Götz. Development 2016
83
9

Direct reprogramming of adult human fibroblasts to functional neurons under defined conditions.
Rajesh Ambasudhan, Maria Talantova, Ronald Coleman, Xu Yuan, Saiyong Zhu, Stuart A Lipton, Sheng Ding. Cell Stem Cell 2011
350
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.